RNA id: XR_005052963.1


Basic Information

Item Value
RNA id XR_005052963.1
length 4495
RNA type mRNA
GC content 0.45
exon number 12
gene id LOC110530200
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 79862081 ~ 79917875 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctggcctccacaatcacccgacctcaacccaattgagatggttactACGTGaatccGCACAAAACCATGGTCTAACAGAATACTATGACCAGAGACTTAAGAATGTCCCAAGTGTGGGGGTTTCTGGTCATCAACGTGGACATCACCTGTTCCAAGAGCGACCCTGGCTATGATCTACCTGAAGACCAACAACAGGTTTATCGCAGGTTGGCTGAAAGCTCCAGACACCATGTTCCTCCTGGACTGCACTCTGGacACTGGCTAGGTGTATCATCATGTGGGATGAGATTCTGCCCAACTCGAAAGCAGCAATATGCCTCCGGCAAGCCCATGACCACATAATTGCTGGAACCTGAATGACTGTGGGATTCCACTTCGCTGGCTCGGCCAACTCTGACGCATTCGACTGCTTGTAAAGTTTCGCAAGGAACTTCATGCAGTGTTTGACATCAGCAACGGCTGTGACCTGAAGGTGCTGGAGCTCTGCCGCGTCCCTTAGAAGAGGACCAGAACTATGACCCACCACATGGCcctgggaggagggagGTACACTCCAACTCGGCCATCGCTACCTTGCCATGTGCGCTCTACCACCAGTTTCCTGTCCACAGCACAGTTAACCGAGCATAGGGGACTCTGTTATGAGGAGATTACAGCTGAACTGATGCCCCCCACCATGTTGCATGAGCTGCAGATCCTCAATAAGGTCAAATGAAATGTAATCATGCTGCAAAGTCATTCTGCTAAGCAGGATGGTCCATGTTAAAATTGAGGTTTCTGTTAGAAAGTGAGTAATGCAATGTGTCCATATATGCAATTGATACGtttttctcccttcctctttacaatacagtacaaaGAAGGGTCAGTTAGGATGATCAAACTCCGCTATTTCAAGAAAATCATAGGATCTTTTTCACATTGTTTTCAAACTAAATGTTCAAAGATGAAAGACCTACTTGTTTTAATGTGGTTACAGATTCAAGTAAAAGGACCATTGATACTGGAAGCTGTCCATAGACCTGAAGTAAAGGAACTCCACATCTTGAGTCCATTCTGTCCAGAGATGGGGTTCTGTATCTGAAGCTAGGGCCCTATAAGGTCGACCTTCTGGACTGGAAGAATCTATTATCCCCCGTCGTCGTCAACAGGAACTCAGAAGTCCGCACATTCAAGCCAGAGGCCATCTCGACCTTCCCCTCCGACGCTGCCTTGGTCTCCTTCGCTGAATTCTTCTGTAAAGCCTTGGATAGCATGAGACACGTTGATTAGCAGAGTGGATGCTATGTGATGCAGCTGCAACTTAACGTTGTAACACAGAGCCAACATTGAGGGTTTAAATTAGACTTAAATACTGCCTATGTTGCTCCCCTTGTGAATCCGTTTGTTAATCACTTGAATCGCATTTCCACCAGGTAGATATCACTATATGTAATTGGACATGtggaatatttattttttaatacacTGTGAAATTGAAGGAGATTGGTTCTAACCTTTAGCTCATGATTTGATTGCAATTATTGAAACACCCCTCAATGTCCTATTTTATAATTCCACAGTTTCTGTTTCTGATTGTTCAATTGATAAGCACTCACTGAATGGAGCTTCTATTTACTGTTGTTGCACTGAATGGAGCTTCTATTTACTGTTGTTGCACTGAATGGAGCTTCTATTTACTGTTGTTGCACTGAATGGAGCTTCTATTTTGTTGTCTTTGTCCAAAAACACAACACTTTGGCCTTGACACTCAGATCGAATATCAGAGATTGTCACTCAGGAGAACCCTGAGATGCTGCCCACCTACATTGCTATTGATCAGGTGTTACAGGGCAGGACACAGGGCAGGGTCCTGcaacacagactgagacaggggGCAAATGGAAGGGTCCTGCAACACAGACTGAGGCAGGGGGCAAAGGGCAGGGTCCTGCAACACAGACTGAGGCAGGGGGCAAAGGGCAGGGTCCTGCAACACAGACTGAGGCAGGGGGCACAGGGCAGGGTCCTGCAACACAGACTGAGGCAGGGGGCACAGGGCAGGGAGCTGCTGTTCATCTGCCTGTCATGAAGAACTCAGCCGATGGCACCCTGGACTGTTGGCTCACTGGTGAGAGGTCTCAACCCAGTGGGAGGGGCACGTCTACTGGAGAATGGACTGTTAACAGATCCCTTTGAATGAACTGTACAATAATATATTAGCCTGACCGTACAGTTTGTACCAGTGTGTACCTGTAATGTGACACACATTTCCCATCAGTGGGACTGGACGTGTCAGAACCAGTCTTTGGGTGTGAACTGTAATGACATGGGAAACATGGAACGTTATGAATGGCTTGGCAACAATCGTTAGCAAACTGATTATGTGATGCTGTTACATGAAGAATACTCATAGGTCCATCCATGAATGCAGCTAACCTCGTTGGATCTGACGTGTGTGTGAACCCCACCTCCCCCCACACTCCACAGATAACAGCCATGTGTTGAGAACATACATATGGCCAGTCCCTACTGAGGGGACATGCTGTCCAACATTCTAGCCTGCTTTCTGGTCTAACACTATACCCTGCCTCAGGAAGATGTCTGCCACACACCTGGAAGTTAAACAACTGTTAACTAAATATTGTGGTTAGATGTACTTTTAGTTTGATCCTAACATCTGTCGCTTTGTTGGTGGTCTGTCTTATTGCTGACTGGCTTCATGTCTCGTGTGAATGTTATGACTGACTTGGTCGCATTCATCTCTTAACTCTGCTGGTCTCTCTCGTGTCGTTCCTCTGCTCATCTTTCATTTCCACAGGAAGTACATCGTTCCCTGAGCTCCTGTTGAAGTTGTCAGCTGTGCATCCCTGTACAAGCCTTGCTGCGCCTGGGCCCTCTCCTCATGGGGACTGCAAGCTTCAGGACTGGACAATAGGCCTGTTGAAATtacctgacctttgacctctaacCATGGTCTCTTACTTTACCTTGGTCTTGACCCAGAAGGGTCCCTCTGCCTGCACTGCTTGTTGCAGCTCACAAGAAATGGACCTGATATTATATTAAATATCATTGTAAAAGCTTTCTTGATACAGATTGTATGTCAAATGTTTATACCGTACCTGTATTCCATATAAATAATGCAGTAAATAAAAAGTGATTTGAGACTTGTGTAAGTGACCTAGAATTTAAAGGTAACTATTAGCTAACATAGTGGATGTGGATGAACAATAACTTTCGGCATTGCACATTATCACTAGTACCCACTTCCATCTACATGTTGTTTTGGCTAACTTTCGGTGTTGTGGTGTTGCCATTTTGTATTTTTAAACGACGAGCCGTTTCAACACAGCATGCAGTCTAGGCTGCCATCTCAGTTATCGTTATCTCAGAAAAGATGTTCTGCTCTCTCACATATTAATTATGTTTCTGCGGTATGTGTTGGGAGGTACTGCGTGGGCTGTGGCGCAACGGAATGCATCGGCCTGAGCTGTGATCTAACACCTCTGGGAACATTCCACAGCAAAATGGAAAACATCCTGCAACAGATACCACACCCACCTCACCCCATACCAAGCTCCGTTGAGTTCTATTGGCCTTGTATATCCAAATAGCTCTGTGTCCTCCACTTGACCATGAATGGTTACACAGGCCTTTATCTGTGTCCCCAATGGTATACTGTCAGGCCCTAAAATAACTATTTAAGTGAACAGCTTTTTTGTGGCATCTTTAGGACCAACTGACATGAAAGGTACACACAGATGTGGCAGATGGATTGCAAACATACCACATTCACTGGAATGCTGTCATGTGGTTGAGCGACAttagacagacacgcacacacaggaaaGTATTTGATTTTGCGAGGAGGGAGAACTGTCAAAGTTAACTTAGAAAGGTGGAGTGGTGCAATTCTAATGTGGCTAACTAACTAATTCTCTGGTCGTTTTCTATACAATATAATTGAATAGTGTTTTGGAACATGGTGTATCTGCTGTCAACAGCCAAGTGAAGTGAATAACTGCAAGTTCTCTGGGGAGGTAGCAACCAGTTCCCAAGCTGGCACAAAGTGGCAGAAATAACTATTTTTTTCTGTAGGAAGCATGACACTGCCATTTGGTTTGTCCTTCTATGGACATCCAGGAAATGTGTACAGAATCCACAACTTCACATTCATGATATTTTACAGATCAATGGTCAACCGGAACTGTATAGAGAGTGGGTGTAGAAGTATTCATCCGTTTATGACCTTCAAAGCCGATGCCTTTAATAAGCTTGTGGGAGGGAGCGAGCGCTCCAGGGAGTGGGCTGCTTCCGCAATAAAGCATTCTATGAATGTCATACTGGTACACACCCTCTGGTCCTGGAGGTTCCCATGTCCTAAATCAACATTGAAACAAGACCAGTATGTACAttgaaataagacaaaacaaacaaatgaaaAATGCTTCTTCATCcttaatgtgtttgttttttgaaAGTTTCATTAAAACAATGTATGCAGAAAGAGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99342 lncRNA downstream 123399 79677856 ~ 79738682 (-) True G90205
