RNA id: XM_036986941.1


Basic Information

Item Value
RNA id XM_036986941.1
length 10165
RNA type mRNA
GC content 0.43
exon number 28
gene id LOC100301648
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 82949609 ~ 83267163 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTGTGGCTTTTTCTAGAtctccgactttccgacctgacgTCATGACTTGATCTAGTTTTTTCCCGAGTTCTCAGTGGTCTTGAAAGCACAATAGGAACTGACTGAGACAAGTGCCTGGCACTTGGTATAAACATCAGCGCTTTGCGGTATTACTGCTTTCTGACCATCTTTGAGCTACGCACCGCCCCTCCGACCTGTAAATCTCTCTAGCATTCAGTGGAGCGAGCGGCTCTGACAGGCACTATCAACTGGCCGATCTGCGCGACCCTGGGCTGGATCAAGCGGAAGGAATGGGGACAGTCAGTTGCGAAGGCGACATCACCCGAGCGCTTATATGTCAGAAAGCGAACACTCCGCTAGATGATGTCGTTTGTGTTTTCGCatcgtggcaacagtttggggactTGAAATAGCTTCTGCCATCCAAAAAACATCGAGGCTATCGATTAAATTGGTGTTTAGAAAAGTGAAATCAATTTTCCGCTGTTAATCGACCGAATCCCTGGATGGAAGACGACTTGAGAGGTCGGGCAGAAACTGTTTGAAGAAAACAGCCCTTTTCAATGTCGCTGCGCCTATCATAATCTGAAACATCATTGGAAGCCTCGACGGCTGCTAGATGAGACAGACCATCTTTGCCATGGCATTGGTCCTGAAAAACTCGGAAAAGCTCTCAAAATGAAAAGCGCTCAACGTTTGTCATTACTGCGGATTTAAATGCCTCTCGCGAATGGACACCGACCGGCTATTTCGGTCCAGTTAGTGCGTGCGGCGTTTTCGACTGTCGCGGAAATCTGAAATAGATTGAAATAAACATACAATTAATTAAGTGCGGGTGAGAATACACAACGcatagttttttttaaagcaataTGGCTGGTGAGTGGGGCTGGGGACGCTGGCATAGGCTCTCCAAGGCTTCTAGATGCTAGATGAGGCGGACGCCACCGTTACCCATGGAAGCGGCAACTCTATGATGAGTAGAAATAACTATTTTAACAAAAATCCGGACTCCTCGATCTCTATGTCCAAGATGGACGTGATCATCCCCTTCTCGCCAGACGTGCCCTGCGACAACAATGGCCAGCGCATGTGGTGGGCATTCCTCGCCTCCTCCATGGTCACGTTTTTCGGGGGTCTCTTCATCATTCTCCTGTGGAGGACCCTCAAATACCTGTGGACCGTCTGCTGCCACTGTAACATCAAAAAGAAGGAGGCCCAGAAGGTAAATAACCCTGCTAACAGTCAGGCAGCAGACGGTACAGCTAAGGGTCCTGATGAGAAGGACGAAGTGGTCCCTGCCAGCGAGGTGGGCTGGATGACATCCGTTAAGGACTGGGCCGGGGTCATGATATCAGCACAGACACTCACCGGCAGGGTCCTgGTTGTACTAGTTTTCGCTCTCAGCATTGGAGCACTTGGAATATACTTTATAGATTCTTCTGATCCCATAGAATCCTGTCAGAATTTCTACAAAGATTTCACATTACAGATCGACATGTTCTTCAATgtcttcttcctcctctactTTGGCTTGCGGTTCATAGCAGCCAATGATAAGCTGTGGTTCTGGCTGGAGGTCAACTCAGTTGTGGACTTCTTCACTGTTCCTCCTGTCTTCGTATCTGTCTACCTGAACAGGAGCTGGCTGGgtttaaGATTCCTGAGAGCCTTGAGATTGATACAGTTCTCTGAAATTTTACAGTTTTTGAATATCTTAAAAACAAGCAATTCCATCAAGCTGGTGAACCTGTGTTCCATCTTCATAAGCACATGGCTAACAGCTGCCGGATTCATACATTTGGTGGAAAACTCAGGGGATCCTTGGGAAAACTTCCAAAATTCCCAGTCACTTTCCTATTGGGAATGTGTCTACTTGCTCATGGTCACTATGTCAACAGTGGGCTACGGGGACGTCTATGCAAAAACCACCCTGGGACGCCTGTTCATGGTCTTCTTCATCCTCGGGGGTTTGGCCATGTTTGCCAGCTACGTCCCTGAAATCATAGAGTTAATAGGAAACCGCAAGAAATATGGTGGTTCCTATAGTGCGGTTAATGGGAGAAAGCACATTGTGGTTTGTGGTCATATTACACTCGAAAGTGTCTCCAACTTCCTCAAAGACTTCCTACACAAGGACAGGGATGATGTCAATGTAGAAATTGTTTTTCTCCATAATATTTCCCCTAATCTTGAGCTGGAAGCCTTGTTCAAACGCCACTTTACCCAGGTAGAGTTCTACCAGGGTTCTGTTCTCAACCCTCACGATCTGGCCAGAGTGAAGATTGAGTCAGCAGACGCCTGTCTGATTCTGGCTAATAAGTACTGTCCAGATCCTGATGCTGAAGACGCCTCCAACATCATgagGGTCATCTCTATCAAGAACTATTCCCCCAAGATACGAATTATCACTCAGATGTTACAATACCATAACAAGgctcaCCTGCTCAACATTCCTAGCTGGAACTGGAAGGAGGGGGATGATGCTATCTGTCTAGCAGAGCTGAAGGCTGGCTTCATAGCTCAGAGCTGTCTGGCCCAGGGCCTCTCCACCATGCTGGCCAACCTCTTCTCCATGAGGTCCTTCATCGAGATTGAAGAGGACACATGGCAGAAGTACTATTTAGAAGGGGTAGCTAATGAGATGTACACAGAGTATCTGTCCAGTGCCTTTGTGGGGCTCTCCTTCCCTGCAGTCTGCGAgctgtgCTACGTGAAGCTGAAGCTGTTGCTTATCGCCATCGAGAACAAGTCGGAGCTGGGTGAGAGCAGCATCCTCATCAACCCGGGGAACCACGTAAAGATGCAGGAAGGAACTCTGGGGTTCTTCATCGCCAGTGATGCCAAAGAAGTAAAGAGAGCATTTTTCTACTGCAAAGCTTGTCACGATGACATCACAGACCCCAAACGGATCAAAAAGTGTGGCTGCAAACGACTTGAAGACGAGCACCCGTCAACTCTGTCGCCCAAAAAAAAGCAGCGGAACGGAGGCATGCGAAACTCACCCAACAACTCCCCCAACATGATGAGGCATGACCCTCTACTAATCCCTGGGAACGAGCAGATGGAGAACATGGACATGAACTTGAAGCAGTATGACTCCACAGGAATGTTCCACTGGTGTCCGTCTAAAGAGATCGAGAAGGTCATCCTGaCCCGGAGTGAGGCATCCATGACGGTGTTGAGCGGCCATGTAGTGGTCTGTATATTTGGAGATGTCACGTCCGCTCTAGTGGGGCTGCGAAACTTGGTGATGCCTTTGAGAGCCAGCAACTTCCATTATCACGAGCTGAAACCCATAGTTTTTGTGGGCTCGCTGGAGTACCTGAGGAGAGAGTGGGAAACCCTACACAACTTCCCCAAGGTCTCCATACTACCTGGTACGCCATTAAGCCGTGCAGATTTAAGGGCTGTCAACATCAACCTCTGCGACATGTGCGTGATACTGTCGGCCAATCAGAACAATATCGACGACGCCTCGCTGCAGGATAAGGAATGCATTCTGGCGTCGCTCAACATAAAGTCTATGCAGTTTGACGACAGCATCGGGCTCTTGCAGGCTAACTCCCAAGGTTTCACGCCTCCTGGAATGGACCGGTCCTCTCCAGACAGCAGTCCAGTACATGGTTTAGCACGCCAGGCCTCCGTCACCACTGGCGCCAACATCCCCATCATCACTGAACTAGTGAACGACTCCAACGTTCAGTTCTTGGACCAAGATGATGACGACGACCCGGACACAGAGCTGTACCTGACGCAGCCCTTCGCCTGTGGAACCGCCTTCGCTGTCAGCGTGCTGGACTCTCTCATGAGTGCAACATACTTCAACGATAATATCCTCACCCTGATCCGGACGCTGGTGACTGGGGGAGCCACCCCAGAGCTAGAGGCTCTACTGGCTGAGGAGAACGCCCTGCAAGGGGGCTACAGCACGCCACAGACACTGGCCAACCGAGACAGGTGTCGTGTTGCCCAACTGGCCCTGTACGATGGGCCCTTTGCCGACTTGGGGGATGGTGGTTGCTATGGAGATTTGTTCTGTAAAGCATTGAAGACATACAACATGTTGTGCTTCGGAATCTACAGATTGAGAGACGCTCACCTTGCCACACCTAGCCAGTGTACCAAACGGTATGTGATCACCAACCCTCCGTATGAGTTTGAGTTGGTCCCCACAGACCTGATCTTCTGTCTGATGCAGTTTGACCACAATGCGGGCCAGTCTCGGACCAGCCTTTCCCACAGCTCCcactcctcccattcctccagcAAAAAGAGCTCGTCTGTCCACTCCATCCCCACCACCAACCGCCAGAACCGCAGCAGCAAGGCTCGGGAGGCTGGCCACAAACAGAAAAAGGAAATGGTTTACAGATGAACCAGAAAATGCCTACCCACGGAACATTCAGATCAAGCCCATGAGCACTCACATGGCCAACCAAGTCAACCAATACAAATCCACTAGCAGTCTGATACCACCAATCAGAGAAGTTGAAGATGAATGCTGAAAACCAGGCCCGCTTGATGACTCGTGAGAATTCTGGACGCTCTTATGAAAGGAGATAAGAGATGGCGAACAGGGATAATGATGATTAATTGGTCCCCACTCATTCTACAGATCAAGAGTTTGACATAAACACCACAACTGGAAGGGGCCTCCTATGTGTATACCTGCAATGTTACTTCCATGCTCTTCATGTTTCATTTATCAATCTTCCATAGAGATGTACATAATGACAATCTAATGAGGATTGTACACCCCCTCCCCCTTAGCACTTTTTGAAATGATTTGAAGAGTTGAAGAGAGAAGATTAAGTACTTCCTGTAATTATTTGCAATCGTTCATCACCTCTTCGTGTGACCAGACTCCATGGCTACTGTATTTTGAGGTTACTACTTGTTGTTGGAGGATGAGGGTCACGGCAGTTCGCTCATCGTTCACCACATCTCCCAAAAACGCCATTGGGGCTGACCACTCATACACCGTGTCTGTTTCTGTTCTATTTGCACTAAAACTGATCACGCTATTTTGCAACACGACGACGGGAAACATTGACATCTCCCCAAAACAACACCCATCACAGAAATGTGAACTTTTTGGTTGTCGATTCACTTTGTCATTTGAAGAGGTGTACAGATCCATTACATCACTGCTTAGGGTATGCTACTGTATGTCAACATGCTGTTGAGTAATCATCTGAATGAATGCATTcgagtcctgtagatcatattgTAAATCAGTTGTCTTGAGACTCAGAGTACTGTAAGAGATAGTTATGGGATAAGCTGGTTGACCGTATATAGCTACACTGTACCTACATCTGTTCTGGGGATATCACAATGGCTATGGATCATAATGATGTCTTTGACCGTGTTTCAAGCTCCTATCATCGCATGGTGCCTGAGCCCTTTTATAACAATACAGCGCAGATGATCAACTTAACCTgaaaacatgaaaacatgaaaGGGGACGAAGGACAACCTTGTCCTATCCCTTATGTGTAAACATGAAACGGGACAAAAGACAACCTTGTCCTATCCCTTATGTGTAAACATGAAAGTGGACGAAGGACAACCTTGTTCTATCCCTTATGTGTAAACATGAAAGGGGACGAAGGACAACCTTGTCCTATCCCTTATGTGTAAACATGAAAGGGGACGAAGGACAACTTTGTCCTATCCCTTATGTGTAAACATGAAAGAGGTGAATGGACAACTTTGTCTCGTCCCTTGTGAACACGTTAATTGAGTGAAAGGACAGCCTTGTACACATCTTGCATATGGCATGTGTATACTGTACGTGGCAGCAATGTGTCCCCTCAACAAAAACATTGGTGGAACATctgagttagtgttagtgttgtcatctctccatcagtgtgtatgtgatggTGGTTCAGCCTCTGAGGGAGCAGCATGTGGGATCAAGGCTTCAAACATGAATAACGAATATGAACTAGCTCTGTCTGGGGGTTGCCAATCAACTAATGAACTAAGCAAACACTTTTCTATGCTCACCATCATGCCCAGTCACATCACCAATAATACACCATCTATGATTGAGCTGAATAAATGTGAACAAACATTAGCTGTGTGCCCTAAAAATGTAAGGGAAGCATTTAAGCCGAAACCTATTTAATAACAAAAGAATAAGCATATCATTTCAATATTTTTTTGTCTGTTGAGAAATTTGGAGAAACAATGCCACATATTGCGTAAAATGGGCATCAGTGGGTCCTCCTTTGACCAGCGCCACCACTGCCTGGCACAGGGTTGGTAACAGAGGCAGCAAAGAGCTTGGATGTTCTCCGCTGCCAATCCTGATGTCATCATGACACCTCTAAACACTGTTGGTAAACATTAAGGGAAAAGCTCAATCATAGTTTTGCCACTGATGACGATGAAGAACGCTGGAGAAAACTTGCTTGTGTTCTTCATGTTATTCTGGTCAAGGCACAAGACAGTCCGTGTTAAAAATGGACCGTTTCTATTTTGTTTTTGATCCAGAGCAACCCAGACAGAGCTGCAGCCTTGGGGAGGAGAGGGTATGGTGCCACAGATGAACCAACTCAATTCTTAACCTAGATACTTTATACATACAAATATGATTATTTTATATTCATCTGAGCATAATCATGTTGTACTTATTTTTACACATGACGTAGTGAGAAACACTTTGTGAAAGCaatccattattattattaggcctATAATTACATCAGATTATTTTATTTCTAAATTAATCACTGTATTTAACATAATCCTACCAAAATTATTCATATCAATTCTGAAATGCTTATAATTAGAAATGCATCATTGAGGAAGAGTAGAAGTCCCCTCTCTTATCTCTGATAAAGTATAGTGATTAAGGGCGCTATTCAATCCATATCGCAGAAGTTCAACATTACAGtttgattgaaatttaaaggcaatgtttagcagagactgcattcacgataaacgctgcatatgtccagtggtggaacaagtacttattgtcatacttgagtgaaattatagataccttaatagaaaattactcaagtaaaagtgagtcacccagtgaaatactactttagtaaaagtctaaaagtatttggttttaaatatatatatttgaaagtataaatcatttcaaattccttatattaagcaaaccaggcaccattttcttgttttttatttatttatggaaaGCCAGTGACACACTCCAACGCTCAggcatcatttacaaactaagtatgtaggtgtttgtgtttagtgagtccgccaaatCAGAGGcaagaccagggatgttatcttgataagaGTGTGAATTGTCAAAAATATTAATAGTAAAATACAGAtatcccaaaaaactacttaagtagtacttcaaagtatttgtccttaagtactttacaccactgcatatgtcggctcaatcggaaattacatttacatttctaTCGcacaatctgtaacgcttcagtgATACAGATTGACTAGAGTCCTAAGTCAATATTGTATAACAGATAACATAAATCTAATGAGAGTCTTAAGTCAATATTGTAGAAGAGATAACATAAATCCAATGAGAGCCCTAAGTCAATATTGTAGAAAATATATCATAAATCTTGAGAGCCCTAAGTCAATATTGTATAGGAGATAACATAAATCTAATGAGAGCCCTAAGTCAATATTGTATAGGAGATAACATAAATCTAATGAGAGCCCTAAGTCAATATTGTATAGGAGATAACATAAATTTAATGAGAGCCCTAAGTTAATATTGTATAGGAGATAACATAAATCTAACTCTGAGCTTCTGTATCAACTGTTGAGTGCTCCTCAAAACGTAAATGGGCTTAGTTGAAGGATCTCTGTAGCTGTATTGATAAACTTTATTGTACTGCTCATTTTCATCTGTAAGCAAATacaaatgttgttgtctgagacaAACATAAATGTGACGTAAACAATCACTGGGTGTAAATAATACCCAGACAGTGAGCCAATCGGAAAGGTGCATGAAGCCCCGATCTGGGGCATTTAGGCATTCGTTCTGTTCTGAGAGTAAAACTGGGTGACCTCTACTATCAATGATTGACCTAAATTAGGTCTCTTAGTAAGGAGAGATACATTGAAGTATTGTTTTGTGGGTGTATAATGTCATTCTTCATGAATGTGCGTTTCTAACTATGTGACAGATTGTTAGAACATCATCAGGTTGTTTGCATTGAACAGATAGCCATGATATTATAGACTAAGATAATGTCTTTCTAAAGACCTGTCATTCTTGACAAAAAAAGGACATATATTTGTGTCTCAATATGTTGTGTATATTCAGCCATTATATAGATTTTTCTGAAGCAAAATGTCCTGAGCTTTCTGTCTGTCTATTGGGTGTGGTGCGACTGCTCATAAACATTTTGTCCTGACGTGAACTTCTGAAGCTTTTGTGCTTACATTGTTGTCACACTTTGTAGCAAGTATAATTATTTTCAGAAAGTATGTGAGTACAAATGTGTATATAATTGGGTTGTTAATAATATACTCGCTAGACTGAAAAACAAGGAATTAATATTTGACAATGACTTGACTTGACACATACTATTGACGAAGGACAAACTTATTGTTTTGTCATAAATGGAAAAAAATGTAAACTTGACTTGAGCAGGTTTAACAGGACCTGGTTATATGAACCATCACAGAGGTGCAGACATAAGCTGGTACCAGTTCAGCAAAGCTTATCACAGTACAGAGAGAACATACTTCATTTGTTTTCTTGTTGAAATAGTTTCTTTATCAGGGTTTACATTCCATTTTGTCAGCTCTCGTCATTTATGTCACCATAGTAATATCCATGGATTGTTTGAAACtaatttgtattatttgtttacagatttattttttattcagagGCACTTAAATAATTATCACTGTACTCAGAAATCAAATGGTACAAATCACAACCCAAACAGATGCATACTTACAGAATAGTCTACCAGTGCATTTCATTATAtctgaatgtttttttattttcaatacttGTACCCACAATTTGTGTGACTGTTTTGACTCAAACTGGAAAAGACACTGGATTGAAACCTGTTCTTACATTAAGCTTGATCTCTTTTTGGCACAAATACTCCACAAATCTATGGTACTGCTGTATACCATATAATATGTTTGTACACGTCTTTGCAATGTACGCCTCTAAAGTTAGTGTTTTGTGCCATGGAAAGTGTTGTTGAACAAGCATCATTCAGTCATTCACTGACTCACTAACTCAGAATGAGTAGGGATTGAGTTAGTTCTTCTTAGAAAGGGAAgtaaatgtgtatgtgtatgtgatttATACTGGCGTGGAGAACATCCAAGCCATCAATGCCCCCATGCCAGTATAGTGCCAGGCAGTGCTGTAGGTCAAGAGGAGGGCCCATTTCAAGACCCACTATAGCGAAAAGTGGCATTGAAAAGGAAGGAACATGGAGCTCATCAAAGTATCATACATCTGTGTTGGTCGTACTGTCTGTAGCTGAAGGTACCTATCTTGTTGTTAGGAGACTGCAGGGAGAGATGTTAAAACATGTTTGTTGTGTGGTAGAAGGTCTGAATGACTGAAGGATGCACAGAGAGCACAGGCCAGTTTCATGTGGCTCTGGAGTGTTTTAGTCCGCTTAAGATAGTCAGGACTATGAAACgtcacacatcactgttacagtaTGTGACATATTTTTGTTTATCTATTTTGTTACTGTAAAGGACGGATAAAATAACTTATTTGCTGGAAAATGTACTAGATGTAATAAAATGTATACAACTATGGGGGGATTTAAGTCTTAACAACACATTGAAATTGCAGGTGGCAATCTTTGTTGATTTTTTTAGGAAAAAAATAAACTTGCAGTATTTTGTGGGGTGGGCTGCCTATCAGTTCGGGTGGAATTCAGGACATTGCTCTCACACGTCACATATCTGATTCTTTGGCACATGGTCTACTTAGTTTGGATGGATACATGGAGGATTTGATGGTGCTGGGTAGATCTACCTGACTCTGTCAAACATAATCCGCTGATAAATATACTGTCTTGTACAAAAAGTTTGTACATAAATTGTACATGGTTTCTTTTTGTATTTTCTCAAATTAAAATGGATGTATTTGTGTTCTAAAACTGGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU103342 lncRNA downstream 81040 82865695 ~ 82868569 (-) True G93836
