RNA id: XM_021613378.2


Basic Information

Item Value
RNA id XM_021613378.2
length 2640
RNA type mRNA
GC content 0.48
exon number 20
gene id nphp1
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 80940215 ~ 80966643 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGGAAGTCGTTGCTTAGCGACAACTAAAAGCGTCTGATAAGTGTGAACTTTCAGTTGCTAGCGGCTTAATTTTGTTTTGTATAATATTGTAAttagaataaaaaatatataatatacatatatatagctAGCTATGCCACCAAAAAGACAAGGGCCTCTTCAAACAGTGCAAAGAGAGACGGATGATATCAAAAGACAGGTTGACAGTCTGATAAAAGATGCACGGCTGTCGGATGGGTCAGGGCGCACAGAGGCATATCAGAGCCGATGCATACATCTACAAAACTTAGTGGAGGAGACAACCAGAAAGCTCAAGAAGTTAACCAAGGCTGATGAGCCAGCCCCAGTGGGGAATTACGAacagagaaagatggaggaggaAAGCCGTCTGCGGGGGATTGAGGAGAAGCTGCTGGTCCTAGTCCAGGAGCTCTCTCCGCCTCAGAAACGTGAGGGAGGGTCATCCCAAGCCcaggaagatgaagaggaggaagacagtgAGGAAGACAGCGAAGaagacagtgaggaagaggagagtgaagaCGAGAGTGTAGAAGATGAGGAAGAAGATGATGATGAGGAAGATGTAGTCACAAAGACCATGGAACAAATTCCAGATTCAGGCACTGCCACGTATATGGTCATCAGTGCCTTTAAAGGAGAGCAGGAAGGAGATCTTACCATTCAGATGGGTGAGGTCCTGGCGATTCTCAATAAAAATGAGGATGGCTGGTGGCTTGCTCAGGACTCAAAGGGCAGTAAGGGACTAGTCcccaaaacctacttgaagAGATATTCAGAccaggaggaggatgatgaggaagCGTCAGAGGATGAGGAGCTTGAGTCCAAAAGGAAGCAGAGCTCAAACTGGGACTGTGTGAGGAGAGCCATCACTGAGATTGATGCTACTGATGTTCTGTCAGCCATGGGTGCCATCCCTGCTGGGTTCAGGTCATCCACCCTCTCTAAACTACTAGATGAGGGGATTACCTACAGAGCAAGTCACTACATCCAGCCCGAGTTGAGCCAATCCAAACTGTCCTTCAAAGACCTCTTCCGGGACCCAGACACTGGAAAAGTTCGTCAGAGGACAGCGAGGACGTCCCTCACTCTGACTCTGTGGAGCTGCAAGAGTATCCCCACCCCAGGGGTCGGAGTTCAAGTCCTCAGTCGGCACATCCGCCTCTGTGCTTTCGACGGTACTCAGGTTCTTAGTAACATCCACACCATCCGAGCCACTTGCAATGCAAACAACGTCAAGACCTGGTCCTTTTCTCCCCGGATGACTGGGAATCTACCCAGCCTTTTGGACGGGGACTGTTTTCTGAGGTGCAACTCGGACGCTCCTGAGCTGGGAATATTATTTGAACTTGGAGTCACATACATCCGAAATTCTACAAGTGAGAGAGGAGACCTGAGCTGTGGCTGGGCCTTCCTGAAGCTCTTTGACACCAACGGAGCACCTGTCCCACACAGgACCTATGAATTGCTTGTGCATGGAGGCACACCGTATGAAAAGGACGTAGAGGTAGATCCATCTTTAACAAGAGGAGTCACAGGAACAGGCATGTTCCAGCAGATGATGTTGTCCAGGAAACTCCCTAAACTCTTCCTCAAACTGAAATCGCCAAACGTTCGCACAAGGTCACAGCTGAGTGCTCTTCCAGACACTCTAGTGGGCAGTCTCTCCAGTATACACCTGCTGGTTCTGCACAGACAACTACTGGCAGATATTCTGCTTATGGACAGGGCTACCATGCAGAATGCAGATCTGATCTGTAGTCCTCTGCTGGCCACCTTCCCAGAGATCATGGACCAATCGGACCTGCTGGATGCCCTGAGGAAGTCTTGGTTGGAGGCTGAGAGCAATATGAAGAGATCTGAAAAGAGGGACCTACCTCTGCTGATGAGGAAGTTTGTGAGGGTATACATGGACAacatctatcctctcctctactcggCTGACTTGCCCCCTCCTCGCTGGGCTGATGAGATGGTGGAGAACCAGCGGGCACGAGTCATCTTCAACAGTTCCCTAGAaccattccacacacacaccccggaCAGCCCCCCTCGCCACCAAGCCTTTGACGTCTCACAGCTCACCTATGACCTCCTCTGCATGGCCCAATAGCAACTGCATAAATCTGTCTGTTTCCAGAGTTATTTATTcaaaattataaactgggtggttcgagccctgaatgctgattggctgacagcagtgGTATATCAGAGAGGTTACCATGGGTATGACAGAactgttggtaaccagtttataatagcaataaggcacctcggggggttgtggtgtatggccaatataccacggctaagggctttaTACAGGCTCTCCACGTTGCTCCTTGCTTAAGAACATcattttggccatataccacatccccTCTGGCATTATTGCTTAGTTATATGTCACTATTTAGTTTTGTATTTTTCTATATTTATAATAAACTATAATAGATGACATTGGTCGTcatcctttattttttactcagaTGTTTAAAATACAGTCCCAGAAAGTGCCaggtgttacggttttcttccggtgaaagagaggaggaccaaaatgcagcgtggttattcatAAACATCTTCAATGAAAGATGAAAATACGAACaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100436 lncRNA downstream 78193 80861804 ~ 80862022 (-) True G91198
TU100407 lncRNA downstream 98164 80841760 ~ 80842051 (-) True G91169
TU100398 lncRNA downstream 103214 80836784 ~ 80837001 (-) True G91160
TU100385 lncRNA downstream 113278 80826728 ~ 80826937 (-) True G91147
TU100380 lncRNA downstream 118063 80821945 ~ 80822152 (-) True G91142
TU101232 lncRNA upstream 47890 81014533 ~ 81015155 (-) True G91928
TU101234 lncRNA upstream 49493 81016136 ~ 81016356 (-) True G91930
TU101236 lncRNA upstream 52177 81018820 ~ 81019368 (-) True G91932
TU101247 lncRNA upstream 56608 81023251 ~ 81023528 (-) True G91939
TU101250 lncRNA upstream 62031 81028674 ~ 81029019 (-) True G91942
XM_036986646.1 mRNA downstream 17858 80919948 ~ 80922357 (-) True LOC118965579
XM_021613366.2 mRNA downstream 34436 80903337 ~ 80905779 (-) True LOC110530369
XM_036986620.1 mRNA downstream 293075 80409477 ~ 80647140 (-) True slc8a1b
XM_036986617.1 mRNA downstream 293076 80409477 ~ 80647139 (-) False slc8a1b
XM_036986571.1 mRNA downstream 563291 80364027 ~ 80376924 (-) True thumpd2
XM_021613423.2 mRNA upstream 9349 80975992 ~ 80982681 (-) False LOC110530390
XM_021613398.2 mRNA upstream 9349 80975992 ~ 80991714 (-) False LOC110530390
XM_021613408.2 mRNA upstream 9349 80975992 ~ 80991714 (-) True LOC110530390
XM_021613479.2 mRNA upstream 202159 81168802 ~ 81174060 (-) False ppifa
XM_036986800.1 mRNA upstream 202159 81168802 ~ 81174063 (-) True ppifa
TU99544 other downstream 798058 80141559 ~ 80142157 (-) True G90382
TU99325 other downstream 1042375 79883537 ~ 79897840 (-) True LOC110530200
TU99326 other downstream 1052035 79886675 ~ 79888180 (-) True G90190
TU99200 other downstream 1404643 79534758 ~ 79535572 (-) True G90081
TU98450 other downstream 1889724 79049811 ~ 79050491 (-) True G89418
TU101249 other upstream 61265 81027908 ~ 81028612 (-) True G91941
TU101251 other upstream 64189 81030832 ~ 81031358 (-) True G91943
TU101255 other upstream 68932 81035575 ~ 81036138 (-) True G91947
TU101313 other upstream 214181 81180824 ~ 81181463 (-) False LOC110532756
TU101510 other upstream 640835 81607478 ~ 81617324 (-) True LOC110530475

Expression Profile