RNA id: TU103673


Basic Information

Item Value
RNA id TU103673
length 1890
lncRNA type sense_over
GC content 0.49
exon number 1
gene id LOC110530648
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 83272529 ~ 83374623 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAAATCAAACCTGTGTATCAAATGACATCACCCTGTTTTACACACCCCGTTCAATGACTGACAACTAATAATGTGGAATAATAATAACTGTGTGTGCGTATGAATCGTGTGtacgagagagagagtaatattaTTGATGAATTGTAATGACTTTGTTGGTTGGATTGAACCATGGTCTTTGATATTGGTATGAAGTTGACGCCATAGAAACGTTACCTGTAGAACAGACAAACCTCTCCAAACAATATGTCTTATTGGTCTTCTGTCAAATGTTTTATCCAAAAGGCCATTTTGAAAGGGTCAAATCAAACAATATTTTACAGCTTTCAATCACGTGTGTAACTGTGTCAAGTTAAATTGTGTGTCTATAGCAAAGCAAAAGCCATGAAAATCACACATGGCAGTAGCGAATGGTGTCTGGTCTACTCGTTGCGTTTCTATGGTTACTGCACGTGAGTGGACAGTTTACGGGCTTATCGGAAGTGCCTTCCGTCGGAGACAGGCCCCCATTCCTTACCCTTTCCGATCTGATGGAAAAGAATAAGTTGAAGCAATATGGCGATAGGACCTCCCCATTGGAAGGCTAGCTGGAGCCATCACCATGCTGTTCACACCCATCTGTTACCTTCAGATCTGCAAACACCATGAAGTTAACACATGGGTTGCAAAATTCCCTGTAGTTtcagaaatcccagttggaggATTCCTGGAATCGGGAGgtgaataagcaggaaatccgtaAACCAAGGATTTTATTGAAAGTTCACAGAATTTTTCAACCCAAGTTAACACTATAGGTCTGCAAACAAACACTATAGAGCAGggcttcccaaactcggtcctggggtcCCCCCAGAGCTTGTTTTGGAATGAGACCGTACAGAGCGTATGACAATGGCAAGGTTGTGAGGGTAGGCCAGATGGTGACCACCTCCAGAATACACTCCAGGGCTAGACAGACCACTGTGTCTCCATCACATATCTATCTGTCACATATTTAAAGACaatatagagaatatatatatatatatgtttgtgtgAGTGTACATGCCTCACAGGGGCCTATGGACTGTAACAGTATGCAGATGAATTATTCTATAGTACATGTATTTCAACTAGTTCTCAGGCCTGTGGAAGTTCAGTAGTCATGTCTTAGCAGGTATTTGCATGTTTTTCTGTTTTTGTCTTTGGTTGTCACCTTTTTTAAATGTACTCACAAACCAGAATGACACCATGGAGCAAATTCTATATTTTCTTATTCCTTAATAAAACCATTTAAATGTTAGTGATATATTTTTTCATTGTTATTTAATGTATTTTGATCTAAGTGGCAGAAACGCATTGTCCTGCATCCTAATGTGCCAAAATCCAGTACgtcagtttatttttttatttctgttTTGCACTTGTTATTCTGTGGACCTTAACAAAATGGTTCCTAGGTTTCCCAGTAGACATAAATAAATAGGTACTATATCATTTTTTATTAACTAATTCACATTTTAAATGTATCACATTAGTTCCATACATTTCATTGATGGCCTTTTTATTCTTTAATCATCTTGGTTAGAAAACAGACACACCAGAATGCTCCTCCATATTTGCATTCTTGCTGAAAAAGGGACTTAATGCACAGTTTTTCAAAGGAAAATCAGATCTGAAGTTTGACTATTGGGCTGTATGATAGGCATATTAAGTACAATTGGAATGTACCTTTTTTGTAGTAGGTAGAGATGGTTTAAAATGAGGGATTCCATGTGAAATGGTTGTATTTCTAAGAAGAATGACAAGCTGCCAGGTACTGTTCTGCGGTTTTATTTTAATTTTCTTTGAAAAATGTGATATGTTAAGACATGAACATTAGAATAAAAGTCATTTTCTCTATCGCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU103693 lncRNA downstream 1305 83271009 ~ 83271227 (-) True G94074
TU103648 lncRNA downstream 42020 83214581 ~ 83230512 (-) True G94029
TU103618 lncRNA downstream 110377 83159570 ~ 83162155 (-) True G94001
TU103550 lncRNA downstream 193264 83078837 ~ 83079268 (-) True G93943
TU103533 lncRNA downstream 213790 83054706 ~ 83058742 (-) True G93926
TU103694 lncRNA upstream 2561 83276982 ~ 83277201 (-) True G94075
TU103695 lncRNA upstream 2815 83277236 ~ 83277453 (-) True G94076
TU103696 lncRNA upstream 3268 83277689 ~ 83278049 (-) True G94077
TU103701 lncRNA upstream 12447 83286868 ~ 83287145 (-) True G94082
TU103702 lncRNA upstream 12915 83287336 ~ 83287569 (-) True G94083
XM_036986908.1 mRNA downstream 5369 82955265 ~ 83267163 (-) False LOC100301648
XM_036986915.1 mRNA downstream 5370 82955265 ~ 83267162 (-) False LOC100301648
XM_036986916.1 mRNA downstream 5370 82955265 ~ 83267162 (-) False LOC100301648
XM_036986924.1 mRNA downstream 5371 82955265 ~ 83267161 (-) False LOC100301648
XM_036986961.1 mRNA upstream 419 83274840 ~ 83374623 (-) False LOC110530648
XM_021613988.2 mRNA upstream 112576 83386997 ~ 83409085 (-) False LOC110530724
XM_021613980.2 mRNA upstream 112576 83386997 ~ 83409299 (-) False LOC110530724
XM_036987024.1 mRNA upstream 114017 83388438 ~ 83409300 (-) False LOC110530724
XM_036987115.1 mRNA upstream 401643 83676064 ~ 83701456 (-) True LOC110532793
TU103453 other downstream 311210 82949614 ~ 82961322 (-) False LOC100301648
TU103475 other downstream 311210 82949614 ~ 82961322 (-) False LOC100301648
TU103482 other downstream 311210 82949614 ~ 82961322 (-) True LOC100301648
TU102047 other downstream 970685 82295312 ~ 82301847 (-) True LOC110532782
TU102078 other downstream 978229 82293813 ~ 82294303 (-) False LOC110532782
TU103830 other upstream 209635 83484056 ~ 83485937 (-) True G94201
TU104323 other upstream 526911 83801332 ~ 83802471 (-) True G94613
TU104308 other upstream 884402 84158823 ~ 84160764 (-) False LOC110531033
TU104309 other upstream 884402 84158823 ~ 84160764 (-) True LOC110531033
TU104557 other upstream 929066 84203487 ~ 84204464 (-) True G94821

Expression Profile