TU103328 lncRNA downstream 119481 82829279 ~ 82830128 (-) True G93823
TU103265 lncRNA downstream 238230 82711054 ~ 82711379 (-) True G93761
TU103213 lncRNA downstream 255161 82631640 ~ 82694448 (-) True G93710
TU103693 lncRNA upstream 3852 83271009 ~ 83271227 (-) True G94074
TU103673 lncRNA upstream 5375 83272532 ~ 83274421 (-) False LOC110530648
TU103694 lncRNA upstream 9825 83276982 ~ 83277201 (-) True G94075
TU103695 lncRNA upstream 10079 83277236 ~ 83277453 (-) True G94076
TU103696 lncRNA upstream 10532 83277689 ~ 83278049 (-) True G94077
XM_021613833.2 mRNA downstream 507284 82439142 ~ 82442325 (-) True LOC110530617
LOC110532782 mRNA downstream 647742 82291792 ~ 82301867 (-) False LOC110532782
XM_036989948.1 mRNA downstream 661062 82275069 ~ 82288547 (-) True LOC110530601
XM_036989946.1 mRNA downstream 683591 82258046 ~ 82266018 (-) True LOC110532773
XM_036989935.1 mRNA downstream 703977 82232580 ~ 82245632 (-) True LOC118966722
XM_036986952.1 mRNA upstream 5372 83272529 ~ 83374623 (-) False LOC110530648
XM_036986957.1 mRNA upstream 5372 83272529 ~ 83374623 (-) False LOC110530648
XM_036986964.1 mRNA upstream 5372 83272529 ~ 83374623 (-) False LOC110530648
XM_036986961.1 mRNA upstream 7683 83274840 ~ 83374623 (-) False LOC110530648
XM_021613988.2 mRNA upstream 119840 83386997 ~ 83409085 (-) False LOC110530724
TU102047 other downstream 647762 82295312 ~ 82301847 (-) True LOC110532782
TU102078 other downstream 655306 82293813 ~ 82294303 (-) False LOC110532782
TU101970 other downstream 787866 82160407 ~ 82161743 (-) False G92566
TU101980 other downstream 787866 82160407 ~ 82161743 (-) True G92566
TU101510 other downstream 1332285 81607478 ~ 81617324 (-) True LOC110530475
TU103830 other upstream 216899 83484056 ~ 83485937 (-) True G94201
TU104323 other upstream 534175 83801332 ~ 83802471 (-) True G94613
TU104308 other upstream 891666 84158823 ~ 84160764 (-) False LOC110531033
TU104309 other upstream 891666 84158823 ~ 84160764 (-) True LOC110531033
TU104557 other upstream 936330 84203487 ~ 84204464 (-) True G94821

Expression Profile