RNA id: XM_021613563.2


Basic Information

Item Value
RNA id XM_021613563.2
length 2188
RNA type mRNA
GC content 0.40
exon number 7
gene id LOC110530473
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 81635394 ~ 81641798 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTTCCGGTGAACTGTCAAATTTCGACCTGTCATCCACGGAGAAAGCCTGGACCAAAAGTAACAGGACGGAGTGTTAGAACCACTGAGACAAGGTGAAGACAACAGACATGTCCTTTATATTTAACTGGATCTACAGAGGCCTCAGTGGTGTGCTGCAGTTACTAGGTTTATATAAGAAGTCTGGGAAACTGGTGTTCCTTGGTTTGGACAATGCTGGGAAAACAACACTACTGCACATGCTCAGAGATGACCGACTGGGACAGCATGTGCCAACACTACACCCCACATCAGAAGAGCTGACCATTGCTGGGATGACATTCACAACATTTGATCTTGGTGGTCACACACAAGCCAGGAGAATCTGGAAGAACTACCTCCCAGCTATAAACGGTATAGTCTACATGGTGGATTCGGCAGACCATGAGAGACTACAAGAAGCCAAAATTGAACTGGATGCGCTGTTAACAGACGACACCATCTCCAACGTGCCTGTACTTATCCTGGGGAATAAGATCGACCGTCCAGAGGCCATCAGTGAAGACGCACTCAGAGGGATGTTCGGGCTCATTGGACACACTACTGGAAAGGGTAATGTGTCACTGAAGGAGCTGAACCTGAGGCCCATGGAGATCTTCATGTGCAGTGTTCTGAAGAGACAGGGATATGGAGATGGTTTCCGCTGGCTCTCACAGTACATTGACTGATCTATATATCACTCCCATCTTATCTCTCTTTTGCCTGATTCACACGATAGAGCTAACCTGAACCTTACTGGGTGGGCTTCATCATTTGTTTTCTAattgtcctttccagcatggTTCCAGTAACTATGATCGATGTGTAATGCAGGCCAGCAAGGCTCAATAGTGTGAAAAGGAAGAGTATTTGTTTATCAACTGTTTTGTATGCACAAGAGTACAGGCCTCACACATCTACCTGCTGGAAAAGCTATCAACTGCTAGCATTCATTGTAATTTTTGCATTTGAGTGTGCCCTCAGTAAGTAAATATATTTCTAAGAAAAATGTACTTTTATTGATAAACTTTCAGTATTTTTTGTTGTAGCCCCGGATAAgcacacctcattcaactcatgGAGGCTTGATAataaattgacaagttgaatcaattCTGGTTTGTTTGGGGCTACAATAAAAATATGTGCTGTTGGGGAAACACTGAGCTATTAAAATATTCAGGCCTAGTGATTGTTTGATAACCCTCTAACAGTTGAACCCATTGATAATTGGTCGTCTGAGCCCTATGTAGTGAATTCAAACTTCCTTGTCTAAGCCAAGTATCAACCTGCAAACCCAAGATTTCGTAGTTTACACATTTCGTAGTTTTCAATTATATATTATCGGTTACTTACTGGTGGTGAACATTTAAGGATACCTCATGTCTGTCAAACCATTCTTATTAATATGATTAAGTTAGTTAGGCAATCCCCTCTATGTTCGGCAACGTTACCTCTACACTTATAGGGTAGGACATGCCATCGCTTTGAACCAGTTTGTAACCCcggtttattttttaaatcggtGGCATTTGATTACAGAGGAGTGCTTATTGGTGTAACAGTTCCGCGTTTTCTTTTCGCCATTGCTGATGTTGCCTTCCACGTAATAtaggcctgggttcaaatactattagaaatatttcaaacactttgtACTTCTGGGACTTTTCTGTTGGTTCCATTgcaacaggcaagctcaatcaagcacagctggAGTATTTTACCAATGAGGACAAAGTTGTCAAATGAATGTTTTTGATCGATCAATTCAAGTTGAATCACTACCAACTGATGCCATGAATGTGACTACAAGTGCATTATCACTTTTTATTTATTAATGCTTGTTTGTAATACAAAGGTGCAGTATTTTGTAATACCAGGGTTTTATTACAACCACGTTGTCAGTCACAGACGATGTATGTCATTTCAACTACCAGTACCTACCTACTGTATCGATGGTTTTTGTTACTGTAAAATAAGTACTTGGTGATTATTGGCTGCTCATAGCTATAATATGAGGGTACTTGTGTGGTACTGAAGAATATAGGCTTTGTAGGAAATACACAATATATGTGAGTGCAATAGATAGAGGGTACTTTTTAtcctttttgtacataatgtgaAATTATTCTGCATGCCCTCTtatcaaaataaatattttggaCAATC

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07953 SAR1; GTP-binding protein SAR1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100943 lncRNA upstream 25751 81607137 ~ 81609643 (+) True G91652
TU100811 lncRNA upstream 93994 81540939 ~ 81541400 (+) False G91541
TU100813 lncRNA upstream 93994 81540939 ~ 81541400 (+) True G91541
TU100770 lncRNA upstream 240344 81394341 ~ 81395050 (+) True G91503
TU100764 lncRNA upstream 244093 81387354 ~ 81391301 (+) True G91498
TU100972 lncRNA downstream 35482 81677280 ~ 81679008 (+) True G91678
TU100979 lncRNA downstream 46044 81687842 ~ 81688700 (+) False G91685
TU100980 lncRNA downstream 46342 81688140 ~ 81688700 (+) True G91685
TU100998 lncRNA downstream 87690 81729488 ~ 81729709 (+) True G91703
TU101000 lncRNA downstream 90570 81732368 ~ 81732661 (+) True G91705
XM_036952491.1 mRNA upstream 372 81620220 ~ 81635022 (+) False ipyr
NM_001165208.2 mRNA upstream 380 81620265 ~ 81635014 (+) True ipyr
XM_036989902.1 mRNA upstream 303282 81331546 ~ 81332112 (+) True LOC118966718
XM_036986783.1 mRNA upstream 460295 81084034 ~ 81175099 (+) True zcchc24
XM_036986774.1 mRNA upstream 476969 81084034 ~ 81158425 (+) False zcchc24
XM_021613537.2 mRNA downstream 175 81641973 ~ 81645418 (+) True tysnd1
XM_021613590.2 mRNA downstream 133363 81775161 ~ 81777001 (+) True LOC110530482
LOC110532764 mRNA downstream 146065 81787863 ~ 81790971 (+) True LOC110532764
XM_021613655.2 mRNA downstream 162016 81803814 ~ 81812914 (+) False scdb
XM_021613625.2 mRNA downstream 162017 81803815 ~ 81812914 (+) False scdb
TU100812 other upstream 93994 81538331 ~ 81541400 (+) False G91541
TU100301 other upstream 869239 80765114 ~ 80766155 (+) True G91064
TU98806 other upstream 1870035 79751773 ~ 79765359 (+) True acoxl
TU98716 other upstream 2085743 79549017 ~ 79549651 (+) True G89667
TU96076 other upstream 4064924 77570015 ~ 77570470 (+) True G87159
TU101077 other downstream 235741 81877539 ~ 81879178 (+) True G91779
TU101096 other downstream 264334 81906132 ~ 81907395 (+) True LOC110530526
TU101849 other downstream 486846 82128644 ~ 82148774 (+) False LOC110530572
TU101852 other downstream 486846 82128644 ~ 82145474 (+) False LOC110530572
TU101853 other downstream 486846 82128644 ~ 82145452 (+) False LOC110530572

Expression Profile