RNA id: XM_021614058.2


Basic Information

Item Value
RNA id XM_021614058.2
length 2827
RNA type mRNA
GC content 0.46
exon number 7
gene id LOC110530770
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 83713352 ~ 83721914 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTATGGATACATTCGGGTCCTGATTGAACTCACACATCATGGCAACGGACGATGCAGTCTCACCCGTGGTCGTCCTGTGATCCCCGACCACACTCAGGGGGACTATCACTTTGTCCGCTCCTTCGTAGCTGGAGTCAGATGGTGAACATGCCAAATACACCATTGCTTCTCTGGACAGAGTGAAGATCTTACTGCAAGCCAACAGTCCCCACGACAAAGACCTGGGTGTGGTAGCTACTCTCCGTGTCGTGCCAAGAGAGGAGGGTTACCTGGGGCTCTATAAAGGCAATGGGGCCATGATGGTCAGGATATTCCCCTACAGAGCTATCCAGTTCATGGCCTTTGACAAATACAAGAAGATCCTCAGTAAACAGCTGGGCGTCTCTGGACACATCCACAGGCCCGTGGTCGGTGCTATGGCAGGGATGACAGCAGTGATATGTACGTACCCTCTTGACGTGATCAGAGCCTGTCTGGCTTACCAGATGAAAGGACACCATCGCTACACGGGCATCAGAAATGCCTTCCAGACCATATACCTAAAGGAAGGAGGCATCCCTGGCTTCTACAAGGGACTGATCCCAACCCTTATAGGCATGACTCCATAtgcagggtTCTTGTTCATTACCTTCAGCACGTTGAGGACTTCCCAGAGATACTGGGACGACCGTCCTCAGACAACCCAGAGGTGCTGGTGCTGTAGACCCACGTCAACTTGCTCTGTGGAAGGGGTGGCCGGAGCTGTCCACAGACCATATAGCTGTGGCCTTTATCACCTATGGGTTGATGAAGCAAACCATCCACCTCAACTAGCTGCTCCCTCACCATCCATCTCTACCCTTCATCGTTGCATAGCGGGACTGAGGCACGTTCACTGGGGATAAACGTTCTGAAAGGTTTAGAAAGATCCCTAGCAGCTGTCTATCTCAAAACAGCCTGAACAAGAGCGTTCTCTGGGGCTATATGTTCTGTAATGTTAAGGGAATATTGCCTATTAGATATGTTAATTTGCCCTAGTAAACGTTTTCAGTTTTAAGGAAGTCGGCTTCCATTCGGAGGTGTTGACCCCTGCTACCAGAGGCGGCCATTGTGGCTCAGCCACTGGAGCCGAGCCTAGTAGCTGCTTACCCCAGTCGGAAAGCAGAGGAATGCTAGGCACTGGGCCCCATGGCAGTGCTAATCCAGTGCCCATGTCTGTGTCTGCGCCTATAATGTTGTGCTGAAACCATCCGCCAAACCTGTGGCTTGGCTTTGGACAACACCCTGGCAACTATTGCCATGGATACCTATAGACAATGGCTTCCTCTGCTTCGATGGGCAGCTATGGGCAATGAACCCCTAACAACACTCGTTGGTAATGCCATAGAAACCCAATTATGTACACTGCTCCCCCATCCTACCCCACCACCCGCCCGTAAGAAGTCACCCAGCCAATGACGGAAGGGAAAGTCACACCGGACAATCTGGCTTATCCAATCGGAGGCCTTCTTTTCCTCATGTACCTACAAATCTAGACCCATAATCAATGAGACAAGGATTTAAATGTGTAGTATGTCAGTTATAAGAGTCCAGATTCAACTATCGAACATTTTATGAGAATTAAGAAACACTCCCCAGGCTTGTGTTGAACACAGAACTGTACTTTTTGAGCAGCCTAAGTCTAATAGAATCCTAATGATAAAATCCCACATCAGTTTGTTGAAAACTGAACataattaattttttattttgatACTCCCCCAAAAAGTCTTATTGTCTGTCTGACATCGAAACAGGTTTGCTTTCTAATTTGTTCACCCCATGCAGTTTAACAGATGTGTCTCTGTAGGAGTGTTGTCTTTGgtattgacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttaaagcaTCTGTTCAGGTTTCAGTGTGTAGTGTGTCTCTTGTCTATGGTGCAGGTTAGATTCAGGGAATGAGGCCGTGATTTACTATTGTAGCGTGCAGAAACAGTTATGTCTCATTCTAATGATGTTGTGTATCTACCGGGAGGATTTAGAATTTATAGAGATGTGTGTCTATGAGAGAGCAAAATTCAACTTTTCCAAAATGCCCAGGTTTCCCAGACATCCCAGGTACAGGATGGAAATGGAACACGTTGGAATTTTGGGAAACTTACCTACCAGAAGACTGGTGTTGACATTGTTCCTATAAGAGGACCATGAACTGATGTATGGACTGAATGGCGGTGGTTCTAACATATGTTATATTTGCTCCCCGTCTACATTTcctgtgttcaggtgtgtgtagAAAGAGTTTGTCAGCTACTGAGATCTAGACACTagcataaataaatacatgtaagaTGGTGCTATATAATTTGAAGCACCCAAATGGAAACCTGAGTTAAGCACTTCAGGAAGAAACTTGCACTTGGAAGATGTGGATGTctattaaggcagccccccgcacctctctgattcagaggggttgggttaaatgcggaagacacatttcagttgaatgcattcagttgtacaacctgctagttatccccctttcctttGGCTCTTTTGTGTTTATTTATGATAGTGTAGTATGACTCTGTCCACAAGGGGTCAGAAACGAGTCCGTAATATGTTTACCCACAACAACAGCCTGCCCTGGATGTAACTGGACTTTACATTACCATGCTGAATCAAAATCAAATAATGTATTgatcacatgcgccaaatacaatagGTGTTGGCCGTAccgttaaatgcttacttacaagcccttaaccaataatgcaggGTTTTAACAAAGAAAGAGAAAAtgtgctaaataaactaaaggaacgatagcctca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU103959 lncRNA downstream 26141 83686905 ~ 83687211 (-) True G94316
TU103900 lncRNA downstream 37424 83669522 ~ 83675928 (-) False G94259
TU103901 lncRNA downstream 37424 83669522 ~ 83675928 (-) True G94259
TU103957 lncRNA downstream 46434 83666572 ~ 83666918 (-) True G94314
TU103956 lncRNA downstream 47470 83665655 ~ 83665882 (-) True G94313
TU103989 lncRNA upstream 3148 83723908 ~ 83725485 (-) True G94333
TU103990 lncRNA upstream 5969 83726729 ~ 83727048 (-) True G94334
TU103992 lncRNA upstream 11067 83731827 ~ 83732179 (-) True G94336
TU103993 lncRNA upstream 11854 83732614 ~ 83732829 (-) True G94337
TU103997 lncRNA upstream 19452 83740212 ~ 83740599 (-) True G94341
XM_036987115.1 mRNA downstream 11896 83676064 ~ 83701456 (-) True LOC110532793
XM_036987024.1 mRNA downstream 304052 83388438 ~ 83409300 (-) False LOC110530724
XM_021613980.2 mRNA downstream 304053 83386997 ~ 83409299 (-) False LOC110530724
XM_021613988.2 mRNA downstream 304267 83386997 ~ 83409085 (-) False LOC110530724
XM_036986961.1 mRNA downstream 338729 83274840 ~ 83374623 (-) False LOC110530648
XM_021614159.2 mRNA upstream 106189 83826949 ~ 83841893 (-) False LOC110530866
XM_021614203.2 mRNA upstream 230297 83951057 ~ 83956958 (-) True si:ch211-198a12.6
LOC110532804 mRNA upstream 245405 83966165 ~ 83967505 (-) True LOC110532804
XM_021614226.2 mRNA upstream 310794 84031554 ~ 84048130 (-) False LOC110530927
XR_002474617.2 mRNA upstream 376867 84097627 ~ 84110671 (-) False LOC110530947
TU103830 other downstream 227415 83484056 ~ 83485937 (-) True G94201
TU103453 other downstream 752030 82949614 ~ 82961322 (-) False LOC100301648
TU103475 other downstream 752030 82949614 ~ 82961322 (-) False LOC100301648
TU103482 other downstream 752030 82949614 ~ 82961322 (-) True LOC100301648
TU102047 other downstream 1411505 82295312 ~ 82301847 (-) True LOC110532782
TU104323 other upstream 80572 83801332 ~ 83802471 (-) True G94613
TU104308 other upstream 438063 84158823 ~ 84160764 (-) False LOC110531033
TU104309 other upstream 438063 84158823 ~ 84160764 (-) True LOC110531033
TU104557 other upstream 482727 84203487 ~ 84204464 (-) True G94821
TU104675 other upstream 571000 84291760 ~ 84292623 (-) False LOC110532813

Expression Profile