RNA id: XM_036989946.1


Basic Information

Item Value
RNA id XM_036989946.1
length 4493
RNA type mRNA
GC content 0.48
exon number 4
gene id LOC110532773
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 82258046 ~ 82266018 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAGCGAATTCGGATCCGTTCCGAGATCATCGGAGAGCCTTTTCGATTTATCAAACCCATTTACCGAGGTTTTGACAAAAATGAATGAGAAAGAACTGCTCCATGGGCTGAACGACCGTTTCGCCGGATTCATAGAGAAGGTGCGTCATTTGGAGCATGAAAATGAATTGTTTGAGAGGGAAATCGAGGAAATCAAACTAAAGGCACAGTCCCCTGCGTCTCTGGCCCAGGAGCACGAGCCGGAGCTTATGGACCTGAGGAACCTAGTTCATGACATCTCCCTTCAGAAGCGTCAGATCGAGATAGAGCATCAGAACCTGGAGGAAGATTTCCTCATCTTGAGAGACAAGTATGAGCAGGAGGCACGTGACCGCTCGAACGCAGAGAACGGTATCCTTGTGCTGAAAAAGGACGCCAACGATGCATACCTTGCCAAACTTCAGTTGGACAACAAAGCGCAGTCTTTGGTGGACGAGATCCACTTCCTGAAGAACAACCATGAGGACGAGATATCAGAAATGGTGGCCCAGATCCAAGAGGCTCAAGTAACGGTCAAGGCATACAACTTTGGCAAACCTGACATCACAGAGGCTCTCCGGGACATCCGTGTGCAGTTAGAAGGTCACGCCACTTCCGACATTCAGCAGGCCGAGGAGGGCTTCCGTGTCCAGTTCGCAAAGTTAACCAAAGCGGCAGAAAGTAACAGGGAGGCGTTGAAGGCAACCCAACAGGAGATCCAGGAGAATAGAAGGCACCTGCAGGGGAAGACAATTGAACTGGACTGTGGTAAAGGAATGAGAGAGGCCCTGGAAAAACAACTACAAGAGCTGGAGGAGCGTCACTATGCAGAATTGATTCATTACCAGGACACTATCAGGCAGCTGGAGAATGAGCTGACCAATGCTAAACTAGACATGTCTGGCTACCTGAGAGAGAACCAGGACCTGCTGAATGTCAAAATGGCTTTGGATGTGGAGATTCTCTCTTACAGGAAACTCCTGGAGGGTGAGGAGTCCCATCTGTACACCATCTCTGACACCCACATCTCCATGCCCTGCATCTACCGCCAGTCCCCCGTCTACACCCTGCCTTGCCTGGCCCGGCAGGGAGGGCCCACACGCAGGTCTGAACCCCAGTACAAGTTTGTTGAGGAGATCATCTCTGAGACCACCAGAGACATGGAGATGTCCGAGATTGAGGAGAAAGGCTCCGAGGAGACGgtcgggggagagggagacaagttgAGACAGAAGCAGGGAGAAGAGAGTGACAAAGCTGAGAGGAGAAGTGGGGAACAGGTGGATGAGCATAAAGAGAAAGCTAGAGGTAAAGTGGATGTTGAAGTGGACGCCCCGGAGGAAGAGGGTGAACAGGAGGAAGAGTCTAAGAGACAGCAGATGGTCACATCAGCAGAGGTCGAGGTAAATGGAGATGGAGTTAGCCCTAGTGAGGGAGaaaatggagaggagggagatgatgaaagagaggaggaaaaggggggtgAGCCAGATGCAATCAAAAAGACAGAGGACATTGACAGAGGTGAAAATACACAAAGTGAAGTCAAATCAGCTGAGGCCAccagtgagggagagaaggaaaaacTGGACACAACAGAGAAGCTAGACAGCGAGATAAACGAGACATTAGAAAAAGATGACACCCCAAAACAAGGCAAATCCCAACTAGAGGTTCCCATGAATGGTGACATCTCAACAGAACCCAAAACGTCAGAGTCAGAGGATAGCAAAACAGGAAGTTCAATAAAGGGTGAACCACAGGTCCCCACAGAGGACATCTCCAAAGAACCCAAAAAGGTGTCAgaggagagaaaaatagaaagcCCTTTACAAGAGAAAAAAGAGGTAGATCTGAAAGAGGAGAGTGCCCCAACAGAGCAACAACAAGATAGCCCAAAAGAAAGTCCCATCAAAGAGGGGAAAAAGGTAGATCTGACAGACCAGAGTGCCCCAACACTGGAGCAGAAACCTGATCAGAAGGAGCACAGAGAGTCAGACCAACCTCAAGAGGCAGAGAGTGCTGTGACAACACAAGAAGAGGATCTCCCTGAGCCCACAGAGAAGGACATGGAATCCCCTGATAACACTGCAGAGCTCAACACCAGTTCAACCAAGGAGACAGTGGAGCAGGTGAAGTCACCTGATGATTCTGGTGTAAAAACGACACAAGATGAGAGAACAGTAGGAGGTAAAATGCCAGACAGAATTCTCAGCACAACAAGTGAGTGTAAGGAAGACCTTGTGCAAAAGATTCCTAAAAAGGAGGTGGGTCCGACAGAGCAAAAAGTGAGCAGCAAGGATGATAGTGTAAAAATTGTTGGCAGTGAAAAGGTCACAAAAGATGTCTCAATGGGTGAGGAAAAAAGGAAAGAATCTGAGACATCCCCCAAACCCGACCCAACTGTCACCCCTAAAGAAGAAACTTCCATTAAACCAGAACCAGCAGTCACTGCAAAAGAAGAAACATCCCCAAAACCAGAACTAGCAGTCACCACTAAAGAAGAAACTTCCCCAAAACCAGAAATAGCAGTCACCACTAAAGAAGAAACGTCCCCAAAACCAGAACTAGCAGTCACGGCTAAATTAGAAACTTCCCCAAAACCAGAACTAGCATTCACCACTAAAGAAGAAACGTCCCAAAAACCAGAACCAGGAGTCATCCCAAAGGTAGATACTTCCCCAAAACCAATCTCAACCATCACCCCTAAAGAAGAAACGTCCCCAAAACCAGAATCAGCAGTCACCCCTAAAGATGACACATCCCCTAAACTGGACCCCACTGTCACTCCTAAAGAAGAAACAACACCGCATCCAGAGCCAACTGTCACCCCTAAAGAGGAGACATCTCCTAAACCATACCCCACTGTCACCCCTAAAGAGGAAACACCCCCAAAACCATTCCTGACAGTCGCCACTAAAGAGGAGACATTCCCTAAACCAGAACTATCAGCCACCGCTAAATTAGAAACTTCCCCAAAACCAGATCTAGCAGTCACCCCTAAAGAACAAACTTCCCCAGAGCCAGAACCAGCAGTCACCCCTAAAGAAGAAACGTCCCAAAAACCAGAACCAGGAGTCATCCCAAAAGTAGAAACTTCACCCAAACCAGAACTAGCAGTTACCCCTAAAGTAGAAACGTCCCCAAAACAAAGCTCAACCATCACCcctaaaaaagaaacgtccccaaAACCAGAACCAGCAGTCGCCCCTAAAGATGACACATTCCCTAAACCGGACCCCACTGTCACTCCTAAAGAAGAAACAACCCCGCATCCAGAGCCAACTGTCACCCCTAAAGAGGAGACATCCCCAAAACCATTCCCGACAGTCGCACCTAAAGAGGAGACATTCCCTAAACCAGAACTATCAGTCACCGCTAAATTAGAAACTTCCCCAAAACCAGATCTAGCAGTCACCACTAAAGAACAAACTTCCCCAAAAGCAGACTCAACCATCACCTTTAAAGAAGAAATTTCCCCAAATCCAGAACCAACAATCACCCCTAAAGAAGAAAATTCCCCAAAACCAGAACTAGCAGTCACCCCTAAAAATATAACATTCCTTAACCCTGAGCCCAGTGTCACTCCTAAAGAAGAAACAACCTCTCAACCAGGGCCAACTGTCACTCCTAAAGAGGAGACACCCCCTAAACCGTACCCCACTATCAACCCTAAAGAAGAAACTTCCATTAAACCAGAACCAGCAGTCACCCCTAAAGAAGAAGCTTCCCCAAAATCAGATTTAACCATCACCCCTAAAGAAGAAACTTCCCCAAAACCAGATCTAGCAGTCACCCCTAAAGTAGAAACTTCACCAAAACCCGAACTAGCAGTCACGGCTAAAGTAGAAACTTCCCCAAAACCAGTACTAGCAGTCACACCTAAAGATGAAATTTCCCCAAAACCAGAACCAGCAGTCACCCCTAAAAATGAAACATTCACTAACCCAGACCCCACTGTCACTCCTAAAGAAGAAACTTCCCCAAAACCAGAACCAGCAGTCACCCCTAAAGTAGAAACTTCCCCAAAACCAGAACCAGCAGTCACCGCTAAAGTAGAAACTTCTCCAAAGCCAGCAGTCACCACTAATGTAGAAATTTCCCTAAAACCAGAGCACACTGTCACTCCTAAAGAAGAAACAACCCCGCAACCAGAGCCAACTGTCACTCCTAAAGAGGAGACTTCCCCTAAACCGTACCCCACTGTATCCACTAAAGAAGAAACATCCCCGCAACAGGAACCAACAGTCACCCCTAAAGAGGAGACATCCCCTAAACCATATCCCACTGTCACCACTAAAGAAGAAACATCCCCTAAACCGTTCCCCACTATTGCCCCTAAAGAGGAGACATCCCCTAAACCAGAACGAGCAGTCACCACTAAAggtaAGGgtaacttcaagttccttggcttccacatcaccaacaaactaacatggcccAAGGACACCAAGAAAGTCATGAAGAGggtatga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102051 lncRNA downstream 34287 82200416 ~ 82223759 (-) True G92631