TU99268 lncRNA downstream 256801 79605007 ~ 79605280 (-) True G90137
TU99263 lncRNA downstream 263608 79598110 ~ 79598473 (-) True G90132
TU99248 lncRNA downstream 281510 79580371 ~ 79580571 (-) True G90117
TU99235 lncRNA downstream 291053 79570814 ~ 79571028 (-) True G90104
TU99403 lncRNA upstream 45831 79926215 ~ 79928905 (-) True G90260
TU99445 lncRNA upstream 80806 79961190 ~ 79989614 (-) True G90291
TU99420 lncRNA upstream 273447 80153831 ~ 80157631 (-) True G90271
TU99569 lncRNA upstream 304757 80185141 ~ 80185438 (-) True G90406
TU99572 lncRNA upstream 306092 80186476 ~ 80186781 (-) True G90409
XM_021613015.2 mRNA downstream 169502 79612637 ~ 79692579 (-) True LOC100136270
XM_036986287.1 mRNA downstream 170298 79612637 ~ 79691783 (-) False LOC100136270
XM_021612995.2 mRNA downstream 366911 79361597 ~ 79495170 (-) True LOC110530138
XM_021612985.2 mRNA downstream 413839 79361597 ~ 79448242 (-) False LOC110530138
XR_005052955.1 mRNA downstream 510677 79273232 ~ 79351404 (-) True LOC110530112
XR_002474496.2 mRNA upstream 26311 79906695 ~ 79917875 (-) False LOC110530200
XR_002474495.2 mRNA upstream 26314 79906698 ~ 79917875 (-) False LOC110530200
XM_021613088.2 mRNA upstream 28981 79909365 ~ 79917875 (-) False LOC110530200
XM_021613097.2 mRNA upstream 28981 79909365 ~ 79917875 (-) False LOC110530200
XM_021613137.2 mRNA upstream 55438 79935822 ~ 79939636 (-) False mtrf1l
TU99200 other downstream 326509 79534758 ~ 79535572 (-) True G90081
TU98450 other downstream 811590 79049811 ~ 79050491 (-) True G89418
TU96006 other downstream 2382142 77478603 ~ 77479939 (-) True G87090
TU95290 other downstream 2994483 76866904 ~ 76867598 (-) True G86448
TU94946 other downstream 3253727 76606682 ~ 76608354 (-) True G86132
TU99325 other upstream 3153 79883537 ~ 79897840 (-) True LOC110530200
TU99326 other upstream 6291 79886675 ~ 79888180 (-) True G90190
TU99544 other upstream 261175 80141559 ~ 80142157 (-) True G90382
TU101177 other upstream 1060340 80940724 ~ 80941674 (-) True nphp1
TU101249 other upstream 1147524 81027908 ~ 81028612 (-) True G91941

Expression Profile