RNA id: TU103722


Basic Information

Item Value
RNA id TU103722
length 4295
lncRNA type sense_over
GC content 0.41
exon number 3
gene id LOC110530724
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 83386983 ~ 83409300 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcctacctggcttcgccacactccccgtgtgcccccccaatacatttttggctTCCTACCGCGCCGCCGTGCTGACTCCATTCGCCGGTATCCCTCGtcacactgctccagagaatcccaggcggactccggcactctcccttggtcgaccgaccacctgtctatctcctcccaagtagtgatACAGTCCAGATCtcgctcccatgtccagaaatcctgacatcgctgctgctgctgctgctgcccgttaccacgcagcttggtccttttgtggtgggtgattctgtcacgatcgtcgtaagaagcggaccaaagtgctgacacaagcaactaacatagacaatcacccacaacccacaatgacaaaacaggctacctaaatatggttcccaatcagagacaacgactaacacctgcctctgattgagaaccatatcaggccaaacacagaaacagacaaactagacatctaacatagaatgcccacttagatcacaccctgaccaaacaaaacctaaaaacatacaaagcaaactatggtcagggcgtgacagtagttTAATCTTCCTTTTGGCTCGTCAATTTAATTTTCCAATGACTGCATGTTAGCTAGTAGAACGGAAGGTAATGGGGGATTATTCGATTGCCTACGGATTCTCTGAGGGCAGCCCGACCTCCGTCCTCTTTTTCTgtcttctcttcacgcaaatgacggggatttgggcctgttcccaggAAAGCAGTATGTCCTTCATGTCGGGCTCGTTGGACTCGTTAAGGCAAAAAAAAGCTTTTGctagttcgtggtgagtaatcgctgttctgatgtccagaagttattttcggtcataagagacgataGCAGGaacattatgtacagaataattgtaaaaaataacactatttttttaaacaaaaacacTTAAAACATCAGCCATCTTCTACGGTGCCATGATACATGTGCCATGATACATGTCTcattgtaatcaaggtatgaaattattGTATTTGAAAATGATCTATTTTTGAGCTTAGTTGTGGgaaatttgcagtgtacaaattctTCTGCCCCCCCCGACCATCGTCTCTGACAAAAAtcatcctgcagctgaatctagttgtctACCCCTGCcttaagacactgcatctcagtgcaagaggcgtcactgcagtacctggttcgaatccaggctgcattacatccggacgtgattgggagtcccatagggcggcatacaattggtccagcgtcgtccgggtttggccggtgtaggccgtcattgtaaataagaatttgttcttaactgacttgccttgttaaataaaggttaaaaaatacaaaataaacataaaaaatattaatgcaatacgtttaaatcaaatcaaatattattggtcacatacacatggttagcagatgttaatgcgagtgtagcgaaatgcttgtgcttctagttccgacaatgcagtaataaccaacaagtaatctaactaacaattccaaaactactgtcttgtacacagtgtaaggggataaagaatatgtacataaggatatatgaatgagtgatggatatatgaatgagtgatggtacattaaattatattatgtaagttaaacatacaaatattttaaaacagtttaattacagtatatatttttgaCAGATGACTGACATTACTGCCCCCACTACAAGAATGAAATACTTAAATAAATACATgcaattttgtccttgaaacatttaattgaaatactgtagaattcccggatgagcccccacttgtcacgaaccggctcaaagcccgtaacaaagggagacaacgtggaggtaaggagtaacaaaagatatttattaactaaagcaactaaggaaaatatacaatgatgtgtgtaatcagtaatcagtagtgtaagtgagttttgcgtgcatgaatgtgataatgcagggtgttgaaaggtgccaaagcaaacaaacaaaaggccaccaagaaccacaacacaatctacaaaggtgtctgcatggagagagtctcctccagaatggggaaggggtgtatttatcctgggaaacacctgggcccaggtgtttcccatgtagctgacgaccctctcaactccgcccaccggcatcctaataaggaaacaagaacaaagacaaaatacggcagacagagtgggagggtcgtcacaattcattcctatggaggactgctcctactggggagtggCAATATGGCTGAccagtggcttcaaagcctctcaatggtcaatacatagcatcagcaatctagggtttatatacatcattggttaACACCCATAACTTACTCATTGTTATTGTTGAAAGATGTTATAGAAGATGCTTGAACAATATGTGTTGCCACACTGTTGCTGCCTGAATTAGTAATTGTTGTTGTGTTTTTCCCCACTTGGCTATCATTGCTCAGGTTAATGGTACAGTAACATGCTTTTAGATTCATTTGACTGGATGACATTGTTATCTGACTGTGTATGAAGAGAATATGTCAACCTTACACCCTTGTGATGATGTGGTGTGACGTGTTGTGTGCTTCTTCCATTACGCATGTTCGTCCATACAGAagtcatgttgatgtgatgtttgaaaatgtatttcaccGCTCAAACTACAGTCatattttctctgttttcttcAACTCTCAAGTTCAGGTTTCAGATAGTACTTTATATACAATATTTTCAGTTGATTCCCTTCctatcattttaaaatgtttggTTCGTTTGAGAGTTTCCCTCCCCTcggatctgtttgtgctcttgccagtTCCATTGCTTTCATCGTCAACCCAAACGTTAGCCATGGCAATGActgacaaggagttggcatgcTAGCACTAACAGACTGGTAATCGGGCTATGTTATCAGTCCCTCCCTCCATGTAGTTGGGGCTGGTCTAAGGTTTAGTAGGTGATCAGTACATGCTGGGCATTCTAACCCTCTGCTCTCTCCGTGTTCCAGTCAAGTGTATTAAGAACACACCTGCCTACTTTGCAGAGAGACTCTACAAGTCCATGAAGGGGGCCGGGACCAAAGACAAAACCCTGATTCGGATCATGGTGACGCGTTCTGAGGTGGACATGCTGGATATCCGTCAGGAATACGTCAAGAACTACGGCAAGTCACTCTACACAGACATCTCTGGAGACACCTCAGGGGACTATAAGAAACTGCTGTTAAAGCTGTGTGGAGGGAGCGACTAGAGGGACCATGTCAGCTCTCTATGGGATCTCCTCCACACTATATCCATTTACTGACTGGCCTATAATATAATCATTATCATAATATGTGCCATTCTTCCAATCTGTCTGACTGTCTTCCTCTGCACCACAATCAGCAGTTCTGCATGCCATGCCATCCATTTTATCAACGCAACTGTTGTCACATGTTATGATATGAGAACATCATGTCCTAAAGCTGTTCCTTTTCTATATTTTTATGAGCaacaaagtatatatttttcaaTAAGTTTTCCTTTGATTGGTATTATATCTTAGTCTATCTGAAAATGCCCTTAAAGGTACAATGTGCAACATTGATTAGATTTGGAATttaaatcaatatatatatattttttaaagatatatTTTAATTTAACCAGCCTGTGCCAATATTATGCGTATCTAATTGTACAAGTTAATTCAGTACTAATTGATTTAGCTGAGCAGTGTTGAATACGTTACTCTGATAAGAATAATTAGCAGCTAAAATACCAAAGTGGTCAGTTTATATTTAAGCAGTTAATGCCCGAGtgggtgtgatatatggccaatataccacggctaagggatgtTCTTAAGCAGTACCTGGATACAGCCCATGATATATTGGCcctataccacaaacccctgaggtgccttattgctattataaacttgttaccaatgtatgtaattagagcagtgaaaataaatgttttgtcatacacgtggtatatggtctgatataccacgtctgtcagccaatctgcattcagggcttgaaccgcCCAGTTTATAATTGTGTTTATATGGTGTGTGTACACTATCACTGTTGTTTACTTTTCTTTACACTCACTCatgtgttttcttctgtttgctACAAGCGTAAGTTTCAAGTTTTTAAtggtgcacaagtacagtgaactgTATTTTTCTTTGAGCATATCTGTCAATATAACTCCAAACGTAAACCTCATTGCATCACAATTCAGTAACGGTGCTCTGATGATGACTACATCTGAAAATAAATGTTGAGAAACATGGCTGTTGTTTCCCC

