RNA id: XM_036986459.1


Basic Information

Item Value
RNA id XM_036986459.1
length 4631
RNA type mRNA
GC content 0.55
exon number 21
gene id LOC110530266
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 80221016 ~ 80236430 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGGGGGTAGCagcagaggtagaggaggaaggggaaggagctctggtggagggaggggtagaggtggCGGAGATAGGGGTAGGGGAAAGGTTAATGGTAGGGGTTTACCCAAATCCCTAATTAGCGAGAGACCTCGGCCTAGAATGCTGAATGAAGACAGTCCTCGCCTCAGGCCTGAGATGATGGGCAACATGCCCATGCAGAAGATCTTCATGACCAATGAGAACCAGGAGCAGGTGAAAGAGCTGCTGAGAGAGCTGCAGACCCAGGACTACGACGACGAGCCATATGATGAAGAAGAGGAgtatgaggaagaggaggagtatgATGAGCTGGATTACCGGGAGGAAGGGCAGTTCTGGAACACCCATGATGAGCCTGTTGGGAGTGCAGAGAGCCCCGTCTTTGATCCTGACTCTGAGGATGAACGGCGGCCCACTCCCGAGCCAGTCATAGGACTGTTTGCCATAGGAAAGCTCTGCAGGTATGGTTTCGACCGGGAGCGCAGCAAGCAGGCCCTGGAGGCAGGTGTTGGGGAGGTGGGAGCCACCATGGAACAGCTGCTCCTCCAGGTCTTCTCCGAGCGCTACGGCCCCAAAGCTGTCTCCCCCGATGGCCTCCAAGGGGCGCCCATGGACGAGTGCCTCACCCAGAGACAGGAGGAGGCCTTGGCCCTCACCGCCATCTACGGCGACCGCTTCACCGAGCGCATCGCCAACAGCGTTTGGACTGTCACTTTGGACCCTGACTTCCTGGCTGACATTGCAGGAGGAAAACAGAACACATCTGCTCGTACCGACAACTCCGTTCAAATTAGGGACGTCTGCAGCTTCTACCTAAAGGGTGCCGGCTGCAAGTTTGGAGCTAAGTGCAAGTATAAGCACCAGATGCCCACCAAGGGAACAGCTTCGGGCCCTCAAGACCCCGTGGGAGCCAGCCAACCTGGGTTCAGCAGCTACTCCTCTCCAGAGTACGTGCTGGAGGTCCGCTTCCCTAAAGGGAACCGCTACCCCTTCCAGGCCCCTGTCGTGGCCTTCAGCACTAACGATGAGACCATAGGGTCCGCAGCCAGGCTGAGTGTCACAGAGCATCTGTTCGGGGAGGCCTTGGCTGCAGCGAAGGAGGGGGAGCCCGTGGTCTACACCCTGATCACTTGCTGCGAGGACGAGGTCACCATGAAGGAGCTGCTGTCAGTCACGCATCATAAATACAGCTCCCTGCCCCCTGTGGTAGTGGCTCCACCCCCTGCTGCTGTTGCCATGACGAAGAGCAAGAGTGGGAGGAGCAACACGGCATCACATGTGGAGAGCAAGAGTAGTACGAACATCAACAGAACTACCCCAACTAACAGCACCGCCAACAGCAGCACTGCCCCAACTAACAGAACAAGCAGCCACAGGATACAGCAGGCCACAGAAgacttggaggaggaggaggatgaggaaggagTGGTGGTTCCTCAGACTGAGAGCTATGTCAACCTGAGGAAGAAGATGGTGAAGAGACATGAAGAGAGGACAGGGAGCCAGCAAAAGGAGAACGCCAAACTGTGTCGAGAGTTCAGGACAAAACAGTCATCCAGGCGCTTCACCTCCATGTTGCAGCAGAGACAGAAGCTGCCTGCTTGGAATGAGAAGGAGAACATCCTGGACCTGTTGGACAACTGCCAGGTGCTAGTGGTCAGTGGCATGACTGGGTGTGGTAAGACCACCCAGATCCCTCAGTTCATTCTGGATGCATCTCTGAGTGGGCCTACTGACCAGGTGGCTAACATCATCTGCACCCAGCCCCGCCGAATCTCTGCCATCTCCGTGGCTGAGAGGGTGGCACAGGAGCGGGCAGAACGCCTCGGTAACTCAGTGGGTTACCAGATCCGCCTGGAGACTGTCAGGtctgcgGCCACCAGGCTGCTGTACTGCACCACAGGAGTTCTACTGAGGAGGCTGGAGGGGGAGGCAGACCTCACAGGGATCTCTCATGTCATAGTGGATGAGGTGCATGAGCGCACAGAGGAGAGTGACTTCCTCCTGTTGGTGTTGAAGGATCTGATGGTACAGCGACCAGATCTGAAGATCATCCTGATGAGTGCCACCCTCAACGCCGACCTCTTCTCCCAGTACTACAACAACTGTAACACCATCCACATACCAGGACGCACTTTCCCTGTCGACCAGTTTTTCCTGGAAGATGCAGTTGCCAAAACCCGGTATGTGATTGAGGATGGCAGTCCGTTCATGCGCTCGGGCGGGGGGAAGTCCTCATCAGGCAGTaagggaggcagagggggggCCAAAGACCCCGTGGACCAGCTGGGAGACGACATGTGGTCCTTCATGAACCTCCAGAAAAAAGACTTCATTAAAGACTCCATCCCTGACCAGCAGCTCAGCCTGCAGGAACTCACTGTCCGATACAAAGaCACCAAGAAGTCTGTCTTGAAGACCATATCTGCCATGGACCTGGATAAGATCAACATGGACCTGGTGGAGAGTGTGCTGGAGTATATTGTGGACGGGGACCATAGCTACCCTCCAGGTGCTGTGTTGGTATTCATGCCGGGCCTGGCTGAGATTAAGACTCTTTATGAGCAGCTCCAGTCCAACAGGATGTTCAACAACCGGAACAGAGCCAGgtgTGTGGTGTACCCGCTCCACTCGTCCCTGTCTAACGAGGAGCAACAGGCTGTGTTCAAGCGGCCACCAGAGGGCGTCACCAAGATCATTATCTCCACCAACATCGCTGAGACCTCCGTTACCATCGACGACGTGGTCTACGTTGTGGACTCAGGCAAGATGAAGGAGAAGAGTTACGACGCCTCTAAGAGCATGGAGAGCCTGGAGGAGTCGTGGGTGTCCCGTGCCAACGCCCTGCAGAGGAGAGGGCGAGCTGGCCGCGTGGCCTCAGGGGTGTGCTTCCATCTCTTCACCAGCCACTGCTTCCAACACCAACTGGCAGAGCAGCAGCTGCCAGAGATCCAGAGAGTCCCCTTGGAGCAGCTCTGCCTCAGGATTAAGATCCTGGATGTGTTTGCGGAGCGGCCATTGGATTCTGTGTTCTCCCGGCTCATTGAGCCCCCGGCCATGGGCAGTCTGGATGCGGCCAAGCAGCGTTTGCAGGACCTGGGGGCTCTGACGGCCGACGAGAAGCTCACCCCTCTGGGCTATCACCTGGCCTGTCTGCCTGTGGACGTGCGCATTGGCAAACTCATGCTGTTTGGTGCCATCTTTCGCTGCCTGGACCCTGCCCTCACCATCGCTGCCAGCCTGGCTTTCAAGTCCCCTTTCGTGTCTCCTTGGGATAAGAGGGAGGAGGCCAATGAGAAGAAGCTGAATTATGCCCTGGCCAACAGTGACCATCTGGCCCTGCTGCAGGCATACAAGGGCTGGTGTGGTGCAGCCAGAAACGGGAATCAGGCCGGGTTTCAGTACTGCAGAGAGAACTTTCTGTCTAGCCGGGGCTTACAGGAGATAGCCAGTCTGAAGAGGCAGTTTACAGAGCTGCTGTCTGATATTGGCTTCGTCAAGGAGGGACTGAAGGCTAGAGTCATTGAGAGAATGGCTGCCAAAGGGACTGATGGTATAATGGAGGCTACAGGCTGTGAGGCCAACCTCAACTCTGACAACATCAGGTTGATGTCTGCCATGCTCTGTGCTGCCCTATATCCCAATGTAGTACAGGTGAGGTCTCCTCATGAGAAGTTCAAGCAGACCAGTAAAGGAGCGGTGAAGATGCAGCCCAAAGCAGACGAGTTGCGCTACATGACCAAGAATGACGGCTGTGTCCACGTACACCCCTCCTCCGTCAACTACACGGTGCGCCACTACGACAGCCCCTACCTGGTGTACCATGAGAAGGTGAAGACGAGCCGTGTGTTCATCAGAGACTGCAGCATGGTGTCGGTGTACCCCTTGGTGCTGTTTGGGGGGGGACAGGTCAACGTTGAGCTGCAGAAGAGCGAGTTCGTCATCTCCCTGGACGACGGCTGGATCCGGTTCGCCGCAGCATCGCACCAGGTGGCAGAGCTGGTGAAGGAGCTGCGCTGGGAGTTGGACCAGCTCCTCGAAGATAAGATCAGAAACCCCAGCATGGACCTGTGTACTTGCCCGAGAGGCTCCCGTATCATCCACATGATCGTCAAGCTCATCACCACCCAGTAAACCACCCCGCTCCCCTTCATTACACACCCAGCACTTGTCTTTAGATGAATACTTTGCTCCACCTCCCAGTCTTACAGTACATTGGATCAAGTCTTATTGGTGGTAGCATTGCAATGATACAAGTGCTGCTGAACAAGCATACTGAAATCGCTGTTTTTGCTGTCATAGGAAGTGCAATAGATTTGGCAGAGTTGTTTGTTAAATTTGAACTGAATTGCTAAAAAGGTTATTTACCTGAAATGGTAATTTGCCattgtttgtgtatatatatattttggccaCATTTCCTGTATATATGGGAAACTCAAGTTGCGTTTTATTATAGGTTGTGCCTTTCTTGCACACAACTAAAAATAGCATTTGAGTCCATATTGGATTCCCGTACTGAAAATGGTTGCACATTTATGCTTTTGTGTGTATTTAGAAATAACTAATGCATGATTGACTGAAATGTGAATAAAGCTCTAAGAGCTTC

