RNA id: XR_005052967.1


Basic Information

Item Value
RNA id XR_005052967.1
length 2462
RNA type mRNA
GC content 0.51
exon number 15
gene id LOC110530250
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 80035286 ~ 80058352 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGATGCGATCCAACAAcacaatcccaaagaagaagaagggtTCTTTGACGCAACTACGTGGGATTATTTTAAATAGGACAAGATGGCCGAGGTTAGCGGGCTGAGGAAACGGAATCATTTCGAACAAAACCGCAAAAGACACGTCTTTGACGAAGgtgcGGGTGGTGTGGAAGATGTTCCTCTGTCCCTGCCAGATCGGAAGCCTCCTCCCAGGATGGCGCCTCGGGCAGAGGCGGATAGCGAGACAGACGAGGAGTGGGAACAGGCCCCAGAGCTGACTGCTGCCGATCAGAGTCCTGTCAAGGAGCAACCTGTagaagaggtggtggtggaggagaaggCTCGGCCCATCCAGATTGTCCTGGCTCACGAAGACGACCACAAATTTGAGCTGGACACGGCGGCTCTGGAGAAGCTCTTACTGCaggaggatgtcagagaccttaatgtggtggtggtgtcagtgGCTGGGGCCTTCCGTAAGGGGAAGTCCTTCCTGCTGGATTTCATGCTCCGATACATGCTCAACCAGCAGCAGGAGCAGTCAGACTCGTGGGTTGGGGCTGATGATGAGCCGCTGACAGGGTTCAGCTGGAGAGGAGGCTGTGAGAGGGAGACCACAGGGATCCAGGTCTGGAGTCAGGTGTTTGTGGTCAACAAGCCGGATGGGAGCAAGGTTGCTGTTCTGCTAGTGGATACACAAGGAGCCTTCGACagccagtctaccataaaggactGTGCAACGGTTTTTGCCTTGAGCACCATGACCAGCTCTGTACAGGTGTATAACTTGTCCCAGAATATTCAGGAGGATGATCTTCAGCATCTCCAGCTCTTCACAGAATACGGCCGGCTTGCTTTGGAGGAAATCTATCTAAAACCCTTCCAGTCTCTCATGTTCCTCATCAGAGACTGGAGCTATCCATATGAGCACAACTATGGACTGGAGGGAGGTAAACGCTTTCTAGAGAAGAGACTGCAGGTGAAACAGAACCAGCACGAGGAACTGCAGACCGTGAGGAAACACATCCACTCCTGCTTCTCCAACATCGGTTGCTTCCTACTGCCCCACCCCGGCCTCAAAGTGGCCACCAACCCCATGTTTGACGGCAGATTAAAAGACATtgatgatgactttaaggaggCACTGGGCAATCTGGTGCCCTTACTGCTGGCTCCTGAGAACCTGGTGGAGAAGGAGATTGGAGGGGCTAAAGTGACCTGCAGAGATCTAGTGGAGTACTTTAAGGCCTATATAAAGATCTATCAAGGGGAGGAGCTTCCTCATCCTAAGTCAATGTTACAGGCAACGGCTGAAGCCAACAACCTTACAGCAGTTGCTGGAGGAAAAGACACTTACAGCAGAAGCATGGAAATGGTGTGTGGAGGGGACAAGCCCTACATTGCCCCTGCAGACTTGGAACGCTGCCATGAGGAGTTCAAGGAGTGCTCGGTGCGTCAGTTCCGCTCTGTGAAGAAGATGGGAGGGGAGGACTTCTGCAAGAAATACCAGGAGCAGCTGGAGGGCGAGCTGGATGAGGCCTACTCCAACTTCCATAAGCACAACGAGGGCAAGAACATCTTCTACGCTGCGCGCACACCCGCCACGCTCTTCGTTGTCATGTTCACCACCTACATCGTCTCAGGGCTGACCGGCTTCATTGGAATGAACACTATTGCCGTGCTGGCCAACCTGGTCATGGGCGTGGCTCTCATAACTCTCTGCATGTGGGCCTACGTCAAATACTCAGGGGAGTTCAGAGATGTGGGCACCATCATAGACCTGTTGGCAGAGACACTCTGGGAACAGATGACTGCCAGAAAGGTGCTTTCCAAACTCTTTGAGTTGGCCAGGAGTCGAATCACGTGGCACTCTTTCCTACCATCAGCAGCAACGCAGAGAAAGAGACTCCCCTCaaacaacaatgacaagaagaCTCACTAACTTTTCTGGCTAGCTGCTTGGCTCTTTATTTCCAAATGCATCTGCAGTCCACTCTTGTCATTCCTTGTGACATATGGGGCTGGTCTTAATTACAGGGAGGTTGTGTTTGCCTAGTTCATTCTACATGTAGAATATGCAGGTTGGCACTCCCTAATCTTCTGATTGTAATCACAGCAGGCCCACTGGAATTGGCCTACTGACTAGTCTTAAATCATCTCaacaattattgtattttttaatcCATTTGTTCATTTGCCATTCTGCTCGTCATACCTTGTGGCCTATGGGGTCTGTTTGTCATTACAGGGAGGTTGTGGCCGGTCTTAATTACAGGCAGGTTGTGTCTGCGTAGTTCACTCTGTTCCATGTAGGATGCAGgTGTTGAAGCCACTGAGTGCGCAATATATGGAGGATAACGTTAGACAGACTGTGGTTAACTCCATCAGAGCCAGTCTGACGGAACAAGCCACACAGCACGCAAAATTAAAGTCACACTGACCCCTCCTGCTATTACTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99445 lncRNA downstream 46826 79961190 ~ 79989614 (-) True G90291
TU99403 lncRNA downstream 107535 79926215 ~ 79928905 (-) True G90260
TU99311 lncRNA downstream 168665 79863436 ~ 79867775 (-) False LOC110530200
TU99342 lncRNA downstream 297758 79677856 ~ 79738682 (-) True G90205
TU99268 lncRNA downstream 431160 79605007 ~ 79605280 (-) True G90137
TU99420 lncRNA upstream 95479 80153831 ~ 80157631 (-) True G90271
TU99569 lncRNA upstream 126789 80185141 ~ 80185438 (-) True G90406
TU99572 lncRNA upstream 128124 80186476 ~ 80186781 (-) True G90409
TU99596 lncRNA upstream 145940 80204292 ~ 80204504 (-) True G90429
TU99606 lncRNA upstream 152657 80211009 ~ 80211228 (-) True G90439
XM_021613125.2 mRNA downstream 89504 79938692 ~ 79946936 (-) True mtrf1l
XM_021613137.2 mRNA downstream 96804 79935822 ~ 79939636 (-) False mtrf1l
XR_002474495.2 mRNA downstream 118565 79906698 ~ 79917875 (-) False LOC110530200
XM_036986443.1 mRNA upstream 14218 80072570 ~ 80138452 (-) False LOC110530258
XM_036986453.1 mRNA upstream 14218 80072570 ~ 80138452 (-) True LOC110530258
XM_036986459.1 mRNA upstream 162664 80221016 ~ 80236430 (-) True LOC110530266
XM_021613272.2 mRNA upstream 208288 80266640 ~ 80349843 (-) False LOC110530293
XM_021613282.2 mRNA upstream 208288 80266640 ~ 80349843 (-) False LOC110530293
TU99325 other downstream 138600 79883537 ~ 79897840 (-) True LOC110530200
TU99326 other downstream 148260 79886675 ~ 79888180 (-) True G90190
TU99200 other downstream 500868 79534758 ~ 79535572 (-) True G90081
TU98450 other downstream 985949 79049811 ~ 79050491 (-) True G89418
TU96006 other downstream 2556501 77478603 ~ 77479939 (-) True G87090
TU99544 other upstream 83207 80141559 ~ 80142157 (-) True G90382
TU101177 other upstream 882372 80940724 ~ 80941674 (-) True nphp1
TU101249 other upstream 969556 81027908 ~ 81028612 (-) True G91941
TU101251 other upstream 972480 81030832 ~ 81031358 (-) True G91943
TU101255 other upstream 977223 81035575 ~ 81036138 (-) True G91947

Expression Profile