Function

GO:

id name namespace
GO:0050819 negative regulation of coagulation biological_process
GO:0005509 calcium ion binding molecular_function
GO:0005544 calcium-dependent phospholipid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU103753 lncRNA downstream 4802 83381935 ~ 83382181 (-) True G94130
TU103734 lncRNA downstream 38496 83348259 ~ 83348487 (-) True G94111
TU103730 lncRNA downstream 46472 83340292 ~ 83340511 (-) True G94107
TU103727 lncRNA downstream 64011 83322726 ~ 83322972 (-) True G94104
TU103725 lncRNA downstream 64474 83319901 ~ 83322509 (-) True G94102
TU103809 lncRNA upstream 62169 83453980 ~ 83480125 (-) True G94180
TU103835 lncRNA upstream 103185 83494996 ~ 83495230 (-) True G94206
TU103837 lncRNA upstream 104267 83496078 ~ 83496284 (-) True G94208
TU103820 lncRNA upstream 107460 83499271 ~ 83499488 (-) True G94191
TU103840 lncRNA upstream 108533 83500344 ~ 83500657 (-) True G94211
XM_036986952.1 mRNA downstream 12360 83272529 ~ 83374623 (-) False LOC110530648
XM_036986957.1 mRNA downstream 12360 83272529 ~ 83374623 (-) False LOC110530648
XM_036986964.1 mRNA downstream 12360 83272529 ~ 83374623 (-) False LOC110530648
XM_036986961.1 mRNA downstream 12360 83274840 ~ 83374623 (-) False LOC110530648
XM_036986908.1 mRNA downstream 119820 82955265 ~ 83267163 (-) False LOC100301648
XM_036987115.1 mRNA upstream 284253 83676064 ~ 83701456 (-) True LOC110532793
XM_036987195.1 mRNA upstream 321541 83713352 ~ 83718497 (-) False LOC110530770
XM_021614089.2 mRNA upstream 321541 83713352 ~ 83720755 (-) False LOC110530770
XM_036987207.1 mRNA upstream 321541 83713352 ~ 83720755 (-) False LOC110530770
XM_036987214.1 mRNA upstream 321541 83713352 ~ 83720755 (-) False LOC110530770
TU103453 other downstream 425661 82949614 ~ 82961322 (-) False LOC100301648
TU103475 other downstream 425661 82949614 ~ 82961322 (-) False LOC100301648
TU103482 other downstream 425661 82949614 ~ 82961322 (-) True LOC100301648
TU102047 other downstream 1085136 82295312 ~ 82301847 (-) True LOC110532782
TU102078 other downstream 1092680 82293813 ~ 82294303 (-) False LOC110532782
TU103830 other upstream 92245 83484056 ~ 83485937 (-) True G94201
TU104323 other upstream 409521 83801332 ~ 83802471 (-) True G94613
TU104308 other upstream 767012 84158823 ~ 84160764 (-) False LOC110531033
TU104309 other upstream 767012 84158823 ~ 84160764 (-) True LOC110531033
TU104557 other upstream 811676 84203487 ~ 84204464 (-) True G94821

Expression Profile