RNA id: XM_036986898.1


Basic Information

Item Value
RNA id XM_036986898.1
length 4175
RNA type mRNA
GC content 0.52
exon number 16
gene id LOC110530536
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 81910118 ~ 82005198 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAAGCGCGGAGGATAATTCCCTATGCGCGTCCTGACGTGCTGTTGGCGCTTGCTAGACAGGGGAAGCGCAGCCAGCGACTGGGAGAAGTCTTTGTAGCAGTAGCAGCTGTAGACGAGCTCTTTATCTAAAGCTCACTCACTCCGTACAGATAAAAGGGACCATGAAGACAGACGTCTGGAGTTATAGTTTTGCTGACAGCATACAGCCCCACCGACAGCTTCCACACACGGATGACTGAATGACGAACCAGGATGGCCGGAGGAAGGAGAGGACTTGTAGCCCCTCAAAACACTTTTTTAGAAAATATTGTCAGACGATCTAACGTATGGACATTAtcacatagacagacagATACCAATTTTGTTCTTGGGAATGCTCAGATCGTGGACTGGCCCATCGTCTATAGCAACGATGGCTTCTGCAAGCTGTCGGGGTACCACAGGGCGGAAGTCATGCAGAAGAGCAGCacatgcagCTTCATGTACGGGGAGCTCACAGACAAAGATACTAGCCAGAAAGTACGGCTAACGTTTGAAAACTACGAGATGAATTCGTTTGAAATACTCATGTATAAAAAGAACAGAACGCCGGTATGGTTCTTTGTGAAGATAGCCCCTATACGAAACGAACAGGAAAAAGTGGTGCTGTTTCTGTGCACCTTCAGTGACATCACAGCCTTTAAACAGCCAATAGAAGACGAAACCTCGAAAGGTTGGGGGAAGTTCGCTCGGCTAACTCGTGCTCTGACCAGCAGTAGAGGGGTGTTACAGCAGCTACAGCCTACTGTACACAAGGGAGAGAACGTTCACAAGCACTCCCGCCTAGCTGAGGTCCTCCAGCTGGGCTCAGACATCCTCCCCCAGTACAAGCAGGAGACTCCCAAGACGCCGCCCCACATCATCCTCCACTACTGCGCCTTCAAGACCACCTGGGATTGGGTCATCCTCATCCTGACTTTCTACACCGCCATCATGGTTCCTTACAACGTCTCCTTCAAGacCAAGCAGAACAACGTGACGTGGTTGGTGGTGGACAGCATTGTAGACGTTATCTTCCTGGTGGACATCGTGCTCAACTTCCACACTACCTTTGTGGGCCCGGCCGGAGAGGTCATCTCTGACCCCAAGCTCATCAGGATGAACTACCTGAAGACCTGGTTCGTCATCGACCTGCTCTCCTGCCTGCCTTACGACGTCATCAACGCATTCGAGAATGTGGACGagAACTGGAACCATCGAGCTGTCACTCAAgggatCAGCAGTCTGTTCAGTTCTCTGAAGGTGGTCCGGCTGCTGCGTTTGGGCAGGGTAGCTCGTAAACTGGACCACTACATTGAGTATGGAGCCGCCGTCCTCGTCCTGTTGGTGTGTGTCTTTGGCCTGGCTGCCCACTGGCTGGCCTGCATCTGGTACAGTATTGGTGACTATGAGGTGATAGACGAGGAAACGGGCATCCTGCGGACAGACAGCTGGCTGTACATGCTGGGGGAGACGGTGGGCTCTCCATACCGCTTCAACGCCAGCGGCACAGGGAAGTGGGAGGGCGGCCCCAACAAAGACTCGGTCTACATCACATCTCTATACTTCACCATGACCTCTCTGACCAGTATAGGGTTTGGAAACATCGCCCCTACCACCGATGGAGAGAAGATCTTCGCTGTCGCCATGATGATGATCGGATCCCTTCTTTACGCCACCATCTTCGGTAACGTCACCACCATCTTCCAGCAGATGTACGCCAACACCAACCGCTACCACGAGATGCTGAACAGCGTCCGTGACTTCCTCAAGCTCTACCAGGTGCCCAAGGGGCTGAGCGAGAGGGTCATGGATTACATCGCCTCCACCTGGTCCATGTCCCGGGGCATAGATACTGAAAAGGTATTGCAGATATGCCCTAAGGACATGAGGGCAGATATCTGCGTCCACCTCAACAGGAAAGTCTTCAAAGAACACCCTGCATTCAGGTTGGCCAGTGACGGGTGCCTGCGTGCCCTGGCCATGGAGTTCCAGACTATCCACTGTGCCCCTGGCGACCTCATCTACCATGCCGGGGAGAGTGTTGACAGCCTCTGTTTCGTGGTGTCAGGATCCCTGGAGGTCATCCAAGATGATGAGGTGGTGGCCATCTTGGgtaaGGGGGATGTGTTTGGGGATGTGTTCTGGAAGGAGGTGACCCTGGCCCAGGCGTGTGCCAACGTGCGTGCCCTGACCTACTGTGACCTCCACGTCATCAAACGAGACGCCCTGCAGAAGGTTCTGGAGTTCTACACGGCCTTCTCTAACCACTTCTCACGGAACCTGCTGCTCACCTACAACCTGCGGAAGAGGATTGTGTTCAGAAAGATCAGCGATGTGAaacgagaggaggaggagcgCCTGAGACGAAAGAATGAGGCGCCCCTCAACCTCCCGCCGGACCATCCGGTCCGTCGGCTCTTCCAGCGGTTCCGGCAGCAGAAGGAGGCCCGTGTACATCAGGAGCGGGCTGACCCATCCGATGACCTGGAGAGAGGCCAGACCGTTTATGTTGAGCCCATTCCCATCCATgaaatcatcaccaccaccagcaTTGTCACCGTCACCGAAAGTCCAGCCACGCCCATTCCTTCAATTTCCATCTTGGCGTCCACAACCTCCGGCCCCTCAGAAAAAGCCCAGCTCCAGGCCCCATCTCTCCAATTGTCCGAGCCAGCCAAGGTCAAAGGCTGGGGTCGCTTCAAGGAGTCCAACTGGAACAAGGTGTCCAAAGCCGAGTCCATGGAGACGCTACCCGAACGGACCAAGGCAGGGGCAGCCCACGAGTCCCAGACCTCGCTCAAGAAAACCGGCTCGTGCGACAGCGGCATTACCAAGAGTGATCTGCGCCTGGACAACGTGGGGGACGGCGCCCGAACCACGGGCAACACGCCACAGGACCGCAGCCCTGTGGTACCCCCTGAGGTGACCAAGCAGCACGCCTTCTACCCTATCCCAGAGCAGACTCTCCATGCTTCCCTCCTGGAGCTCAAGCTGGAGCTCAAAGAAGACTTGAAGGCCTTGAACACCCGCATGGCCGGCCTGGAGATTCAGCTAGCAGAGGCTCTGAAGCTCCTCAAGGCTCAAAGGAGAGCTCCCAGCTCCCCCAAGCCTCTCTTTGAAATCTCCAGACCCACCTCGCCAGACTCGGACAAGGAGGACATATTTTCGTAGAAGCAGAGGGGCTTATGTTGAGTGTGTGAAGATGGTTAACAGATTCAGAAAATCTTTATTGTCCCAATGCTGGGCAATTTGGTCATAGGGTCAGAGATGTTGCAAGTTGTTGGCGTGTCTCAGCTGAGGCCATTGCTTAGCCCTCAACTTGCTGATGCCTGTGAAAAGCAGCAGATGATGATGCCCCAATGCTGTTAATTTTAAGAGAACCTGGTGGTTTTACCCCTGTGGGCCATGGAACCTTGGAGTTGAGCCTGTTGGTCACTTTGAGGATTCTGGGGTGAGTGCGGTGAAAGGGTTTCAAGGCACAGTGCAGTGACCTTAAGACCACCATGGGTTTGGCTACCCTCTGTGACCTACAGACACAGGTTCACACCTATACTCCTGTACGCTTGTGTTGTGCTAGTCTGCTCGCGCACATCGGCTGTATATTTTGGTAGAgacaatttttttttaccagtCTATGGAGTAAGAGCAGAGCAGCAATGAATGTTGTATTGTTCATCTTCATTATCCTTGTAGATCTCCAGTGGGATCACTATCTATCAGTGGTTCTCAGATTATCTataaggggtgaatacatattttACTTTCTTTGTGCCACCAGTGTACAATAGATTCTGTATGTATTCACAATGTCATTCTATCACCCTGTAATACTTTACAAGACTTTctgtatacactatatatatataaaagtatgtggacaccctttcaaattagtggattcggctatttcagccacacccgttgctaacaagtgtataaaattgagcacacatccatgcaatctccctagacaaacactggcagtagaatggtcttactgaagagctcagtaactttcaacgtggcactgtcatagcaTGCCACTTTTCAAACAAGTCAGttaatcaaatttctgccctgccctggtcaactgtaagggctgtttttcatggttcaagctaggctccttagttccagtgaagggaaatcttaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101040 lncRNA upstream 25881 81834156 ~ 81884237 (+) False LOC110530514
