RNA id: XM_021613833.2


Basic Information

Item Value
RNA id XM_021613833.2
length 2764
RNA type mRNA
GC content 0.47
exon number 2
gene id LOC110530617
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 82439142 ~ 82442325 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTCAGATGCTTTTGAAGTGAGCATTTCTACCAGTTCGTACTTTGGGAGTATAGAGAGCGGACCTGCTGGGAGATACAGAACGCGCTATGCCTATGATGCAAGACGCAGCCTCGGATCCGCGATAACATCGCAATCACTCTCCTGTATCTTCTTCCTGCTTACCAGCCGCACCTTCTTATTTTCCTCTCACTATAAGGATTATTACACGCAATACCAACACTTTTTTTCTCTCCTGATTTTCGAGAGATGTTGTAATTGCTTTTCACCTTTCTTGATGAATTTGATAAATGCATTACCGACTAATTTCGTGAGAATTAGGACATGATCACATCGCCCTCGGTGTCTGCTCTGAGCAATAGTAATACTCATCTAGTCTGGGAGAGCATCGACTCTCGGAATAACATCAACAAGCCTTTTCTTCATTCCGTTCCCCCGTCGGACCATCTACGGCAAGCTAAGCGAGTTCCCATCAAGGTTTTGAGAATGCTTACGGCACGATCAGGACACATTTTGCACCCAGAGTATCTTCAACCGTTACCATCTACCCCGATTAGCCCTATTGAGCTAGATGCCAAGAAGAGTCCATTGGCACTGCTGGCGCAGACATGCTCTCAAATCGGTAAACCAGACCCCCCTCCCTCTTCCAAACTCTCCTCGATTACATCTAATGGATCTAGTGACAAGGAATCCAAATCCGGTCCATTAAAAATGAGCGACATCGGTGTGGATGACAAATCTAGCTTCAAACCCTATTCGAAACCGTCCGATAAGAAGGACTCGTCCTCGGGCGTTTTGAGTGGAGAGAAGACTGGTTTCCGAGTACCGAGCGCCACCTGTCAGCCGTTCACGCCACGGACAGGCAGCCCCAACTCCAGCACTTCTGCCTCTCCCATGCCGTCTGAGGGGAAGtgtggagacagggaggacaaGAAAGATTCAGATTGTAATAAAAATGGCACAACGGACGGATCTGGAACCACTAACAGCCACAGCAGGATAAGCGTGAGTTGCGGTGGAATTAACGTGGAGGTGAACCAGCACCAGGAGACGCCCGGGTCCAAAGCCCCGTCTTCGGAATCGTCCTCCATAACCTCCGCTTCCTCAGCTTCCGGACTGGGGTCAGGACTTGTAGCCCCGGTCTCTCCTTACAAACCTGGTCAGACAGTTTTTCCCCTGCCGCCTGCTGGCATGCACTACCCCGGGAGTTTAGGGGCCTACGCAGGTTATCCCCAACACTATCTCCCCCACGGCGGCAGCCTGGTTAACGCACAGCTGGCCAGCATGGGCTGCAGTAAAGCCGGATCCAGCCCACTGGCTGGGGCCTCTCCACCCTCCATCATGTCAGCCAGCCTGTGTAGAGACCCTTACTGCTTAAGTTACCATTGTGCCAGCCACTTAGCGGGCGCTGCCAGTGCCTCACAGCAGTGCCACGACAACGCGATGAAATCCGGGTACCACCACATGTACCCGACACACCTTTTGCACGGCATGCACTCCTCTCCGCAGTCGTTCAGTGGACACCCTTTGTACCCCTATGGTTTCATGCTCCCCAACGACCCACTTCCTCACGTCTGTAACTGGGTGTCTGCGAACGGACCCTGCGACAAGCGTTTCTCCTCTTCCGAGGAGCTGCTGATACACCTGCGGACGCACACCGCCTTCACCGGGGCGGAAAAGTTGATATCGGGTTACCCTAGTTCCTCATCTTTAGCGAGTGCTGCGGCTGCCGCTATGGCGTGCCACATGCACATGCCGCAGTCCGGAGGCCCTGGAAGCCCCGGGACACTGACCCTGAGGAGTCCGCATCACGCGTTGGGACTAAGCAGCCGTTACCATCCGTACTCCAAGAGCCCCCTGCCTACCGGAGCCCCTGTTCCCGTTCCCGCAGCTACCGGGCCATACTACTCCCCATATGCACTGTACGGCCAGAGACTCACCACAGCAACGGCGCTGGGATACCAGTGAAACACACTTGACTTTTGAAAAGTTTATAATGATAAAATGCAAATATAAAGACTTTTATATCAACGCTCCACCTATGGACAGGATCCGTggactgtatttatttatgtcgACTGAAAGCGGACGATAATAGCTACAAATTGAAGATATTTGAGAGACTCGAAGTGCATTATGTTTAAACTGAACTCTATAGGTAAAATGAAAACACACATGGTAGAATACTAATAAAATAGAGGTTTTCATTTCGATGTTCATTTGAAATTGATATGATTGTATTGTTCTTATTTAATGTTTCATTGAAAAGAAAATAATTGACATGCATGTTTGTTTCTTAAAATCCCAAATTGTCCACATTTAAAATTGCCGTTATTTTTCAGGTGTATACCAGGGAAAGAGAATTGGTATTTTTTTGTATGTATTCTGGAAAAATAAGAAACGATTCTGTTCCATATTTCCGTGTGCCTCCTTTTATGATAACAACAAGACCTACATTTTTAACATGCTATTTCATTAAACAGTTTCTGGTTTCTTTATGATTTTAAAGTGACATTATGAGATGTGCTGATCTGGGAAGTTAATCTTATTAACTGGTTGCCTATACAAACAACTGGAACGTTATTTACAGAGTaggctatgtttttttaaatgttcactTTAAAGTGCACTTTATTTCTACAACATCTCTATAGAGtttaatgtgattttttttttagcatGATACATTGTTTTTAAACTAAATCATTTGACTTAAGTTGAAACACTAGGCTATTTTAACACTAAACAGACAACTTTGAAAACGAA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU103025 lncRNA downstream 25930 82412301 ~ 82413212 (-) True G93538
TU102193 lncRNA downstream 49093 82389225 ~ 82390049 (-) True G92765
TU102172 lncRNA downstream 62754 82375704 ~ 82376388 (-) True G92746
TU102166 lncRNA downstream 67487 82371378 ~ 82371655 (-) True G92740
TU102163 lncRNA downstream 69913 82368984 ~ 82369229 (-) True G92737
TU103118 lncRNA upstream 78419 82520744 ~ 82524861 (-) True G93622
TU103121 lncRNA upstream 79043 82521368 ~ 82521757 (-) True G93623
TU103127 lncRNA upstream 88744 82531069 ~ 82531648 (-) True G93627
TU103130 lncRNA upstream 89070 82531395 ~ 82532285 (-) False G93629
TU103129 lncRNA upstream 89510 82531835 ~ 82532285 (-) True G93629
LOC110532782 mRNA downstream 137275 82291792 ~ 82301867 (-) False LOC110532782
XM_036989948.1 mRNA downstream 150595 82275069 ~ 82288547 (-) True LOC110530601
XM_036989946.1 mRNA downstream 173124 82258046 ~ 82266018 (-) True LOC110532773
XM_036989935.1 mRNA downstream 193510 82232580 ~ 82245632 (-) True LOC118966722
XM_036989927.1 mRNA downstream 220259 82210502 ~ 82218883 (-) True LOC118966721
XM_036986937.1 mRNA upstream 507284 82949609 ~ 83267157 (-) False LOC100301648
XM_036986941.1 mRNA upstream 507284 82949609 ~ 83267157 (-) False LOC100301648
XM_036986935.1 mRNA upstream 507284 82949609 ~ 83267158 (-) False LOC100301648
XM_036986933.1 mRNA upstream 507284 82949609 ~ 83267159 (-) False LOC100301648
XM_036986949.1 mRNA upstream 507284 82949609 ~ 83267159 (-) False LOC100301648
TU102047 other downstream 137295 82295312 ~ 82301847 (-) True LOC110532782
TU102078 other downstream 144839 82293813 ~ 82294303 (-) False LOC110532782
TU101970 other downstream 277399 82160407 ~ 82161743 (-) False G92566
TU101980 other downstream 277399 82160407 ~ 82161743 (-) True G92566
TU101510 other downstream 821818 81607478 ~ 81617324 (-) True LOC110530475
TU103453 other upstream 507289 82949614 ~ 82961322 (-) False LOC100301648
TU103475 other upstream 507289 82949614 ~ 82961322 (-) False LOC100301648
TU103482 other upstream 507289 82949614 ~ 82961322 (-) True LOC100301648
TU103830 other upstream 1041731 83484056 ~ 83485937 (-) True G94201
TU104323 other upstream 1359007 83801332 ~ 83802471 (-) True G94613

Expression Profile