RNA id: TU103475


Basic Information

Item Value
RNA id TU103475
length 6158
RNA type TUCP
GC content 0.38
exon number 4
gene id LOC100301648
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 82949609 ~ 83267163 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAAGGTCTCTTTCCCCAAAACATACAGCAGGATGTATCCAGGGCACTGCagtttgacatttaaaaaaacttGCATTATTTTGTAATTTAGACAAATGATTGCACTTTATAAGCCAACACACCCTGATGTTGTTTTTGATTTGCCGTTTGTTGTTTTCCAGGATGGTGGTTGCTATGGAGATTTGTTCTGTAAAGCATTGAAGACATACAACATGTTGTGCTTCGGAATCTACAGATTGAGAGACGCTCACCTTGCCACACCTAGCCAGTGTACCAAACGGTATGTGATCACCAACCCTCCGTATGAGTTTGAGTTGGTCCCCACAGACCTGATCTTCTGTCTGATGCAGTTTGACCACAATGCGGGCCAGTCTCGGACCAGCCTTTCCCACAGCTCCcactcctcccattcctccagcAAAAAGAGCTCGTCTGTCCACTCCATCCCCACCACCAACCGCCAGAACCGCAGCAGCAAGGCTCGGGAGGCTGGCCACAAACAGAAAAAGGAAATGGTTTACAGATGAACCAGAAAATGCCTACCCACGGAACATTCAGATCAAGCCCATGAGCACTCACATGGCCAACCAAGTCAACCAATACAAATCCACTAGCAGTCTGATACCACCAATCAGAGAAGTTGAAGATGAATGCTGAAAACCAGGCCCGCTTGATGACTCGTGAGAATTCTGGACGCTCTTATGAAAGGAGATAAGAGATGGCGAACAGGGATAATGATGATTAATTGGTCCCCACTCATTCTACAGATCAAGAGTTTGACATAAACACCACAACTGGAAGGGGCCTCCTATGTGTATACCTGCAATGTTACTTCCATGCTCTTCATGTTTCATTTATCAATCTTCCATAGAGATGTACATAATGACAATCTAATGAGGATTGTACACCCCCTCCCCCTTAGCACTTTTTGAAATGATTTGAAGAGTTGAAGAGAGAAGATTAAGTACTTCCTGTAATTATTTGCAATCGTTCATCACCTCTTCGTGTGACCAGACTCCATGGCTACTGTATTTTGAGGTTACTACTTGTTGTTGGAGGATGAGGGTCACGGCAGTTCGCTCATCGTTCACCACATCTCCCAAAAACGCCATTGGGGCTGACCACTCATACACCGTGTCTGTTTCTGTTCTATTTGCACTAAAACTGATCACGCTATTTTGCAACACGACGACGGGAAACATTGACATCTCCCCAAAACAACACCCATCACAGAAATGTGAACTTTTTGGTTGTCGATTCACTTTGTCATTTGAAGAGGTGTACAGATCCATTACATCACTGCTTAGGGTATGCTACTGTATGTCAACATGCTGTTGAGTAATCATCTGAATGAATGCATTcgagtcctgtagatcatattgTAAATCAGTTGTCTTGAGACTCAGAGTACTGTAAGAGATAGTTATGGGATAAGCTGGTTGACCGTATATAGCTACACTGTACCTACATCTGTTCTGGGGATATCACAATGGCTATGGATCATAATGATGTCTTTGACCGTGTTTCAAGCTCCTATCATCGCATGGTGCCTGAGCCCTTTTATAACAATACAGCGCAGATGATCAACTTAACCTgaaaacatgaaaGGGGACGAAGGACAACCTTGTCCTATCCCTTATGTGTAAACATGAAAGGGGACGAAGGACAACTTTGTCCTATCCCTTATGTGTAAACATGAAAGAGGTGAATGGACAACTTTGTCTCGTCCCTTGTGAACACGTTAATTGAGTGAAAGGACAGCCTTGTACACATCTTGCATATGGCATGTGTATACTGTACGTGGCAGCAATGTGTCCCCTCAACAAAAACATTGGTGGAACATctgagttagtgttagtgttgtcatctctccatcagtgtgtatgtgatggTGGTTCAGCCTCTGAGGGAGCAGCATGTGGGATCAAGGCTTCAAACATGAATAACGAATATGAACTAGCTCTGTCTGGGGGTTGCCAATCAACTAATGAACTAAGCAAACACTTTTCTATGCTCACCATCATGCCCAGTCACATCACCAATAATACACCATCTATGATTGAGCTGAATAAATGTGAACAAACATTAGCTGTGTGCCCTAAAAATGTAAGGGAAGCATTTAAGCCGAAACCTATTTAATAACAAAAGAATAAGCATATCATTTCAATATTTTTTTGTCTGTTGAGAAATTTGGAGAAACAATGCCACATATTGCGTAAAATGGGCATCAGTGGGTCCTCCTTTGACCAGCGCCACCACTGCCTGGCACAGGGTTGGTAACAGAGGCAGCAAAGAGCTTGGATGTTCTCCGCTGCCAATCCTGATGTCATCATGACACCTCTAAACACTGTTGGTAAACATTAAGGGAAAAGCTCAATCATAGTTTTGCCACTGATGACGATGAAGAACGCTGGAGAAAACTTGCTTGTGTTCTTCATGTTATTCTGGTCAAGGCACAAGACAGTCCGTGTTAAAAATGGACCGTTTCTATTTTGTTTTTGATCCAGAGCAACCCAGACAGAGCTGCAGCCTTGGGGAGGAGAGGGTATGGTGCCACAGATGAACCAACTCAATTCTTAACCTAGATACTTTATACATACAAATATGATTATTTTATATTCATCTGAGCATAATCATGTTGTACTTATTTTTACACATGACGTAGTGAGAAACACTTTGTGAAAGCaatccattattattattaggcctATAATTACATCAGATTATTTTATTTCTAAATTAATCACTGTATTTAACATAATCCTACCAAAATTATTCATATCAATTCTGAAATGCTTATAATTAGAAATGCATCATTGAGGAAGAGTAGAAGTCCCCTCTCTTATCTCTGATAAAGTATAGTGATTAAGGGCGCTATTCAATCCATATCGCAGAAGTTCAACATTACAGtttgattgaaatttaaaggcaatgtttagcagagactgcattcacgataaacgctgcatatgtccagtggtggaacaagtacttattgtcatacttgagtgaaattatagataccttaatagaaaattactcaagtaaaagtgagtcacccagtgaaatactactttagtaaaagtctaaaagtatttggttttaaatatatatatttgaaagtataaatcatttcaaattccttatattaagcaaaccaggcaccattttcttgttttttatttatttatggaaaGCCAGTGACACACTCCAACGCTCAggcatcatttacaaactaagtatgtaggtgtttgtgtttagtgagtccgccaaatCAGAGGcaagaccagggatgttatcttgataagaGTGTGAATTGTCAAAAATATTAATAGTAAAATACAGAtatcccaaaaaactacttaagtagtacttcaaagtatttgtccttaagtactttacaccactgcatatgtcggctcaatcggaaattacatttacatttctaTCGcacaatctgtaacgcttcagtgATACAGATTGACTAGAGTCCTAAGTCAATATTGTATAACAGATAACATAAATCTAATGAGAGTCTTAAGTCAATATTGTAGAAGAGATAACATAAATCCAATGAGAGCCCTAAGTCAATATTGTAGAAAATATATCATAAATCTTGAGAGCCCTAAGTCAATATTGTATAGGAGATAACATAAATCTAATGAGAGCCCTAAGTCAATATTGTATAGGAGATAACATAAATCTAATGAGAGCCCTAAGTCAATATTGTATAGGAGATAACATAAATTTAATGAGAGCCCTAAGTTAATATTGTATAGGAGATAACATAAATCTAACTCTGAGCTTCTGTATCAACTGTTGAGTGCTCCTCAAAACGTAAATGGGCTTAGTTGAAGGATCTCTGTAGCTGTATTGATAAACTTTATTGTACTGCTCATTTTCATCTGTAAGCAAATacaaatgttgttgtctgagacaAACATAAATGTGACGTAAACAATCACTGGGTGTAAATAATACCCAGACAGTGAGCCAATCGGAAAGGTGCATGAAGCCCCGATCTGGGGCATTTAGGCATTCGTTCTGTTCTGAGAGTAAAACTGGGTGACCTCTACTATCAATGATTGACCTAAATTAGGTCTCTTAGTAAGGAGAGATACATTGAAGTATTGTTTTGTGGGTGTATAATGTCATTCTTCATGAATGTGCGTTTCTAACTATGTGACAGATTGTTAGAACATCATCAGGTTGTTTGCATTGAACAGATAGCCATGATATTATAGACTAAGATAATGTCTTTCTAAAGACCTGTCATTCTTGACAAAAAAAGGACATATATTTGTGTCTCAATATGTTGTGTATATTCAGCCATTATATAGATTTTTCTGAAGCAAAATGTCCTGAGCTTTCTGTCTGTCTATTGGGTGTGGTGCGACTGCTCATAAACATTTTGTCCTGACGTGAACTTCTGAAGCTTTTGTGCTTACATTGTTGTCACACTTTGTAGCAAGTATAATTATTTTCAGAAAGTATGTGAGTACAAATGTGTATATAATTGGGTTGTTAATAATATACTCGCTAGACTGAAAAACAAGGAATTAATATTTGACAATGACTTGACTTGACACATACTATTGACGAAGGACAAACTTATTGTTTTGTCATAAATGGAAAAAAATGTAAACTTGACTTGAGCAGGTTTAACAGGACCTGGTTATATGAACCATCACAGAGGTGCAGACATAAGCTGGTACCAGTTCAGCAAAGCTTATCACAGTACAGAGAGAACATACTTCATTTGTTTTCTTGTTGAAATAGTTTCTTTATCAGGGTTTACATTCCATTTTGTCAGCTCTCGTCATTTATGTCACCATAGTAATATCCATGGATTGTTTGAAACtaatttgtattatttgtttacagatttattttttattcagagGCACTTAAATAATTATCACTGTACTCAGAAATCAAATGGTACAAATCACAACCCAAACAGATGCATACTTACAGAATAGTCTACCAGTGCATTTCATTATAtctgaatgtttttttattttcaatacttGTACCCACAATTTGTGTGACTGTTTTGACTCAAACTGGAAAAGACACTGGATTGAAACCTGTTCTTACATTAAGCTTGATCTCTTTTTGGCACAAATACTCCACAAATCTATGGTACTGCTGTATACCATATAATATGTTTGTACACGTCTTTGCAATGTACGCCTCTAAAGTTAGTGTTTTGTGCCATGGAAAGTGTTGTTGAACAAGCATCATTCAGTCATTCACTGACTCACTAACTCAGAATGAGTAGGGATTGAGTTAGTTCTTCTTAGAAAGGGAAgtaaatgtgtatgtgtatgtgatttATACTGGCGTGGAGAACATCCAAGCCATCAATGCCCCCATGCCAGTATAGTGCCAGGCAGTGCTGTAGGTCAAGAGGAGGGCCCATTTCAAGACCCACTATAGCGAAAAGTGGCATTGAAAAGGAAGGAACATGGAGCTCATCAAAGTATCATACATCTGTGTTGGTCGTACTGTCTGTAGCTGAAGGTACCTATCTTGTTGTTAGGAGACTGCAGGGAGAGATGTTAAAACATGTTTGTTGTGTGGTAGAAGGTCTGAATGACTGAAGGATGCACAGAGAGCACAGGCCAGTTTCATGTGGCTCTGGAGTGTTTTAGTCCGCTTAAGATAGTCAGGACTATGAAACgtcacacatcactgttacagtaTGTGACATATTTTTGTTTATCTATTTTGTTACTGTAAAGGACGGATAAAATAACTTATTTGCTGGAAAATGTACTAGATGTAATAAAATGTATACAACTATGGGGGGATTTAAGTCTTAACAACACATTGAAATTGCAGGTGGCAATCTTTGTTGATTTTTTTAGGAAAAAAATAAACTTGCAGTATTTTGTGGGGTGGGCTGCCTATCAGTTCGGGTGGAATTCAGGACATTGCTCTCACACGTCACATATCTGATTCTTTGGCACATGGTCTACTTAGTTTGGATGGATACATGGAGGATTTGATGGTGCTGGGTAGATCTACCTGACTCTGTCAAACATAATCCGCTGATAAATATACTGTCTTGTACAAAAAGTTTGTACATAAATTGTACATGGTTTCTTTTTGTATTTTCTCAAATTAAAATGGATGTATTTGTGTTCTAAAACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU103342 lncRNA downstream 81045 82865695 ~ 82868569 (-) True G93836
