RNA id: XM_036986839.1


Basic Information

Item Value
RNA id XM_036986839.1
length 6947
RNA type mRNA
GC content 0.50
exon number 21
gene id LOC110532756
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 81175845 ~ 81449471 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcaccctgcaTCCTGTCATCTGTGGAGTGAGTTGGAGCTGATAGCAGGTACAGCTGGAGGCTGTAACCCATTATTACTGAGCGATCTCTCTGATTGGCTGAGCCGACGAGACCGGGAGACAGCTTCTGAATAATAGACGAGCATTGTGCCGacactggacaggaaatagagagagaaccagagagagagagagcgtgcgcgTGCGCacgagagagggtgagacagagagatcaaCAACAGAGTGAAAGATAAAAGTAAGGGCAGAGGTAAGAGAGATGAAAGAAGGGAGGAATAAGTGAAACCGTTGCCACTGGTCTAGTGTTGTTCTGACATcagagctttctctctctctctgtgctatgAGGAAAATGACATGAGACACACTGAGACTTTGCTTGACTCTGGtaGAATTCTCTGCACACTATTGAGGGAAATGATCGTCTTCCGAGACCCACGTGTGTCTGAAATCCGCTTATAACCAGCTGAGGGGATGCACTGAACCAAAGTGAATGAATGGAGCGTGAGGGCACTGAATCTGTGTTGAGCTGTCTGCTTGAAGAAGCCCTGCTGTCATCGTGGTGCGAGGAGCTGGGTCGCCTCCTGCTGTTGCGTCACCAGAAGAGCAGACAGAATGAGCCTCCGCAGGGCAAAGTCCCCATGCAGCCCAACATGAACACCATGAAACCCCCTGGAGGACTATCACACggTGATGGGTCATTTACCTACGACTCAGTTCCATGGCAACAGAACAACAACCAGCCCCCAGGGTCATTGTCTGTGGTTACCACCGTGTGGGGTGTGACCAACACGTCACAGAGTCAGGTGTTGGCCAACAGCTCCAGCCATATGAACCCAGGAGGTAACCCCATGGGTCAGGGTATGTCTGGGGGTCCGGCAGGCCTCAACTCCCCCCAGTTCTCCGGCCAGCAGCAGCAGTTCCCGGCCAAGGGAGGCCAGGGCCCGGGCTACATGCAGCAGGGGATGTATGGCAGGCAGGGATACCCCAGTGGAGGGGGCTACAGCGGGAGTTACCCAGGTGGTCCTAACACTCCCCCAGGGGGGATGGGGATGCCCCAACACTCCCGCCAGCCTGGCGACTTCACCCAACCAGCAGCTGCCGCCGCTGCTGCCGCTGTCGCTGCCGCCGCTGCTACGGCAACCGCCACGGCAACCGCTACCGTGGCAGCCATGCAGCAAGAGACCCAGAACAAAGAGATGAACCAGTATGGACAGATGTGTTCCTCCTTCCAGATGGGCCCAACTCAGGCGTACAACAACCAGTTCATGAACCAGCCTGGCCCCAGAGGGCCCCCTGGAGGCATGAACCCAGGCAGCATGGGCCAGGCCATGAACAACCCCAGCATGGGTGGGCCTCCCATGGGAATGAACCAAACTCGAGCCCCAGCCATGGGGCCTTTTGGGGCTCACGGCCAGAGGATGTCCCAGCAGGGCTACGGAGGACCTGGAGGCCCCAGGCAGGCCATGCCTATGCAGGGAATGAAGAGGCCCTATCCTGGAGAGCCAAACTATGGGGGTCAGCAGTATGGTCCTAATGGTCAGTTCCCTCCCCAGCAGAGTCAGTACCCCACCTCTAACCCCTCCAGGCCAATGCCCTCCCCCAACTACCCGGGCCAGAGGATGCCTGGGGGGCAGGGGCCAGGCCAGTACCACCCGCAAGGCATGCCCATGGGACAGTACTATAAGCAAGAGCCATTCAATGGTCAGAACAGCAACTTCTCTGGTGGTGTATACTCATATAGTCAAGGCAACGGGGCCCCCAGGCCAGGTAACTACCCCCACTCCCCGGTGCCTGGTAATCCCACACCTCCCATGACCCCCGGAAGCAGTATGCCTCCATACCTCTCGCCCAACCCGGATGTCAAGCCGCCGTTCCCACCAGACATGAAACCAAATATGACAGTGCTTCCACCTCCCAATACCACAGATACATTTAAACGGAAAGCTGACGTCCTATCTTCCTGTCCTGTCTCTCCGCTCCAATCAGCCAATCCCAACGAGGAGCTGCGGTTGACCTTCCCGGTCCGGGACGGCGTGGTATTGGAACCTTTCCGGTTGGAACACAACCTCGCCGTCAGTAATCACGTCTACCACCTGCGACCGTCGGTACATCAGACACTCATGTGGAGGTCAGACCTGGAGCTTCAGTTCAAGTGTTACCACCACGAGGACCGACAGATGAACACCAACTGGCCTGCCTCCGTCcagGTCAGTGTCAACGCCACGCCCCTGACCATCGAGCGAGGCGACAACAAGACGTCCCATAAACCCTTGCACCTGAAGCAAGTGTGCCAGCCCGGCAGAAACACCATCCAGATCACTGTCACTGCCTGCTGCTGTTCGCACCTGTTTGTGCTGCAGCTGGTCCACAGGCCTTCAGTCCGCTCCGTCCTGCAAGGGCTCCTGAAGAAGAGACTCCTGCCTGCAGAACACTGCATCACCAAGATTAAGAGGAACTTCAGCAGCGTAGTGGCCTCGTCGGGTAACACCAGTCTAAACGGGGAGGACGGCGTTGAGCAGACCGCCATCAAAGTCTCCCTCAAATGTCCAATCACCTTCAGGCGCATCCAGCTGCCTGCCAGGGGGCATGACTGCAAACACGTACAGTGTTTTGATCTGGAGTGGTATCTGCAGCTGAACTGTGAGAGGGGGACGTGGAGGTGTCCTGTGTGCAATAAAACTGCATTGTTAGAGGGTTTAGAGGTGGACCAGTACATGTGGGGAATCCTCAACGCCATCCAGAATTCGGAGTTTGAGGAGGTGACCATTGACCCAACGTGTAGCTGGCGGCCGGTGCCCATCAAGTCTGACCTCCATATTAAAGAAGACCCTGATGGACCGCTGGCCAAACGCTTAAAGACCATGAGCCCCTCCCAGATGACCATGCCCAACGTCATGGAGATGATCGCCCAGCTGGGCCCTGGCCCCTCCCATTACCCATCAGGCCCTGCTCAGCACGGGGGAGGCGGCCCAGGGGGAAACCCAGGGGAGTACGGTGGCCCCAGAGGCCCAGGCAACAATTACCACGGCCACGGGAACTTTGACTTCCCCCACGGTAACCCCTCAggcgggggaggaggaggaggtggactgagagggggaggaggatccCCCATGAGTGACTTTATCAACCCCCCTCAGCTGTCCCACCTCCCAGACGTTCCTGGGGTTCTCCTATCCCAGGACAAGCCCCTCAGCCACGGCATCAACGACCCCatgtCTCATCCTTCCACCACTGATCAGCACCATAATTCCATGCAACAGCAGAGCGCACACGTGCCTCCTCACCCCAACAGCCAGTCGTTACATCACGGTGGCAGCCAAGCAGGGCAGTCGTTGCATCACAGCAGCCAATCGTTGCAGCCCCCTCGCCAGCAGGCCCCAACTCCCCAACAGCAGCAAGGCCAGAACAGTCGCCCGCATGGCGATATGAACTTTAACCACTCGTCCTCGGGCATCGAAGGTCAAATTAGTGGTGACATGCCTGAGCCCTCCCTAGATctgcTTCCAGAGCTGGCCAACCCAGACGAGCTCCTGTCCTATCTGGATCCTCCAGACCTCCCCTCCAACAGCAACGatgacctcctctccctcttcgaGAACAATTAACCTTTCACCTCCCTCACCGCTCGAGCCGAACCCAAACCTtctccacagacagacacacacaccacagggtgTGTCCAACCAGCTGGACTCTCCATAGAGTCCATAGACACACCGTCGTCCTCATTTGGACTGGCAGTGGGGACATCgtcaagtcacacacacacacaaacaaagacgTGTAGGTGGCATAGGAGCAACGCTGAGGTCATCTGTCAGAACATGAGGCGATGATGAGGATGACAGGGAGTGGACACTGTGTGTGACAGAGTTTGGAAACAGGAAATGCACTCATGACctcacttcctcttcctcacacacactcttccttGTGTAAAGACTCTTTACACTGCTCCGCTGCGGAGCTCCTCCGGCCGACAACATCGACGGCCAAGTCGGTTGTCTACCCCTTCAGTGATATTTTATCTCTTGTCTTTTCCAACTTAAACTGTGCAGCTAATAATCACGTTCTATGTGTAGGACGTCACACAGGCCGAACTCTCTGTGTGAGCTTTTAGGGAAAAGTGTTGTAGCATTTTGTATCGTCCTTATTTCCCCCTTATACAAAAAAAGGAAAAACAATACATGAATAGGGAAGAAAAGTCATCTTCTTGTCCTAGCCAGTGTTTATATCTATCCTCTTTTGACGTGTGTTCTTCCAAGCCCTGACCCCCTGAGACCACAGCCTTTAACCCCTGACCTTTGACCTACAGTGTGTTCTTATAACCTCTGACCTTTAGCTCATAGTGTGTATTTCCAACGGGACGTCCGTCATCACTGGGTACGTACCATCCAGTCTAACTGAAGCACAACCGATGGTGGGTCACACCACATGGCAGGCAGAGCCCTGGGAGGAGAGACCAAGGCCTGTGGATGAGGATcctaacctagctagctagcccacCCAGTCTACATAAGAATCAGCATTGTTAACTCTATTCAGTCTGTATCGCCCCTGTATCGTGTTAAGTACAATGCCATATCGGACAGTGGGCTATGCAAAAGTATGTTTtacaaaaacatttgttttggCTTAGAATGATGGAGaagtatgtgtgtatctgtgtgtgtgtgtatgtgctagAGAAAGAGTGAAGATGAGAGTGATAGAAAAAGAGAAGTACAGAGTCCGTCCTTATTTAGTCTATCATAGAGACACAGCTAGTGTTGCAAAAGATAGTCGGCCATTCTAATAGAGCCAGATCCCTCTTTAACGTGAGACTTCCTCTGTTCTACAGGCCTGCAATTGCTCCTGTAACCATACTGTGTGGTGTTAAGAAGTGCATGTGTGCCAATGGTCTTTGTTCTAGATTAGCCAGAACCATTCTAGCCATTGCATTTTTTTATCAtgattttatttgacatttttttgCAAAGGAATGATTTTGGCTAATGTCCATCTTTTTTCTTTTCATGTTTGTTTTATTTCTTCTGTTCATTGGAAAATGGCCATGCGTGATGCATCACCAAAGTTATCCTACAGTTTGTAGAAGGAGTTAGCTTGGACATCTACTATAATGTAAGAATAatatggtctaaggcactgcatctcagtgctagaggcgtcactacagaccctggttagattccaggctgtatcacaaccggtcgtgatttGGAGTAtcatagggcggctcacaattggcccagcgtcttccgggttagggtttggctggggtaggccgtcattgtaaataagaatatgttcttaactgacttgcctagttaaataaaggttacacaatACATCAAAACCATACACTTGGGGAGCCCATCAAAAAGTGTTCTGAACAGATGTGTGGTTGCACTGCATTTCCTATGTCTTGTTACTGTTAAACTGTATTTTGTCAACTTTTGTTCAAAAGGAACCACAATGGTTTATAAAGACAATACTTTAAAATGGTTGCCATCCTGACAATATATGCTTTAAAAATGTTTGCTAATGTATTGGGGAAAAGTAGAGGAAAGTGACTTGACCCTCTATCATTTTTGTTTAAGTCAAGTCTAAATTGTAATACCCTCTGGAATTGAATGtgagttattttttatttttgtgaaTCCTGTTTTGTACAACACAAGATCATCATGCGTATTATTCTATCCTCGTAGCATTTTTGATATTGTTCTCCTATTTTAAGTTATTTTCTGTAATTATTCAGTGACTGTGAGAATAATCATAATTTGGTTTACTTAAGATCATGTAGGCTACTAAATGAAATTGAAGACTTCTCAATCGGTGGATATTTTTAGGACTTAAGAATGATCCCCAACGCTGGTTGAATCACCTGAATACAACTGACCCTACGATATtttaggctgtctgtctgtctgtgtcaatgTCTGTTTGTTGAAGACAATGCACTGCCACAGTGAGGTATTTTAACTCCCCTGCCCTGTCTATCTTTAGATCTGTGTAGACATGATGCTGAAGTCTGGTCTATCAACATTACTCTCGATACGCCTTGTCCGAGGTTCAGGCTCCACACCAAACTGTAGATGTACAGTCAATGGACACAAGTGGAGTGTGTTAGAGGGTGCAATGTATTTTCATTTAAAGAAAATGGGAGATGTGATCCCCTGCCCTCTGTTTTCTGTCACTAACATGCAGGAATAGGGTCTGGAGGGTCTCTGAGGGATGCATGTACATAGTGTAaatgacagatagagagagatacattaaCTTACAGAAATGTAGACATTTTCGCCACACGGGGCAATGATGCGCATTGTGTATTTAGAATTTGTAAAGTTTGCATCCTCCTGTCAGAAGAGACTGTTGAATTGTGGGAAATGGAGTCTGTGTTTGATAGTCTGTACAGCCCTCTGTCTCCAACCACATGTTCATTCATGTAAGATACTTTATCTACTTCTCAAACATGGGGGTGttggaaaaggagaaaaaaagaaacatttgTTTCCCTTTGTGTAAAACTTCTGTGTATTTCTCTATTACTTGTGTACTTTATAAAggtgctactactacaacaacataaTAAAGATAATTTTGAGGAATAAATCGGGACGTGGGAACCATGAGTGGTTCCTAAAGATTGTTGATACCAAATTTACAGTTTGTACAATTTTGGCAAATTTACAGTTTTTACACAATTAGGCAAAAAATATTACTTCCAAGGTACAATCTGAAGTGATTGGCACACCAAGTGGCAGTTGTCTTTTTTGTTTTGTACATTCTGTGTACAGTCATTTCATATTCTAAACTGGTCAGAAAAAAATGAATTGTGATTTTTAGTCTTGCAAAACTGTATGTAGTTAGATGACGTGACATCCTAATATTTATCTAATAAATATGTATTCAGATGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101265 lncRNA downstream 96893 81071777 ~ 81078952 (-) True G91953
TU101264 lncRNA downstream 118597 81056865 ~ 81057248 (-) True G91952
TU101263 lncRNA downstream 119426 81056105 ~ 81056419 (-) True G91951
TU101243 lncRNA downstream 120089 81049906 ~ 81055756 (-) True G91935
TU101246 lncRNA downstream 130048 81044816 ~ 81045797 (-) True G91938
TU101366 lncRNA upstream 62056 81283097 ~ 81283317 (-) True G92044
TU101368 lncRNA upstream 65451 81286492 ~ 81287073 (-) True G92046
TU101369 lncRNA upstream 66733 81287774 ~ 81288015 (-) True G92047
TU101372 lncRNA upstream 73816 81294857 ~ 81295117 (-) True G92050
TU101379 lncRNA upstream 86724 81307765 ~ 81307983 (-) True G92055
XM_036986800.1 mRNA downstream 1782 81168802 ~ 81174063 (-) True ppifa
XM_021613479.2 mRNA downstream 1785 81168802 ~ 81174060 (-) False ppifa
XM_021613398.2 mRNA downstream 184131 80975992 ~ 80991714 (-) False LOC110530390
XM_021613408.2 mRNA downstream 184131 80975992 ~ 80991714 (-) True LOC110530390
XM_021613423.2 mRNA downstream 193164 80975992 ~ 80982681 (-) False LOC110530390
XR_005053019.1 mRNA upstream 244509 81465550 ~ 81532357 (-) True LOC118965609
XM_021613497.2 mRNA upstream 317310 81538351 ~ 81542584 (-) False rps24
XM_021613506.2 mRNA upstream 317310 81538351 ~ 81542584 (-) False rps24
XM_021613515.2 mRNA upstream 317310 81538351 ~ 81542584 (-) False rps24
XM_036986845.1 mRNA upstream 319509 81540550 ~ 81542584 (-) True rps24
TU101255 other downstream 139707 81035575 ~ 81036138 (-) True G91947
TU101251 other downstream 144487 81030832 ~ 81031358 (-) True G91943
TU101249 other downstream 147233 81027908 ~ 81028612 (-) True G91941
TU101177 other downstream 234171 80940724 ~ 80941674 (-) True nphp1
TU99544 other downstream 1033688 80141559 ~ 80142157 (-) True G90382
TU101510 other upstream 386437 81607478 ~ 81617324 (-) True LOC110530475
TU101970 other upstream 939366 82160407 ~ 82161743 (-) False G92566
TU101980 other upstream 939366 82160407 ~ 82161743 (-) True G92566
TU102078 other upstream 1072772 82293813 ~ 82294303 (-) False LOC110532782
TU102047 other upstream 1074271 82295312 ~ 82301847 (-) True LOC110532782

Expression Profile