Function

GO: NA

KEGG:

id description
K13026 DHX57; ATP-dependent RNA helicase DHX57

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99610 lncRNA downstream 5448 80214799 ~ 80215568 (-) True G90443
TU99606 lncRNA downstream 9788 80211009 ~ 80211228 (-) True G90439
TU99596 lncRNA downstream 16512 80204292 ~ 80204504 (-) True G90429
TU99572 lncRNA downstream 34235 80186476 ~ 80186781 (-) True G90409
TU99569 lncRNA downstream 35578 80185141 ~ 80185438 (-) True G90406
TU99945 lncRNA upstream 354 80236784 ~ 80237768 (-) False G90744
TU99946 lncRNA upstream 354 80236784 ~ 80237768 (-) True G90744
TU100017 lncRNA upstream 119478 80355908 ~ 80356132 (-) True G90798
TU100018 lncRNA upstream 119707 80356137 ~ 80356357 (-) True G90799
TU100063 lncRNA upstream 188753 80425183 ~ 80426740 (-) True G90839
XM_036986443.1 mRNA downstream 82564 80072570 ~ 80138452 (-) False LOC110530258
XM_036986453.1 mRNA downstream 82564 80072570 ~ 80138452 (-) True LOC110530258
XM_036986400.1 mRNA downstream 162664 80035286 ~ 80058352 (-) False LOC110530250
XM_021613272.2 mRNA upstream 30210 80266640 ~ 80349843 (-) False LOC110530293
XM_021613282.2 mRNA upstream 30210 80266640 ~ 80349843 (-) False LOC110530293
XM_021613291.2 mRNA upstream 30210 80266640 ~ 80349843 (-) False LOC110530293
XM_021613297.2 mRNA upstream 30210 80266640 ~ 80349843 (-) False LOC110530293
XM_036986542.1 mRNA upstream 30263 80266693 ~ 80349739 (-) False LOC110530293
TU99544 other downstream 78859 80141559 ~ 80142157 (-) True G90382
TU99325 other downstream 323176 79883537 ~ 79897840 (-) True LOC110530200
TU99326 other downstream 332836 79886675 ~ 79888180 (-) True G90190
TU99200 other downstream 685444 79534758 ~ 79535572 (-) True G90081
TU98450 other downstream 1170525 79049811 ~ 79050491 (-) True G89418
TU101177 other upstream 704294 80940724 ~ 80941674 (-) True nphp1
TU101249 other upstream 791478 81027908 ~ 81028612 (-) True G91941
TU101251 other upstream 794402 81030832 ~ 81031358 (-) True G91943
TU101255 other upstream 799145 81035575 ~ 81036138 (-) True G91947
TU101313 other upstream 944394 81180824 ~ 81181463 (-) False LOC110532756

Expression Profile