TU101071 lncRNA upstream 35386 81867455 ~ 81874732 (+) True G91773
TU101039 lncRNA upstream 75000 81834634 ~ 81835118 (+) True LOC110530514
TU101035 lncRNA upstream 95954 81813843 ~ 81814164 (+) True G91738
TU101027 lncRNA upstream 108334 81801551 ~ 81801784 (+) True G91731
TU101756 lncRNA downstream 6346 82009999 ~ 82010215 (+) True G92396
TU101784 lncRNA downstream 32814 82036467 ~ 82036918 (+) True G92424
TU101806 lncRNA downstream 60181 82063834 ~ 82064172 (+) True G92445
TU101874 lncRNA downstream 113183 82116836 ~ 82117279 (+) True G92494
TU101878 lncRNA downstream 119073 82122726 ~ 82123006 (+) True G92498
XM_021613691.1 mRNA upstream 2719 81906916 ~ 81907399 (+) False LOC110530526
NM_001281328.1 mRNA upstream 48223 81852648 ~ 81861895 (+) True fih1
XM_021613668.2 mRNA upstream 74627 81824592 ~ 81835491 (+) False LOC110530514
XM_021613648.2 mRNA upstream 97204 81803815 ~ 81812914 (+) False scdb
XM_021613766.2 mRNA downstream 124966 82128619 ~ 82148847 (+) False LOC110530572
XM_036986901.1 mRNA downstream 124966 82128619 ~ 82148849 (+) False LOC110530572
XM_021613789.2 mRNA downstream 168423 82172076 ~ 82179077 (+) True LOC110530588
XM_036986902.1 mRNA downstream 452646 82456299 ~ 82916411 (+) False LOC110530624
XM_021613904.2 mRNA downstream 1403998 83407651 ~ 83442131 (+) False LOC110530670
TU101096 other upstream 2723 81906132 ~ 81907395 (+) True LOC110530526
TU101077 other upstream 30940 81877539 ~ 81879178 (+) True G91779
TU100812 other upstream 368718 81538331 ~ 81541400 (+) False G91541
TU100301 other upstream 1143963 80765114 ~ 80766155 (+) True G91064
TU98806 other upstream 2144759 79751773 ~ 79765359 (+) True acoxl
TU101849 other downstream 124991 82128644 ~ 82148774 (+) False LOC110530572
TU101852 other downstream 124991 82128644 ~ 82145474 (+) False LOC110530572
TU101853 other downstream 124991 82128644 ~ 82145452 (+) False LOC110530572
TU101854 other downstream 124991 82128644 ~ 82145397 (+) False LOC110530572
TU101891 other downstream 138471 82142124 ~ 82142587 (+) True G92511

Expression Profile