TU102050 lncRNA downstream 54774 82202855 ~ 82203272 (-) True G92630
TU102057 lncRNA downstream 68481 82188300 ~ 82189565 (-) True G92637
TU102056 lncRNA downstream 77894 82179295 ~ 82180152 (-) True G92636
TU102048 lncRNA downstream 78832 82177868 ~ 82179214 (-) True G92629
TU102052 lncRNA upstream 4637 82270655 ~ 82271334 (-) True G92632
TU102059 lncRNA upstream 25759 82291777 ~ 82292107 (-) False LOC110532782
TU102085 lncRNA upstream 35884 82301902 ~ 82302118 (-) True G92661
TU102093 lncRNA upstream 48305 82314323 ~ 82314551 (-) True G92669
TU102062 lncRNA upstream 56887 82322905 ~ 82323402 (-) True G92642
XM_036989935.1 mRNA downstream 12414 82232580 ~ 82245632 (-) True LOC118966722
XM_036989927.1 mRNA downstream 39163 82210502 ~ 82218883 (-) True LOC118966721
XM_021613824.2 mRNA downstream 59624 82190918 ~ 82198422 (-) True LOC110530609
XM_021616911.2 mRNA downstream 70840 82182893 ~ 82187206 (-) True LOC110532767
XM_021613778.2 mRNA downstream 101488 82150127 ~ 82156558 (-) True LOC110530583
XM_036989948.1 mRNA upstream 9051 82275069 ~ 82288547 (-) True LOC110530601
LOC110532782 mRNA upstream 25774 82291792 ~ 82301867 (-) False LOC110532782
XM_021613833.2 mRNA upstream 173124 82439142 ~ 82442325 (-) True LOC110530617
XM_036986937.1 mRNA upstream 683591 82949609 ~ 83267157 (-) False LOC100301648
XM_036986941.1 mRNA upstream 683591 82949609 ~ 83267157 (-) False LOC100301648
TU101970 other downstream 96303 82160407 ~ 82161743 (-) False G92566
TU101980 other downstream 96303 82160407 ~ 82161743 (-) True G92566
TU101510 other downstream 640722 81607478 ~ 81617324 (-) True LOC110530475
TU101313 other downstream 1076583 81180824 ~ 81181463 (-) False LOC110532756
TU101255 other downstream 1221908 81035575 ~ 81036138 (-) True G91947
TU102078 other upstream 27795 82293813 ~ 82294303 (-) False LOC110532782
TU102047 other upstream 29294 82295312 ~ 82301847 (-) True LOC110532782
TU103453 other upstream 683596 82949614 ~ 82961322 (-) False LOC100301648
TU103475 other upstream 683596 82949614 ~ 82961322 (-) False LOC100301648
TU103482 other upstream 683596 82949614 ~ 82961322 (-) True LOC100301648

Expression Profile