RNA id: XR_002474496.2


Basic Information

Item Value
RNA id XR_002474496.2
length 2821
RNA type mRNA
GC content 0.43
exon number 8
gene id LOC110530200
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 79862081 ~ 79917875 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATTGGTTGATCAAGTGAGGTGAAGATCCTGAGGACAGCAAGATGTCAGAGCACTTGCGAAAAACGGATGTGTATTCTTATTTTAGGGGTTGCTTTAAGTTGTTTTTATGTCGACAATGCTGAATACGTGGTACCCAAGTAAGAGTCATATAAAGAAAACACAATGATTCCGAGACAAGGGACAAAAAATGACTTATTTTCAGGTTCGCGCCTGTGCCACTGCGGCATGCCAGCTAGCTATCGAGACAGTGCATGACAGTATGCTAATCTAAACATGGTTGCTAGATAGTTAGCCAGACACAAACATGCAACACTAAACGCTATGCTATGTGTATTTGAAGATTACGAAATGTATCCAGATTATATTAACAAACTCCTAGTAGCTAACTTGTTGGCTGGCTAAATTATGGTGATGACCACAGTCACAGACAGTAACTTTGCTAGCTAAAGTCGCTACTGTTAAGTTACTATTTGTTCAAGCCAACGGCTAGCTGTGTAGTTAGCTATCATTAGCTGTTATAGCTGGCTAACTAGATAGCTAGTTACTTGTCTGCCGTTAGGCATGTTCTACCTAGCTAGCAGTTTATTTGGCTGCACTATAAGCAATTCACAATGATCTGCGGGGCTAGCATGTTGTGTTATTTAATTTTGAACACTAAGTCACTGGTCTCATTGTATTTTCTAGGTATTTCACAGCATTTTATGTGAAGTTTAACAGGATATCTCTAAGTGAAATATACTGTCAGATATTCTCTCCTTCTGCGTCGCTCAGAAATAACGCTATCTGAAACTCATGTCGAACGACTATGAAGAGCGAGCCACAATGATAGCCGCAGTGGAACTGCAGTAATTTGTCCCGTTTGGCGTATTCAGTATATTAACCACCCGAACGATGTAAACATGCAGCTGCAAGCCTCTAAGCTCAGGTCCTCAGACACATGGTCCCCTCCAGGATGTCACTACCGCAGAAGGTGAGGGAGTGTTGGTTGCTGAGAAAGGGTTCCAGTGTggacagtgatgaggaggagCTCTATGCAGCAGGAAACATGGTCATAGGGAGCAAGAGTCAAGCTTCCCGTGTTTACAAGGCTTTCACTGTGGGCAGTCCAGTACTACAGAACAGGATGTTATGGAACAGTGTTTATTGTCCCGAGCAGCTGTGTGAATGTGCACAGTGTGACACCGAACTTGGACTTACCGAACTAGGACTTAATCTCCCCTCTACACTTTCAGGATTTCATGAAATTACAGGTCTTCAATGTGTGGCCCACAAAATTTGGTCTGCTGTTGGAACGCAAAAAGCCCTGCACCCGAGGCTCCTCCAAGTCCTCCcagGGAACCTCTTCCCACTGTATTCAGTATGCTGCACCCTCTGGATGAGAGTGGTGTGCATACCTACAGGTCTGTTCGAGGCTGCCTGTGTGCAATACGTCTCTGACAGCACCATGAAAATCATCTTCTTCAACTGCAAGCCCTCCATAGTTATATGACACTATGCAGGGCATACACTCAGTCACTCCAGATGCCTCCACTCATGGACTTACTCACCCAGCATCTTCAGCATGGCTGCACTCAGCCGGTTCCACTCCCCTGGCATGGCGGCACCCTCCTTGGCAACGGTGCAGTTTAACGTGATACCACTCATGTCCCCCAGAGGGCACAGCTTCCTGCCCTCGCCCAACAGCACTGCCAACGAGTCTGCTTGTTCCAGAGATGAAGCCCATGGTGCCTGATCTATGCACTGAGCAGCTGTGGAGTGAGACGGCCTCCTCCCACAGGCCAGTGTCTGATATTCACCTCTGCACCGCTGGCTACAGTGGTGTCATGGATCCTGCTCTGTGGCTTAGTTGGCTGACCCACTCTGTTTAGATGTTACTGTAGACATGTTTACATTGCTTTTGTCTAATAAACCTGGGTCATGTCCCATTTATTTTTATTGCGATATGTTTAATGGTAACTGCAGATTATAAGCGATATTTTCAAAAGATCTACAATTTTTATCCATTCAATGGTGGATTTTTGTTTTGTAAAACTTTCCATGTTGTGACAAATGATGGAAACTGTGTTTTGATCATTTGACAATTCATTTTGAAGTTATGTgcggtaaaaaataaaaaataacattaaCCATGTTCAGCTGTTTTTATCGACACAAGATAGTTAAATGGAAACACCACAGTATGCAATTTTCCCATTTTTTTTCTGTGCAAAAAACTAAATGTCAAACAATCTCTGGATAAGTTAATGGAAATATAGCTTGTGTTTACAATATGTTTTTAAATGCCGAAAATATTTGTATTAGGTGTGATAAATAATTAGAACGTCCTGAACATATTGTAATATAATTTCCATGGAAACCATTGTAGGGCATACTGTGAAATCTGTAGGAGAATTCAATTAAATAGATCTTTATTGTCCCTGTAGGGCACTTCATAAAAatacatgtatatacacacagtaaATACCCATTGACATCGGGAAGATTTAAAAGCATTGAAAAAGAGCCATAGATGTATAAAATATACAGTAAATATCTGTCTTGTACAGCAAATATCTCGCTTCTACAGTAAATATCTGGCTGCTGTAGTTATGGTCTGCGTCTGTGAGATGGGTTAACAACACTCTGCTTCTGCAGGGAGCTGAGCTGCCAGGCCTCCAAGGTGTTCAGCTTTCTGTGTCCTGTAGCTTTCTTTGTCCTGTAGCTTTCTGTGTCCTGAATTGCTCTAGAATGTAGAGCTGAAATGGTTGAGTTCCTCCAACTTGGCACTTATCATCTTGATTGTGTCTATACATCCGGGGTAGCTGATTTAAGTGTTCTGTT

