RNA id: XM_021613337.2


Basic Information

Item Value
RNA id XM_021613337.2
length 1421
RNA type mRNA
GC content 0.53
exon number 2
gene id LOC110530352
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 80383566 ~ 80386413 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACACACTCCCCGGTAAATGCCTTACAGTAAGGGAAGAGCCCAAAGCTAAACGAACGCAGTTGATATGTGAAGTGTTGTTCGATTATTTGTAACGTTTTTTTATGGCATGGTTATTCATACTGAGAGAATGGCGATATGATGAAATCAACAACTTCCTTTCTGTGCACTGCTTTTTTCTCATCGTGcatttacatcaacaacacacTCGCCTGCCCACCCCCAGATATCCTGACGTTCATCATGGGGCAGTTGTTGGCCTCAGAAAAGGAGCAGTCGGAGGCTCAGGTTGCTATTGGCTCTCTGCTCTACTCCGCCATGTTGGAGGCCGGTGCTCTGCCTGATGTTGCCGTCGACCACTATCTGCTAGCTAATCCAGAGAGCCTAGACTCCAGGGCCCACCTACAGGACCACCTCCGCCAGCTGCAGGGGCACGTAGGTAACCGGGCGCCcacctacctgaaggagctgatCAGCCGCCTGGTCGCTTTCTCTGACGAGCCCAAGGTTGCAGGCCTGGTGGGCTTGgtggtctccatggtgatggaGACGGCATACGCCTCGTCCAGGGGGTCAGTGAGGTCAAGGGGTTGCCAAGTCGAGGAACGGCGAGCGGAGCTCCAGGACGTTATGGAGGAGTACCTCAAGCGCTGCCGGATGCACTTGAAGGATGAGCAGAAGCTGAGAGAAGACACCCAGCGTCTGGAGGGCCAGCTGAGCTACTTGCTGACCCAGCTGAAGAACACCATGCTCAGGGAAGGCCCCAGCTCCAAGGCCCTGAAGCACTGGGCCAGCGGCGCCGCCTTTCACACGCAGATGCTGCTGCACCTGACCAGGCTAGAGCAGAGAGGAGACCCGCTGGTCGTCCAGGCTGCAATGGAGCAGTACCAAGAGGACTTCAGAGAGATTCTACCTGCGTACAGATGCTACAAAGCCAGTACGGTGACTGTGATAAAGTGTAGGGGAGGGCTGCAGACCGGGGAGGATCCTCTGACTGAGGGGAGTGTGACTGGGTTCACTGTGGTGGATAAAGAGTTAGGGAAGAGTGTGAGTGTACCCCTACCTGAGGACGCTCCCCCTGGCATTGTCCTGATCACTTCAGATATGTGTGCTCAAGCCTATTTAGAGCGACTGTTCTCTCCACAAGGCCCCATTGCAGACCTGGAGAGGTACTTTCTCAACAGCAGAGAGAGTCTACGCATGAAGTTGATGGTACAAGAACCAACGGACCCCAACGAGAGGCTGAGCATAGTGGAAACAGAACCCCTAGACAGAAGATAGCACATGTTCATGTTGACTTTCATACAGGCAAAGGCAAGATGCAAAATCCACAGAACTGAACGAACACTCTTGACTAAATGTGCATTTATTGTATTGTATGTATGATCAAATGTTGAATAATAATCTGGTTTATTCAATGCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99718 lncRNA upstream 27040 80357379 ~ 80357600 (+) True G90528
TU99717 lncRNA upstream 28916 80355319 ~ 80355724 (+) True G90527
TU99625 lncRNA upstream 117180 80262755 ~ 80267460 (+) False arhgef33
TU99628 lncRNA upstream 117180 80262755 ~ 80267460 (+) True arhgef33
TU99613 lncRNA upstream 166588 80217712 ~ 80218052 (+) True G90446
TU99733 lncRNA downstream 17102 80403515 ~ 80407720 (+) False G90542
TU99734 lncRNA downstream 17102 80403515 ~ 80408049 (+) True G90542
TU99749 lncRNA downstream 50469 80436882 ~ 80439031 (+) False G90556
TU99750 lncRNA downstream 50469 80436882 ~ 80438806 (+) True G90556
TU99870 lncRNA downstream 267492 80653905 ~ 80757902 (+) True G90671
XM_021613323.2 mRNA upstream 20614 80359816 ~ 80364026 (+) True LOC110530346
XM_021613199.2 mRNA upstream 120906 80248099 ~ 80263734 (+) False arhgef33
XM_021613209.2 mRNA upstream 120906 80248100 ~ 80263734 (+) False arhgef33
XM_036986434.1 mRNA upstream 350863 79956334 ~ 80033777 (+) False slc29a1a
XM_036986726.1 mRNA downstream 628292 81014705 ~ 81056605 (+) False LOC110532748
XM_021616873.2 mRNA downstream 628293 81014706 ~ 81056605 (+) False LOC110532748
XM_036986735.1 mRNA downstream 635450 81021863 ~ 81056605 (+) False LOC110532748
XM_036986762.1 mRNA downstream 670582 81056995 ~ 81078956 (+) False LOC110530417
XM_036986746.1 mRNA downstream 676310 81062723 ~ 81078956 (+) False LOC110530417
TU98806 other upstream 619281 79751773 ~ 79765359 (+) True acoxl
TU98716 other upstream 834989 79549017 ~ 79549651 (+) True G89667
TU96076 other upstream 2814170 77570015 ~ 77570470 (+) True G87159
TU95475 other upstream 3260213 77123935 ~ 77124427 (+) True G86614
TU94822 other upstream 3748704 76631745 ~ 76635936 (+) True G86019
TU100301 other downstream 378701 80765114 ~ 80766155 (+) True G91064
TU100812 other downstream 1151918 81538331 ~ 81541400 (+) False G91541
TU101077 other downstream 1491126 81877539 ~ 81879178 (+) True G91779
TU101096 other downstream 1519719 81906132 ~ 81907395 (+) True LOC110530526
TU101849 other downstream 1742231 82128644 ~ 82148774 (+) False LOC110530572

Expression Profile