RNA id: XM_036986952.1


Basic Information

Item Value
RNA id XM_036986952.1
length 8998
RNA type mRNA
GC content 0.51
exon number 35
gene id LOC110530648
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 83272529 ~ 83374623 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACATGGCATTGTATGGGAATTTGATTGACAGCACGCAGCAGCTGCTGAACAGCCCAGACATTGCGCAGGATACAGTATAGCTGGGGAACGGCGAGAGAGTTACGGTAGTTTTCCTAGCACTTGAGTTGGTTTAGTGCATGAAATAAATGACTCTTTGGAAAAAGCTCATGTGTTAGGGCAGGGTTTTTGTCGGAATAACGCAAAAATGGATGAAGTTGCCAAACGTAAGTAACCTGGGAAAATGTATGGCTGTTTAGTGCAGTCAACAGTAGGCAACAAATATGGCTTCGGGTGCCTTTTCCTATTTGTTATAAAAAATTACTGTCCCATGCCATTCGATGTCATGGCTCTTCTGCTGAATTCATACAAGTGACAATTAGGAAGTTAGTTCCTTGTTCGCTTATCGGGCAGGGGGGGTCATTTTGGAGAAATAAAGCCAAGGATACGTTAGCTAACCAgtctgctaacgttagctagttagctaccgaACTAAAGCGAACGGCAATGGAGCCAAAGCACAAAGAGTTGTTAGACCAATGCCACCAAAACTTGCTGGACTCAATAACTGACGCTGACCGGCTGATAGAGTTGCTCATACTCTCCGGTACTATAAGCCAGCTCGACCGCTTCGAACTGGACCAAAACTGCTCTTCCAGCGCGGAGAAAGTGGACCAGCTTTTGAAGATGCTTGTGAACAAGGAAAGCGACCATTTCCTCGAACTGTGTGTGGCCTTGGAGAAGACGTACCCTGAGCTGTATTCTGCACTCTTTACTAACGGCGGTGGACCCGTTGACCATTCGTCTGGCTCTACATACAGTGTTCTCTCCACCATGCCCTCAGACTCTGAGAGTAGCAGCTCCCTAAGCAGTGTCGGTTCACCCCCTGGTACCGGTAACGGCTCAGCCTCGTCTCCGCCCCCAGCCCTCAACGACAACCGGCCTGCTGGTGACAACCTGGACACCATCCTGTTCCAGCTGCGCCAGGTGACCCGTGAGAGGGACGAGCTCCGCAAGCGCCTGGCCCTGGCATCACCCGGCACCACCTTCGACGACTGCAGGCCAAATTTCAAAGCCAGCCATGATTACGAGCGTCTGAAAAACCAGTGTATGAGGGCCATGGCAGATCTCCAGACTCTACAGAACCAACACACCAAGACTCTGAAGAGATGTGAGGAGGCCGTCAAGGAGGCTGACTTCTACCATATGCTCCACAGCCGTGTGTTAGGAGACCAGTCTCAGCTGAAGGAGGAGCTGGAGGTGTTGAGGAGAGACCACGCTCAGCTGGTCAGGGAACACAACCACCTGAAGCAGAGCTGTGAGGAGCTCCGCAGGATGCACAGTGACGACCAGAAGGAGGTGGCTGACATGAGGCTGCAGCAGCAAGAGGTGATGAGAGAGAACGGTTCCTCAGAGGTTCTCAACAAACTGTACGACACAGCCATGGACAAGCTGGAGGGGGTGAGGAAGGAATACGATTCGCTGAGCAAACGCTACGGTGAGAAAGTTGCCAATCACAACACGGACCTGAGCAGGTTGGAGCAGGCGGAGGAAGAGAACCGACGACTACAGAAACAGATGGACACGTTGCTGAAACAACGAGACAAGGCCATACACTACCAACAACATTGCTCTACGTCCATGAGGAGgtTTGACTCTGTACAACAGGAGCTGGACAAGTCTTCAGCCCAGAACAAGGTGCTGCAGCGGGAGATGGAGCGGCTGCAGTCGGAGGTGATGCGCTGTAAGAACTTCCAGCTGAAGGCAGTAAAGGACTGTGAGAAGTTCAAGGAGGAGAGAGACTCTGTGTTCAACGAGTACAGGCTCATCATGAGTGAGAGGGACCAGGTGATCAAGGAGCTGGAAAAGCTGCAGATGGCGCTGGAGGCTGCAGAGGCCCGCCTCAAAAACACCTCTTCTGAAAGGATGGTGGCCAGCGAGGAGACGGAGGCTCTCAGACAGGAGCTGAACTCATCGTTGGTGGACCGGGACAGAGTAATCTGTGAGAGGAATGAGCTGTTGGAGAAGTACTGCCACGAGGTGAAGGACAAGGCTGAGGCCCAGAAGGAGTTGAGCCAGGCCTGTAAAGACATTGAGACGGTCCGGGAGGAGAGAGACGTGGCCCgcaaggagaggacagaggctaTCATACAGAAAGAACAGCTACTGAGAGAATACTACCAGGctagacagaaacAAGATTCTGCCACCCTGGACATAGAGCGTGTCAACAAGGAGATGGAGGTGTTGAGGAAGCAGTATGAGGCCATGTCCCAGGAGCTAAAAGAGGCCACGCAGGAGGCTGAGGTGGCCAAGTGTCGACGTGACTGGGCCTTCCAGGAGAGAGACAAaatagtggcagagagagagagcatacgGACGCTGTGTGATAACCTGCGTAGGGAGAGGGACCGGGCAGTCAGCGATCTGGCCGACGCCCTGCGTAACCTTGACGACATGAGGAAGCAGAAGAACGACTCGTCACGGGAACTGAAAGAATTCAAagagaagatggagagccAGCTGGACAAGGAGGCAAGGTTCTGTCAGCTGATGGCACACAGCTCCCATGACTCGGCTATCGACACAGACTCTCTGGAGTGGGAGACTGAGGTGGTGGAGTTTGAGAAGGACAGGGATGACATGGATTTGAAGGCACTTGGGTTTGACATAGCAGAAGGGGTAAATGATCCGTATTTACCAGGAGATTGTGGAATATTTGTAACAAGAGTTGACAGAGGAAGTATTGCAGATGGAAGGTTAAGAGTGAACGATTGGCTGTTGAAGTTAAATGATGTGAATTTGACCAATAAGGACAGGAAGCAGGTGGTGAACGCGGTGCTTAATGGAGGCGGACTGATCAACATGGTGGTGCGCAGGAGGAAGTCTCTGGGAGGGAGGCTGGTCACCCCCATACACATCAACCTAATCGGACACAAAGACAGCGGTATAGGTCTGGAGAGTGGCGTGTTTGTGACGGCCCTGGTCCAGGGGAGTCCTGCTGCCAGGGAGGGATCTCTGACAGTCGGAGACAGACTTATCGCTATCAACGGCATCGCTCTGGACAACAAGTCGGTGACGGAGTGCGAGACTCTGCTTAGGAACTGTAGGGACTCTCTAAGCCTCTCTCTCATGAAGTTCTTTCCTCACAGTTCGTCGGGCCAGAGCATCTTCGAGAGCCTGCGGGAGTCATCGTCCAACGGCCGTCTCTCCGAGGTACTCTCCAGGAACAGCCTCAAACACAACAGCTCCACGCAGACAGACATCTTCTGCCCCGACACAGGAGGGGGGGGTAGTAACGTCAACAtccctggagagaggaggaagggtggGGCAGGTGAACCTGAGGAGGGGATGGGGGTGTACGGGGACATCAGGAAGCCCTTTTCCATGGTGTCTCTCCACTCAACCAGCCTTCGGCCGTCCTCTGACCTCGGTCTGGGTTCCCCGGGCCGCTACGGCCCCAGCGCCTTCCAGGAGTGCTGCTCTGGGTCCCCCTACGCCAATGCACCCCCACCCCCCATCACCTATGACCCCTCTAAACCTGCCGACTGCATCACCATGGAGACCACCCTGGAGAGGAAGCAAAGTGGTGGCACCTGGCCCAAGGTGATCGTAGGTGGGATGTCCGTCGCCGTGGATACGACCACAGCGATGACTCCGACCCAACTGTCCATCTTCAAGTCGCCCAAACAGAGGAAGTCTATCTTCAACCCGGATGCCTTCAAACCACGGTCTGAGACGGCGCCACAGTCTTCCAAGATGGAGTTCCTGTCGTCCAGTCAGCTGGTGGCCCACTCCCCGCAGCCCTCCAAGAGggagtctctctcctcctcctctacggCCACACCCACACCTCCGACTCCGCCCACCCGCAACGATTCGTTCAAATTCAAACACAAACAGCAGAGCAGCTCTGCTTCCGACTGCACGCTTACCTCCGACGGGGGCAAAGGGGAGGCTGTTGCCATGGTTATGGGGGAGAGCAGTGGGGAACGAGAGAGGGACAGGAACGGGAACCACTACTTCCTGGATGGGAAGGTCCTGACGCAGAGGAAGTCATGTGACGAGGACATTGGTCGAACCCGGGGTGAGGAGCCTGAGGTAAAGAGGCCCCGCCCTAAATCTGCCCCAGCGCTCAGACGTAGGATGACCCCCCAGTCCATCCCCCTGCCCGCCTTCCAGAGCTACTCCAATGATGATCACTCTCCAGAGCCCAGAGAGATGCTTCGCTCCTCCCCCAACCGCTTCCACAGACAGAGTGTGGGCTTCGGCTCCACAGTCTACAACGGTACCTTGTCTGCAAaTTCGGCCCATCGTGGCCTTGCCCCGTGTCCAGCAGTGACTGCTGTGATGAGGAACCCAGTATACACAGTCCGCAGCCACAGAGTCCACACCAacaactgtccctctgtctcctcccagATCTGCCAACACCAGCACAACAACCAACACCACAGtccgcAGCACCAGGGTCGTCTGAGCCTGGACCTGAGCCAGAAGCGTCCAGCAGCAGACTACTCATCGTCCTCGTCACGCAGCAGCAGCACCTCCCATGGTACCAACTCGCTACCCTCCAGCGCTCGCCTGGGccttgGTTGGTCCAGTAACGTCCAGTACCGGACAGAGAGGATAAAGATCCCCTCCACTCCCCGCTACCCACGGTCCATGCTGGGCTCTGACAGAGGCTCCCTGTCCCATTCAGAGTGCAGCAGCCCCAGCCTCATCACTCCACCCCACTCACCTCTCAACCTGGAGACTTCCTCCTTCGCTAGCAGCCAATCACAGAGCTCTATCTCCACCCTGCCCAGATTCTCCGTCAGCCCTGTGCCAATAGGAGAGCGGAGGAAAGACCGGTCTCTGTACCGTAACAGGTCTTTTCTGAGGATCCCTCTGGCTGCTAGGCCGAGGTTCTCCTCTCTCAGGAGCCTCAGgCCGTACCTGGAGGAACCTCGGAACGTGATCGTTCACAAAGGGGCGGAGCCTCTGGGCATCTCTATCGTCGGTGGCGAGAACGGCGGCATCTTCGTCTCCAAGGTGACGGGAGGCAGCATCGCCCACCAGGCCGGCCTGGAGTACGGTGACCAACTCCTCGAGTATAACGGTATTAACCTGCGTAATGCCACAGAGCAGCAGGCCAGGCTGATCATTGGTCAGCAGTGTGACACCATCACCATTATGGCTCAATACAACCCCCACATGTACCAGCTGGGAAACCCCTCACGTTCCAGTTCTGGTCTGGAGCCGGTGAGCAGCCAGTTCACGCCCCAGGGCAGTGGAGCCACCACCCCAGACAACCACTCTACTATAGACACTCTGAGTGAACAGGACGAAGGAACACTCACCCCCTCCTCCAAACAGACCACCCCTACAACTAGTCCTCACAGCTTcatcagGGTGTCGTCAGAGGGCAGTTGTAAGGTGTGTGAGCCGCGGGTGGTGACGGTGCTCAGGGCCCAGGGTgcagagctggggctggggctgtgtGGAGGGAACCTCCGGGGGGTCTATGTAAAGAGTCTGGAGGAGGACAGCCCTGCTAGGGGACCAGAGGGCCTGCAGCCTGGGGACCTCATACTGGAGTATGGGTCTGTGAATATGAAGAACAAAACGGTGGAGGAGATGTATGTAGAGATGCTGAAGCCGGCCGAGACAGTCACTCTCAGAGTCCAACAACGACCTGATGACTTCAACATGGTTAAAGACACACCGGGGGATGGCTTCTatatcagagCACTTTATGAGCGGACTGCGGAGGCAGAGCTGGACCTGAGTTTTCAGAAGGATGACATCCTGTATGTGGATGATACTCTACCAATGGGCAGCTTCGGCAGCTGGATGGTCTGGCAGCTGGATGAGAACGCACAGCGGATCCAGAGAGGACAGATCCCCAGCAAATACATGATGGACCAGGAGTTGTACCGACACAGTATGACAGAGCTGAAGGAAGACAAGGACAGTAAGAGTCTGTCTGCTGCCGCCAGGAGATCCTTCTTCAGGAGGAAGCACAAACACAAACGCAGCGGCTCTAAAGACGGCAAGGAACTGGTGGCCCAGGACGCCATTAGCACAGACTCCATACCATTTCTAGAGGACTGTGTGAGCCTGGCGTACCAGCGGGTCCAGAAGGTAGTGTGTGTTTCCTCTAGGCCGGTCGTGATCCTCGGCCCTCTCTCAGACCCCGTCAAGGACATGCTGGTTAAAGAGTCCCCCGGGAAGTTCTGCAGATGTGTCCTGGAGGTGATGAAGGCATCCCAGCAGGCTATAGAGCGCGGCGTCAAAGACTGCCTCTTCATTGACTACAAACGCAGGAGTGGCCATTTTGATGTGACCACCGTGGCCTCCATCAAGGAGATCACAGAGAAGGACTGCCACTGTCTGCTAGACATCGCCCCCCACGCCATTGAGAGGCTGCACAGCGTTCACATCTACCCTATCGTCATCTTCATCCGCTACAAAAACGCCAAGCAGATCAAGGAACAGAAGGATCCAGTGTATCTGCGAGACAAGGTCTCTCAAAAACATTCCAAGGAGCAGTTTGAGGTTGCACAGAAGATAGAGCAGGAGTATAGCACATTCTTTACAGGCATTGTCCAGGGCGGCTCTCTGCCCTACATTTGCACTCAGATCATAACTATAGTTGACCAGGAACAGAGTAAGGTCCTGTGGACTCCCCTTGGCTGTCCCTAGAGGGTGGAGGCCACCACTGCACCCTTCTCCCCTAGAGGGTGGAGGCCACCACTGCACCCTGTTGCACTgcgcctctccctctccactcacaacaaacactacaaaacctTCCACTCTATACCAAtaggtacactacagtacacttcaGTAAGCTACTACACATGTAAGCTAGATGTTATTGTTTTTAGGGTGTTGATTTGTACTTTTTAACCAGAGCCTTTTCTTCTCTGTGTAATCTGTAGCAGGTTGGTAGAACTGACAAGGTGTTACACTTCATTTGGTCTTCCCTAAGGGTTTTAAGGTGGTGTTTCTGTAAAGCTGCATTGTAAGCAGACTTTTACAGTTAAGACATGAGTGTGTATTGTTGTTAAATGTTCTGCTGGAATGTGTTAGACccccctgacccagaatcagccCTTAAATCAAACCTGTGTATCAAATGACATCACCCTGTTTTACACACCCCGTTCAATGACTGACAACTAATAATGTGGAATAATAATAACTGTGTGTGCGTATGAATCGTGTGtacgagagagagagtaatattaTTGATGAATTGTAATGACTTTGTTGGTTGGATTGAACCATGGTCTTTGATATTGGTATGAAGTTGACGCCATAGAAACGTTACCTGTAGAACAGACAAACCTCTCCAAACAATATGTCTTATTGGTCTTCTGTCAAATGTTTTATCCAAAAGGCCATTTTGAAAGGGTCAAATCAAACAATATTTTACAGCTTTCAATCACGTGTGTAACTGTGTCAAGTTAAATTGTGTGTCTATAGCAAAGCAAAAGCCATGAAAATCACACATGGCAGTAGCGAATGGTGTCTGGTCTACTCGTTGCGTTTCTATGGTTACTGCACGTGAGTGGACAGTTTACGGGCTTATCGGAAGTGCCTTCCGTCGGAGACAGGCCCCCATTCCTTACCCTTTCCGATCTGATGGAAAAGAATAAGTTGAAGCAATATGGCGATAGGACCTCCCCATTGGAAGGCTAGCTGGAGCCATCACCATGCTGTTCACACCCATCTGTTACCTTCAGATCTGCAAACACCATGAAGTTAACACATGGGTTGCAAAATTCCCTGTAGTTtcagaaatcccagttggaggATTCCTGGAATCGGGAGgtgaataagcaggaaatccgtaAACCAAGGATTTTATTGAAAGTTCACAGAATTTTTCAACCCAAGTTAACACTATAGGTCTGCAAACAAACACTATAGAGCAGggcttcccaaactcggtcctggggtcCCCCCAGAGCTTGTTTTGGAATGAGACCGTACAGAGCGTATGACAATGGCAAGGTTGTGAGGGTAGGCCAGATGGTGACCACCTCCAGAATACACTCCAGGGCTAGACAGACCACTGTGTCTCCATCACATATCTATCTGTCACATATTTAAAGACaatatagagaatatatatatatatatgtttgtgtgAGTGTACATGCCTCACAGGGGCCTATGGACTGTAACAGTATGCAGATGAATTATTCTATAGTACATGTATTTCAACTAGTTCTCAGGCCTGTGGAAGTTCAGTAGTCATGTCTTAGCAGGTATTTGCATGTTTTTCTGTTTTTGTCTTTGGTTGTCACCTTTTTTAAATGTACTCACAAACCAGAATGACACCATGGAGCAAATTCTATATTTTCTTATTCCTTAATAAAACCATTTAAATGTTAGTGATATATTTTTTCATTGTTATTTAATGTATTTTGATCTAAGTGGCAGAAACGCATTGTCCTGCATCCTAATGTGCCAAAATCCAGTACgtcagtttatttttttatttctgttTTGCACTTGTTATTCTGTGGACCTTAACAAAATGGTTCCTAGGTTTCCCAGTAGACATAAATAAATAGGTACTATATCATTTTTTATTAACTAATTCACATTTTAAATGTATCACATTAGTTCCATACATTTCATTGATGGCCTTTTTATTCTTTAATCATCTTGGTTAGAAAACAGACACACCAGAATGCTCCTCCATATTTGCATTCTTGCTGAAAAAGGGACTTAATGCACAGTTTTTCAAAGGAAAATCAGATCTGAAGTTTGACTATTGGGCTGTATGATAGGCATATTAAGTACAATTGGAATGTACCTTTTTTGTAGTAGGTAGAGATGGTTTAAAATGAGGGATTCCATGTGAAATGGTTGTATTTCTAAGAAGAATGACAAGCTGCCAGGTACTGTTCTGCGGTTTTATTTTAATTTTCTTTGAAAAATGTGATATGTTAAGACATGAACATTAGAATAAAAGTCATTTTCTCTATCGCAATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU103693 lncRNA downstream 1302 83271009 ~ 83271227 (-) True G94074