Function

GO: NA

KEGG: NA

JBrowse2

Loading

Neighbor

RNA id RNA type direction distance location representative gene id
TU99311 lncRNA downstream 38920 79863436 ~ 79867775 (-) False LOC110530200
TU99342 lncRNA downstream 168013 79677856 ~ 79738682 (-) True G90205
TU99268 lncRNA downstream 301415 79605007 ~ 79605280 (-) True G90137
TU99263 lncRNA downstream 308222 79598110 ~ 79598473 (-) True G90132
TU99248 lncRNA downstream 326124 79580371 ~ 79580571 (-) True G90117
TU99403 lncRNA upstream 8340 79926215 ~ 79928905 (-) True G90260
TU99445 lncRNA upstream 43315 79961190 ~ 79989614 (-) True G90291
TU99420 lncRNA upstream 235956 80153831 ~ 80157631 (-) True G90271
TU99569 lncRNA upstream 267266 80185141 ~ 80185438 (-) True G90406
TU99572 lncRNA upstream 268601 80186476 ~ 80186781 (-) True G90409
XR_005052963.1 mRNA downstream 26311 79862081 ~ 79880384 (-) False LOC110530200
XR_005052965.1 mRNA downstream 35812 79862081 ~ 79870883 (-) False LOC110530200
XR_005052966.1 mRNA downstream 35814 79862081 ~ 79870881 (-) False LOC110530200
XM_021613015.2 mRNA downstream 214116 79612637 ~ 79692579 (-) True LOC100136270
XM_036986287.1 mRNA downstream 214912 79612637 ~ 79691783 (-) False LOC100136270
XM_021613137.2 mRNA upstream 17947 79935822 ~ 79939636 (-) False mtrf1l
XM_021613125.2 mRNA upstream 20817 79938692 ~ 79946936 (-) True mtrf1l
XM_036986382.1 mRNA upstream 117411 80035286 ~ 80058352 (-) False LOC110530250
XM_036986390.1 mRNA upstream 117411 80035286 ~ 80058352 (-) False LOC110530250
XM_036986400.1 mRNA upstream 117411 80035286 ~ 80058352 (-) False LOC110530250
TU99325 other downstream 8855 79883537 ~ 79897840 (-) True LOC110530200
TU99326 other downstream 18515 79886675 ~ 79888180 (-) True G90190
TU99200 other downstream 371123 79534758 ~ 79535572 (-) True G90081
TU98450 other downstream 856204 79049811 ~ 79050491 (-) True G89418
TU96006 other downstream 2426756 77478603 ~ 77479939 (-) True G87090
TU99544 other upstream 223684 80141559 ~ 80142157 (-) True G90382
TU101177 other upstream 1022849 80940724 ~ 80941674 (-) True nphp1
TU101249 other upstream 1110033 81027908 ~ 81028612 (-) True G91941
TU101251 other upstream 1112957 81030832 ~ 81031358 (-) True G91943
TU101255 other upstream 1117700 81035575 ~ 81036138 (-) True G91947

Expression Profile

XR_002474496.2 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.8.
End of interactive chart.

XR_002474496.2 Expression in each Bioproject

Bar chart with 19 bars.
XR_002474496.2 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 10.
End of interactive chart.