RNA id: TU101849


Basic Information

Item Value
RNA id TU101849
length 2280
RNA type TUCP
GC content 0.43
exon number 6
gene id LOC110530572
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 82128619 ~ 82163498 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCTCACAGATAGAATTTTAAGGTCTTTCGAGTGGGAGTAGATCGTCAGCTGGACAAAGCTTTTTTGAAGAATGACTTCGAGGTGCCCCAGATGCACAAAAGATGTGTTTTTTGCTGAGAAAGTGAGCTCGCTGGGGAAGAACTGGCACCGGTTCTGCCTGAAATGCAAACGCTGTAACAAAACCCTGTCGGCTGGCAACCACGCTGAGCATGATGGACTGCCCTACTGTCACAAACCATGCTACGGAACTCTCTTTGGACCCAAAGgtgtgAACATCGGAGGGGTAGGCTCCTACATCTACGAGACTCCTCAACCCACCTTCGACTGCCCCTCCGAGGGATCCCCCACCACACCATGGACCACCATGCAGGTCACCTGGAACCAGCCCAAAGGCAAGGGACAGTAGATCCCAGATCTATTTGTCATGCTAAACAATGTCCACAGGAGCTgagcaagacagcacaaaccgatttgggaccaggctaaagCGAGGGGagtagtagtattattaattAAGGGAGCTTAGAGTAGCATATTGTCTTGATGAAAAACAAATACCCTCCTTAGCTCTCGCAacctcgcgcacacacacactgttggttacgggcttgtaagtaagcatttcacggtatgtttgtattcggcgcatgtaccaataaagtttgatttgatttgaacctgtCCTTTTTATCAGGGCTGCTCAAATAAACTGGCCTTGCCAAGTGCTCCAAGTATGACCGTTAAGGGTTAAATATAGCAACataaagggaatagagagagggttaCTCACCATCAAATGGTTGTAACGACTGTCTTgtttcacacacaaacatacacacacttgtAATGACCCTCTGTTTGTCACTGGGGAGGAATGAGGCATTTTCATTGGCCAGCTTTGATTGGCTCACTTCCTGAAATATTTTGCCTTAATGAGGCTTTTCCTACAGACGAGCCAATTGTGTTAGTGACACTTCACATGTGACAGGGGACGTAATGTTCCAAGTAAAATTGACACATTACTTTGAGTTATATAAAAGGATGGCTTGTATCTAAGATACATTTCTAAGATATAAACCCTCTAAATCAGGACCAATGGTTTTGAAGTGATTTGCAGCACAAGAGATGTCTATCTCTGACTATGTCTTCAAAGAACCATCTCTGATTACAAGATTCAAGATTGACCAACAGATCTTTTTAAAAGATCTTCTCCACAATTAGTGATTAGCATTTCCTTTGAAGATTACAATTATTTTGACGGAAGGGGTGGGAGCATTGCTGATTGCTCATTATTACGATTACGATAAAAAAACTTTTTGCTACAGTATGTATCACACTGCGTTACTATTCAATCTGCAAACTGCGTGGTTCACTTAGAATAGATAAGTTGTGTATATTGAATCATTCTGTAAAGTAGgagattacatttattttacagtaGCAGCTGGACTTGGTCACTGGTATGCTGAGTTTGTGTCTGTTCTTATATTTGCTGTCTGGTTGGAGGAATACAATCTGCATGTTTCTGTGGTGTTAACTTCTGAGTTTAAGTGAGGTTAATTTATAAATTTATGTGGGGTGAACTTATGAATAACCTCCAGTCACTGTTGTTTTTCCCAGTTCTTCCCCCTCCAACCAGGACATTTGCTGGAGAGACCTCACTCTGTCCTGGCTGTGAGAAAGTGGTCTATTTCGCAGAGAAGGTGATGTCCCTGGGTAGGAACTGGCACAGACCGTGCCTGCGCTGTGAGAGGTGTAAGAAGACactgacctctggtggacatgcTGAGCATGAAGGGATACCTTACTGCCATGTCCCTTGCTACGGCATCCTGTATGGACCAAAAGGAGTGAACATTGGCAACGTGGGCTGTTACATCTACGAGAAAGAAGGCATGGCGCAAACTGAAATACCCAGCCAGTCCTAGCCACACACTGAAAGTGAGATGAATGTTAATAGCCAATAGAAAACTCTGGTTAAATGTCCTCGGTTTGGGGTTTCAGTTTGATTTGGGTAATTTCAGTGACTGAATTGATTGAAATTACTGAATTGCGTGACTGAAGTTCTTGTGATGGAACCGACCACGCGATCACAGGTCAACATGAGGTCATGTTTCTTTATTTGTTTTCATGATCACAGAAATGATAACACATGGAAGGGACATTTACAAAAAACATTCTGCATTTTATTCTAATGTATTAACGTAATAATGTTTAGGAATATTTAAATCACGTTTGCAACCTAAAGTTATATAGCATTATACCGGCACACTTTAAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101878 lncRNA upstream 5638 82122726 ~ 82123006 (+) True G92498
