RNA id: XM_021613590.2


Basic Information

Item Value
RNA id XM_021613590.2
length 1554
RNA type mRNA
GC content 0.43
exon number 2
gene id LOC110530482
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 81775161 ~ 81777001 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATTTATTTAGCTAGTTCCATTCTATAATTGTCTTTGGTGTAGTCCAGCTGGTCTGGTCGGTGGTGAAAGACATAGCACTCTTAgcacttattttatttattatttcatcGTCAATGGGTTTAAAAAATGTACTTTACCTTTTCTTATAACAACTCACTGGACGACAGGTTCCCTTCCTCCCCACAGGAAGACCTGGGTTCTCAACGGTTGTCCCGGGGGAATCTGGTGCAGAAACTAACCGTAATCAAAAGGATCAATCAACGGTTGGCAGACAAAGATCATCGAAGTTGGAATAGTGACACTGGATCAGTCACAGACATGTCCATGATATCAGAGTCTGACAGTGGTCTCTTCTACAGTCCACTGGAGGAGTCTCTCTGTGCCCACATTGTAAAGACCATTGTGGAGAGCCTCTCAGACGCTACGGACACTGTCCTGTGTTGCTCCAAACTGGTCCTACCAGATCCTCTCCTGCACAACATCAGTCGGGAGCTTCTCCATCTGGCTGCTAGTGAGCCTTGCGGCCTCAAGGGGGCGCTCATTgacctgtgtgtggagcaggggGACCAACAAGGAGAACTGTGTAGTGTGGAGCAGATAGCCGTTGACCATAACCTGGTTCCAACCTTCCATCTCACCCTCGTGCTACGGCCAGAGGTGGGGGGGTTGTGGCCCAAGGTGCAGAGGCTCTTTGGGGGCCGGAAGGCTGTGTCCCCCCAGAGGCAAAGTGGGAGACACACACTCAGGCTCAGTACCGGGTTCAGGGCTATCAAAAGAAAGCTATATAGTTCAGGAGAACTGCTCGTTGAAGAGTGCTGACCTGGCAAGAGCTATGGATGTTTTGTAGTAGATATCAGACCTGAGTCTAATAATACATATCTGAAATACTTTGATACACTTAGTATGCTGCACTTTGTTTGGTTTGCTTGGTGCAATGGAACCAGTGTAAtggtcccaaaagtgcaaatcaagcATGCTTCAATACTTTGACTATGGTCGGATGTATATAATATTGTCTGACTCTGGTCTGATGTATATATTGTCTATGACTCTGGACTGAAGACAACACTACATTGAGAGAAGCCTTGTATGGCTCTGTGTGATAGAAGTGATTTCCAATGTGGTCACCAATGTACCTAAAGAAAACTCACTCCACTTCTGAAGCTGTGTAGGTACCTTGAATAGTCAAATTCTGAAGATGCTTATAATTCCCATAGTCGGGAAAGAAAAGCTTGTGCAACAATGTTAACcatgtattatttttttgtatatgctaaaatgtattacatgttTTCTAGGGAACACATCTTATGGCAGCTTTTCCACATCAATTGACATGTGGAGACAATTGAATGTAAGATATGGCCATAAAGACAATGAAAAACTTCTGTTGTTGAACCATGGATTTGATTAGACAGTATTTATTTGAACCATGGATTTGATTAGAAAGTATTTGATACTCATATTCACCTGAACTGCTTTTTGTACTTTCTTTCAAGAACTTGAAACTGAAAaactaaaatacattttcaaattaaAATATTCATGTGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101005 lncRNA upstream 37457 81737502 ~ 81737704 (+) True G91710
TU101004 lncRNA upstream 38630 81736323 ~ 81736531 (+) True G91709
TU101001 lncRNA upstream 41862 81732862 ~ 81733299 (+) True G91706
TU101000 lncRNA upstream 42500 81732368 ~ 81732661 (+) True G91705
TU100998 lncRNA upstream 45452 81729488 ~ 81729709 (+) True G91703
TU101016 lncRNA downstream 780 81777781 ~ 81778177 (+) True G91721
TU101027 lncRNA downstream 24550 81801551 ~ 81801784 (+) True G91731
TU101035 lncRNA downstream 36842 81813843 ~ 81814164 (+) True G91738
TU101040 lncRNA downstream 57155 81834156 ~ 81884237 (+) False LOC110530514
TU101039 lncRNA downstream 57633 81834634 ~ 81835118 (+) True LOC110530514
XM_021613537.2 mRNA upstream 129743 81641973 ~ 81645418 (+) True tysnd1
XM_021613563.2 mRNA upstream 133363 81635394 ~ 81641798 (+) True LOC110530473
XM_036952491.1 mRNA upstream 140139 81620220 ~ 81635022 (+) False ipyr
NM_001165208.2 mRNA upstream 140147 81620265 ~ 81635014 (+) True ipyr
XM_036989902.1 mRNA upstream 443049 81331546 ~ 81332112 (+) True LOC118966718
LOC110532764 mRNA downstream 10862 81787863 ~ 81790971 (+) True LOC110532764
XM_021613655.2 mRNA downstream 26813 81803814 ~ 81812914 (+) False scdb
XM_021613625.2 mRNA downstream 26814 81803815 ~ 81812914 (+) False scdb
XM_021613632.2 mRNA downstream 26814 81803815 ~ 81812914 (+) False scdb
XM_021613640.2 mRNA downstream 26814 81803815 ~ 81812914 (+) False scdb
TU100812 other upstream 233761 81538331 ~ 81541400 (+) False G91541
TU100301 other upstream 1009006 80765114 ~ 80766155 (+) True G91064
TU98806 other upstream 2009802 79751773 ~ 79765359 (+) True acoxl
TU98716 other upstream 2225510 79549017 ~ 79549651 (+) True G89667
TU96076 other upstream 4204691 77570015 ~ 77570470 (+) True G87159
TU101077 other downstream 100538 81877539 ~ 81879178 (+) True G91779
TU101096 other downstream 129131 81906132 ~ 81907395 (+) True LOC110530526
TU101849 other downstream 351643 82128644 ~ 82148774 (+) False LOC110530572
TU101852 other downstream 351643 82128644 ~ 82145474 (+) False LOC110530572
TU101853 other downstream 351643 82128644 ~ 82145452 (+) False LOC110530572

Expression Profile