TU103648 lncRNA downstream 42017 83214581 ~ 83230512 (-) True G94029
TU103618 lncRNA downstream 110374 83159570 ~ 83162155 (-) True G94001
TU103550 lncRNA downstream 193261 83078837 ~ 83079268 (-) True G93943
TU103533 lncRNA downstream 213787 83054706 ~ 83058742 (-) True G93926
TU103753 lncRNA upstream 7312 83381935 ~ 83382181 (-) True G94130
TU103722 lncRNA upstream 12360 83386983 ~ 83391811 (-) True LOC110530724
TU103809 lncRNA upstream 79357 83453980 ~ 83480125 (-) True G94180
TU103835 lncRNA upstream 120373 83494996 ~ 83495230 (-) True G94206
TU103837 lncRNA upstream 121455 83496078 ~ 83496284 (-) True G94208
XM_036986908.1 mRNA downstream 5366 82955265 ~ 83267163 (-) False LOC100301648
XM_036986905.1 mRNA downstream 5367 82949609 ~ 83267162 (-) False LOC100301648
XM_036986915.1 mRNA downstream 5367 82955265 ~ 83267162 (-) False LOC100301648
XM_036986916.1 mRNA downstream 5367 82955265 ~ 83267162 (-) False LOC100301648
XM_036986904.1 mRNA downstream 5368 82949609 ~ 83267161 (-) False LOC100301648
XM_021613988.2 mRNA upstream 12374 83386997 ~ 83409085 (-) False LOC110530724
XM_021613980.2 mRNA upstream 12374 83386997 ~ 83409299 (-) False LOC110530724
XM_036987024.1 mRNA upstream 13815 83388438 ~ 83409300 (-) False LOC110530724
XM_036987115.1 mRNA upstream 301441 83676064 ~ 83701456 (-) True LOC110532793
XM_036987195.1 mRNA upstream 338729 83713352 ~ 83718497 (-) False LOC110530770
TU103453 other downstream 311207 82949614 ~ 82961322 (-) False LOC100301648
TU103475 other downstream 311207 82949614 ~ 82961322 (-) False LOC100301648
TU103482 other downstream 311207 82949614 ~ 82961322 (-) True LOC100301648
TU102047 other downstream 970682 82295312 ~ 82301847 (-) True LOC110532782
TU102078 other downstream 978226 82293813 ~ 82294303 (-) False LOC110532782
TU103830 other upstream 109433 83484056 ~ 83485937 (-) True G94201
TU104323 other upstream 426709 83801332 ~ 83802471 (-) True G94613
TU104308 other upstream 784200 84158823 ~ 84160764 (-) False LOC110531033
TU104309 other upstream 784200 84158823 ~ 84160764 (-) True LOC110531033
TU104557 other upstream 828864 84203487 ~ 84204464 (-) True G94821

Expression Profile