TU103328 lncRNA downstream 119486 82829279 ~ 82830128 (-) True G93823
TU103265 lncRNA downstream 238235 82711054 ~ 82711379 (-) True G93761
TU103213 lncRNA downstream 255166 82631640 ~ 82694448 (-) True G93710
TU103508 lncRNA upstream 38181 82999503 ~ 83001499 (-) False G93904
TU103510 lncRNA upstream 38181 82999503 ~ 83001499 (-) True G93904
TU103533 lncRNA upstream 93384 83054706 ~ 83058742 (-) True G93926
TU103550 lncRNA upstream 117515 83078837 ~ 83079268 (-) True G93943
TU103618 lncRNA upstream 198248 83159570 ~ 83162155 (-) True G94001
XM_021613833.2 mRNA downstream 507289 82439142 ~ 82442325 (-) True LOC110530617
LOC110532782 mRNA downstream 647747 82291792 ~ 82301867 (-) False LOC110532782
XM_036989948.1 mRNA downstream 661067 82275069 ~ 82288547 (-) True LOC110530601
XM_036989946.1 mRNA downstream 683596 82258046 ~ 82266018 (-) True LOC110532773
XM_036989935.1 mRNA downstream 703982 82232580 ~ 82245632 (-) True LOC118966722
XM_036986952.1 mRNA upstream 311207 83272529 ~ 83374623 (-) False LOC110530648
XM_036986957.1 mRNA upstream 311207 83272529 ~ 83374623 (-) False LOC110530648
XM_036986964.1 mRNA upstream 311207 83272529 ~ 83374623 (-) False LOC110530648
XM_036986961.1 mRNA upstream 313518 83274840 ~ 83374623 (-) False LOC110530648
XM_021613988.2 mRNA upstream 425675 83386997 ~ 83409085 (-) False LOC110530724
TU102047 other downstream 647767 82295312 ~ 82301847 (-) True LOC110532782
TU102078 other downstream 655311 82293813 ~ 82294303 (-) False LOC110532782
TU101970 other downstream 787871 82160407 ~ 82161743 (-) False G92566
TU101980 other downstream 787871 82160407 ~ 82161743 (-) True G92566
TU101510 other downstream 1332290 81607478 ~ 81617324 (-) True LOC110530475
TU103830 other upstream 522734 83484056 ~ 83485937 (-) True G94201
TU104323 other upstream 840010 83801332 ~ 83802471 (-) True G94613
TU104308 other upstream 1197501 84158823 ~ 84160764 (-) False LOC110531033
TU104309 other upstream 1197501 84158823 ~ 84160764 (-) True LOC110531033
TU104557 other upstream 1242165 84203487 ~ 84204464 (-) True G94821

Expression Profile