RNA id: XM_021613778.2


Basic Information

Item Value
RNA id XM_021613778.2
length 2558
RNA type mRNA
GC content 0.45
exon number 10
gene id LOC110530583
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 82150127 ~ 82156558 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGTTATTGAATTCTAGAAAGTTTGAAATTGTGAAATATTCTTCAGTTGCTCAAGCAACTCCTTTCTGTCAATGTGTCACCAATTAATGTAGATGAAGGCATTCTTCCACAAACAAAAGAGGTTTAAGTGGTTTTGCACTGTCAAAGATTGATCAATTTCACATGGTTCACCTAACAATGAGACAATGGGACCAACAGACAACCTTTAGACTTGGTGAAAGATTATGACATATTTTTGGGGATTCAACGTTGGTGAATGAGAGAGGGATTGCTGTTGATTTTACGAGTCTGTGGACAAGAAGTCTGTGGACAAAAAGTCTGTGTGGACCAAGTGGAAGATGAAGATGAAGTTCGAACACCTACTCTCGGTGGTCAATGGATTTGGACGGTTCCAGATGATGATCATTATCATCAGCTTTATTGGTCGATTCACCCTGCCGTGTCACTTCCTGCTGAACAACTTCATAGCAGCCGTGCCCTCTCACCACTGTGACCTCAGCGCTCTGGATGATGGCCGCCTCTTTGGGAATCTGACCCAGGAGCAGAGACTGACTGTCAGCATTCCAGTACAGGAAGATGGGACTCCAAGCTTCTGTAAGATGTTCCCAGAGCCCCAGTTCCAGCTCCTTTCCAACTCCAATGACCGTGACCTAGTTACAGTCCCCTGTCAGAATGGATGGGCATATGACAACAGCACCTTCAAATCCACTCTGGCTACAGAGTGGGACTTGGTGTGTGACCAGAAAGGGCTAAATAAGGCAACAACAACCATCTTCTTCATAGGAGTGATGTTCGGAGCTATGACCTTTGGAAGCCTGAGTGACAGGTTTGGTAGGAAGCCCATGCTCCTGGTGTCCTATATCTCTGGCATGCTGTTTGGTTTTGCCAGTGCTTTCTCCACTTCTTTCATCATGTTCGCTGTGCTCAGGTTCTTCACTGGGTTCGGTATCACCGGCATCGTTATCGTCTCATCAGTACTCAGTGTGGAGTGGGTGGACATTGAGCACAGAAAGCTGGTGGGAGTGATTGACAGCCTGTCCTGGAcgtttggttactgcatgattccagcCATAGCCTACTGTGTGACCGACTGGAGACAGCTGACCATAGCGGTCACCTCACCTCTTGCTCTAGCCATACTCACCTGGAGGTGGATTCCTGAATCAGCCAGGTGGCTCATAGCCAATGGGAAGTTTGAGAAAGCTAACTTTTATTTGCAACAATGTGCCCAGATGAACCAGAAGGAGGAGTTTGGATCCAAAATTACACCAGAGACTCTATCCAGTATCATtgtgacagagagaaaagacagaactCACTCCTACCTGGACTTGGTCAGGACACCAAAGATGAGGAGGCTGGCTCTACTAACAGGCATAGTGTGGTATGGTGTGGCATCAACATTTTATGGCATTAGCTTCAACATCACTGGATTTGGACTCAATATCTATCTGACCCAGTTTGTGTACGGTGCCATAGAGCTGCCAGCCAAACTATCAGCGTACTACCTTCTGGATAAGGTGGGCAGGAGAAACACAGAAGTGGGATCTTTACTAGGAGCTGGAATCTGTCTCGCTATCAACATCTTCATACCCCGAGACATGTCTGTTTTAAGGACGGTGGTGGCGGTGTTGGGGAAGGGTTGCTCGGCAACATCCTTCACAACCGTTGTGTTGTATAGCTCTGAGCTGTTCCCTACTGTGGTCAGgcaGAACGGCATGGGCTACAACTCATCCATGGGTCGTCTGGGAGTGTCTCTGGCCCCTCTGATCCTGCTGCTGGACGAGGTGTGGAGGGATCTTCCACAGGTCCTCCTCTGCTCCATAGCCCTGCTAGCTAGCCTGGTGGCCAGGATGCTGCCGGAGACACGGGGCCGCTGTCTACCAGAGACCATCCAGGACGTCGAGGACGGGCAGACAGGGAAAGGTTTGGCTGGATCCCAAGTTGTGGAAACAACAGATATCCCTCTCAAATCAAAGGACAATGATGAGGTGGAAAATGGATACTAAGATTCTTCCTGTATATATTTTTGATATGCCCAAATGTGcaccctgtggaatgcttttgacaacttgtagagtctatgcccgatgtaactcaatattaggaaggtgttctttaatgttttgtacactcagtgtgtttgTTACACATCAAAAACAACCTTCAAACCTCTCACTGATCTTATAAAAAAAGATAAACGAAATACAAGAGaacaaaagagaaagagagcctGAAGTGTGAAGCATAATTCAAGTGTTACTCGTCACATACAAATGATGATTTACACTTAATTCCAATATTACATGATCTTATTTAGAAAAGACTCCTTTTCTGTTTCATATCAATGAGGAACAAGATTATCTTTGATAATGTATCATAACTCTTTGTGCATTATTCTTCACCATAACCATTGGCAAATGCATGCAATCAATCTTTAATATTGAATATGAGCCTATTGTTGTATACACattttatacagtaccagtcaaaagtttggacacacctactcattcaacgttttttctttatttatactattttctacaatgtagaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101944 