TU101874 lncRNA upstream 11365 82116836 ~ 82117279 (+) True G92494
TU101806 lncRNA upstream 64472 82063834 ~ 82064172 (+) True G92445
TU101784 lncRNA upstream 91726 82036467 ~ 82036918 (+) True G92424
TU101756 lncRNA upstream 118429 82009999 ~ 82010215 (+) True G92396
TU101863 lncRNA downstream 258 82149032 ~ 82163498 (+) True LOC110530572
TU101904 lncRNA downstream 11258 82160032 ~ 82161672 (+) False G92523
TU101910 lncRNA downstream 11258 82160032 ~ 82161672 (+) True G92523
TU101921 lncRNA downstream 14799 82163573 ~ 82163891 (+) True G92524
TU101996 lncRNA downstream 37582 82186356 ~ 82186571 (+) True G92582
XM_021613755.2 mRNA upstream 124991 81910118 ~ 82003653 (+) False LOC110530536
XM_036986897.1 mRNA upstream 124991 81910118 ~ 82003653 (+) False LOC110530536
XM_036986898.1 mRNA upstream 124991 81910118 ~ 82003653 (+) False LOC110530536
XM_036986899.1 mRNA upstream 124991 81910118 ~ 82003653 (+) False LOC110530536
XM_036986900.1 mRNA upstream 124991 81910118 ~ 82003653 (+) False LOC110530536
XM_021613789.2 mRNA downstream 23302 82172076 ~ 82179077 (+) True LOC110530588
XM_036986902.1 mRNA downstream 307525 82456299 ~ 82916411 (+) False LOC110530624
XM_021613904.2 mRNA downstream 1258877 83407651 ~ 83442131 (+) False LOC110530670
XM_021613913.2 mRNA downstream 1258877 83407651 ~ 83442131 (+) False LOC110530670
XM_021613972.2 mRNA downstream 1258877 83407651 ~ 83442131 (+) False LOC110530670
TU101096 other upstream 221249 81906132 ~ 81907395 (+) True LOC110530526
TU101077 other upstream 249466 81877539 ~ 81879178 (+) True G91779
TU100812 other upstream 587244 81538331 ~ 81541400 (+) False G91541
TU100301 other upstream 1362489 80765114 ~ 80766155 (+) True G91064
TU98806 other upstream 2363285 79751773 ~ 79765359 (+) True acoxl
TU101989 other downstream 32172 82180946 ~ 82181796 (+) True G92575
TU102659 other downstream 939757 83088531 ~ 83089932 (+) True G93204
TU102821 other downstream 1184492 83333266 ~ 83333576 (+) True G93362
TU102814 other downstream 1323659 83472433 ~ 83473224 (+) True LOC110530741
TU102887 other downstream 1362372 83511146 ~ 83549590 (+) True LOC110530763

Expression Profile