RNA id: XM_021613497.2



Basic Information


Item Value
RNA id XM_021613497.2
length 586
RNA type mRNA
GC content 0.50
exon number 7
gene id rps24
representative False

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 81538351 ~ 81542584 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AATTTTGGTCGCACCGCTTCCATTCAGGCATTTGGTTGGCCAGCTTCGGGCCCTTCCTCCTTTTCCGCATCCCTGAGAGGCTGATGCCAAGATGAACGACACAGTAACAGTCAGAACCCGGAAGTTTATGACAAACCGGCTGCTTCAGAGGAAGCAAATGGTTGTTGATGTCCTCCATCCAGGCAAAGCCACAGTCCCTAAGACTGAGATCAGGGAGAAGCTGGCCAAAATGTACAAGACCACCCCCGATGTGGTGTTCGTCTTCGGCTTCAGGACACAGTTTGGTGGTGGCAAGACGACAGGTTTCGCCATGGTCTACGACTCTCTCGACTACGCTAAGAAGAACGAGCCCAAGCACAGACTGGCCAGGCACGGTCTCTATGAGAAGAAGAAGTCCTCCAGAAAACAGCGCAAGGAACGCAAGAACAGAATGAAGAAAGTACGAGGTACCAAGAAAGCCAGTGTGGGTGCTGCTGGCAAAAAGAAGAAATGAGGTCTGTTCCAGTGAGCCCGGAGAATCAGGGATGGTCCTCGTGCTCAAGATGTTCTTGTATATTGTCATCAAATAAAACGTTTGGAAAAGTCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU101474 lncRNA downstream 33300 81504560 ~ 81505051 (-) True G92134
TU101434 lncRNA downstream 83319 81404393 ~ 81455032 (-) True G92097
TU101302 lncRNA downstream 89010 81447796 ~ 81449341 (-) True LOC110532756
TU101436 lncRNA downstream 130369 81407286 ~ 81407982 (-) True G92099
TU101425 lncRNA downstream 143508 81371301 ~ 81394843 (-) True G92089
TU101533 lncRNA upstream 42683 81585267 ~ 81587688 (-) True G92193
TU101575 lncRNA upstream 134693 81677277 ~ 81679005 (-) False G92233
TU101576 lncRNA upstream 134693 81677277 ~ 81679005 (-) False G92233
TU101579 lncRNA upstream 134693 81677277 ~ 81679005 (-) False G92233
TU101582 lncRNA upstream 134693 81677277 ~ 81679005 (-) True G92233
XR_005053019.1 mRNA downstream 5994 81465550 ~ 81532357 (-) True LOC118965609
XM_036986812.1 mRNA downstream 88880 81175845 ~ 81449471 (-) False LOC110532756
XM_036986819.1 mRNA downstream 88880 81175845 ~ 81449471 (-) False LOC110532756
XM_036986826.1 mRNA downstream 88880 81175845 ~ 81449471 (-) False LOC110532756
XM_036986829.1 mRNA downstream 88880 81175845 ~ 81449471 (-) False LOC110532756
XM_036986856.1 mRNA upstream 2641 81545225 ~ 81557378 (-) True qrfpra
XM_021613577.2 mRNA upstream 64894 81607478 ~ 81629726 (-) False LOC110530475
XM_036986874.1 mRNA upstream 105828 81648412 ~ 81725766 (-) False LOC110530466
XM_036986871.1 mRNA upstream 105829 81648413 ~ 81725766 (-) True LOC110530466
XM_036989917.1 mRNA upstream 321240 81863824 ~ 81905659 (-) True LOC110530522
TU101313 other downstream 356888 81180824 ~ 81181463 (-) False LOC110532756
TU101255 other downstream 502213 81035575 ~ 81036138 (-) True G91947
TU101251 other downstream 506993 81030832 ~ 81031358 (-) True G91943
TU101249 other downstream 509739 81027908 ~ 81028612 (-) True G91941
TU101177 other downstream 596677 80940724 ~ 80941674 (-) True nphp1
TU101510 other upstream 64894 81607478 ~ 81617324 (-) True LOC110530475
TU101970 other upstream 617823 82160407 ~ 82161743 (-) False G92566
TU101980 other upstream 617823 82160407 ~ 82161743 (-) True G92566
TU102078 other upstream 751229 82293813 ~ 82294303 (-) False LOC110532782
TU102047 other upstream 752728 82295312 ~ 82301847 (-) True LOC110532782

Expression Profile