lncRNA downstream 35882 82113993 ~ 82114245 (-) True G92547
TU101930 lncRNA downstream 57467 82092430 ~ 82092660 (-) True G92533
TU101835 lncRNA downstream 64670 82085159 ~ 82085457 (-) True G92474
TU101812 lncRNA downstream 84369 82065534 ~ 82065758 (-) True G92451
TU101810 lncRNA downstream 85259 82064615 ~ 82064868 (-) True G92449
TU101968 lncRNA upstream 3849 82160407 ~ 82161743 (-) False G92566
TU102041 lncRNA upstream 7336 82163894 ~ 82164113 (-) True G92622
TU102049 lncRNA upstream 15458 82172016 ~ 82179071 (-) False G92629
TU102048 lncRNA upstream 21310 82177868 ~ 82179214 (-) True G92629
TU102056 lncRNA upstream 22737 82179295 ~ 82180152 (-) True G92636
XM_036989917.1 mRNA downstream 244468 81863824 ~ 81905659 (-) True LOC110530522
XM_036986874.1 mRNA downstream 424361 81648412 ~ 81725766 (-) False LOC110530466
XM_036986871.1 mRNA downstream 424361 81648413 ~ 81725766 (-) True LOC110530466
XM_021613577.2 mRNA downstream 520401 81607478 ~ 81629726 (-) False LOC110530475
XM_036986856.1 mRNA downstream 592749 81545225 ~ 81557378 (-) True qrfpra
XM_021616911.2 mRNA upstream 26335 82182893 ~ 82187206 (-) True LOC110532767
XM_021613824.2 mRNA upstream 34360 82190918 ~ 82198422 (-) True LOC110530609
XM_036989927.1 mRNA upstream 53944 82210502 ~ 82218883 (-) True LOC118966721
XM_036989935.1 mRNA upstream 76022 82232580 ~ 82245632 (-) True LOC118966722
XM_036989946.1 mRNA upstream 101488 82258046 ~ 82266018 (-) True LOC110532773
TU101510 other downstream 532803 81607478 ~ 81617324 (-) True LOC110530475
TU101313 other downstream 968664 81180824 ~ 81181463 (-) False LOC110532756
TU101255 other downstream 1113989 81035575 ~ 81036138 (-) True G91947
TU101251 other downstream 1118769 81030832 ~ 81031358 (-) True G91943
TU101249 other downstream 1121515 81027908 ~ 81028612 (-) True G91941
TU101970 other upstream 3849 82160407 ~ 82161743 (-) False G92566
TU101980 other upstream 3849 82160407 ~ 82161743 (-) True G92566
TU102078 other upstream 137255 82293813 ~ 82294303 (-) False LOC110532782
TU102047 other upstream 138754 82295312 ~ 82301847 (-) True LOC110532782
TU103453 other upstream 793056 82949614 ~ 82961322 (-) False LOC100301648

Expression Profile