RNA id: LOC110532782


Basic Information

Item Value
RNA id LOC110532782
length 1004
RNA type mRNA
GC content 0.45
exon number 8
gene id LOC110532782
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 82291777 ~ 82301867 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTCTGGTTAAATAGTAGACCTTCAATAATGTCTCTTTGGTGTTCACTCTATATAGCTGAATAGACACACTTCCAAAATGGCTCCAGATATCAAGATGTATTTCTGCTTTCAGCTTGTTCTTGCACTAACAGGCACAGGAATAGGATCTGCCCTGCCAGGTAAGAGCCACAGTGGAGGGAAGAACAACCTAGTGCTGCAGTATGTCGTGAACAACTCACTGAGAGAACATCCTGTCATGACCAAACTCAGACTGAAAACCCTTGAGGACCCATGGAGCATCATGCTGGTTGCTAGTGAACAAGCACAACTGATGGCAAATCTGGCCAAACTGATCAATGCCAGCAAAACCATTGAAATTGGGATGTACACAGGGTACAACACCCTGTTGGTTGTACCACAAAACCAGCCCCCAACTGGAgaccagtgcgcctccacagcccaggaAAGTCCTGTGCCAGCTCGCCGCACTTGCCGTGCTAAGGTTGTCATCTGTCCAGGACActttgtgccagctctacgctccagacctacagtgcgcctccacagtccggTACATCCTGTGCCAGCGCCACGCACCAAGCCTCCTGTGCGTCTCCCCAGCCCGGCCGGAGTCGAGGATAAAATTACTGTCCATCTTCAAATGTGTATAAAAACACTGGATGAGTTGATAGCTGCTGGGGAAGTTGGAACCTATGACTTTGTTTTCATCGATGCGGATAAAAGGAACTATGACAGATATTACGAGAAGTCTCTTGAGCTTGTGAGACAAGGGGGCATCATTGCCATCGATAATGTACTCTGAAGTGGTAAAGTGGTGGACCCTGCTCCTGATGACCTGACCTCCCAGGCTCTGGACAAGCTCAACAAGAAACTCCACACAGACCAGAGGATTGATCTGAGCATGCTCACTGTGGGCAACGGACTCGCCCTGGCCATCAAACGCTAACGATAACCCATGCTAACTCATACTAACCCGTGATGACTCATGCTTAACCCATGCTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102053 lncRNA downstream 272 82246850 ~ 82291520 (-) True G92633
TU102052 lncRNA downstream 20458 82270655 ~ 82271334 (-) True G92632
TU102051 lncRNA downstream 68033 82200416 ~ 82223759 (-) True G92631
TU102050 lncRNA downstream 88520 82202855 ~ 82203272 (-) True G92630
TU102057 lncRNA downstream 102227 82188300 ~ 82189565 (-) True G92637
TU102085 lncRNA upstream 35 82301902 ~ 82302118 (-) True G92661
TU102093 lncRNA upstream 12456 82314323 ~ 82314551 (-) True G92669
TU102062 lncRNA upstream 21038 82322905 ~ 82323402 (-) True G92642
TU102101 lncRNA upstream 28746 82330613 ~ 82330927 (-) True G92677
TU102113 lncRNA upstream 35470 82337337 ~ 82337579 (-) True G92689
XM_036989948.1 mRNA downstream 3245 82275069 ~ 82288547 (-) True LOC110530601
XM_036989946.1 mRNA downstream 25774 82258046 ~ 82266018 (-) True LOC110532773
XM_036989935.1 mRNA downstream 46160 82232580 ~ 82245632 (-) True LOC118966722
XM_036989927.1 mRNA downstream 72909 82210502 ~ 82218883 (-) True LOC118966721
XM_021613824.2 mRNA downstream 93370 82190918 ~ 82198422 (-) True LOC110530609
XM_021613833.2 mRNA upstream 137275 82439142 ~ 82442325 (-) True LOC110530617
XM_036986937.1 mRNA upstream 647742 82949609 ~ 83267157 (-) False LOC100301648
XM_036986941.1 mRNA upstream 647742 82949609 ~ 83267157 (-) False LOC100301648
XM_036986935.1 mRNA upstream 647742 82949609 ~ 83267158 (-) False LOC100301648
XM_036986933.1 mRNA upstream 647742 82949609 ~ 83267159 (-) False LOC100301648
TU101970 other downstream 130049 82160407 ~ 82161743 (-) False G92566
TU101980 other downstream 130049 82160407 ~ 82161743 (-) True G92566
TU101510 other downstream 674468 81607478 ~ 81617324 (-) True LOC110530475
TU101313 other downstream 1110329 81180824 ~ 81181463 (-) False LOC110532756
TU101255 other downstream 1255654 81035575 ~ 81036138 (-) True G91947
TU103453 other upstream 647747 82949614 ~ 82961322 (-) False LOC100301648
TU103475 other upstream 647747 82949614 ~ 82961322 (-) False LOC100301648
TU103482 other upstream 647747 82949614 ~ 82961322 (-) True LOC100301648
TU103830 other upstream 1182189 83484056 ~ 83485937 (-) True G94201
TU104323 other upstream 1499465 83801332 ~ 83802471 (-) True G94613

Expression Profile