RNA id: TU104314


Basic Information

Item Value
RNA id TU104314
length 2278
lncRNA type read_through
GC content 0.41
exon number 8
gene id LOC110530866
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 83814162 ~ 83851846 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAAAGACAGCAAAGCTATATCAAAAGGTTATTCCCACAAGTTTTGGTTTCTGAAAACAAGAGCAATATAATAATACAACGAGATGATTCCACGAATGGGACAAAATAACCATTACATTTTCCTTTGTGATACTAGTATGATTCGGACTTCTGTATCAGCCATATGAGATTGCAGCTGGAACTGTTACAATTGCAATGCATATACAAGTGAATGGGTGATTAGTATCCATTCAAAGAACTTGAATCATTGCGCAACATTTATCACAGTATTTCACATAAAGCTTTCTTTAAGAGTAGATGTACTGCAATCTATATGATGAATATAAATTAAtcttggttaacccagaactaaagtatTGTGGAATTGGTCAGATGCTCgattaagttctgggtccatacgTATTAGGAGAAGATACAGAACGAGAATCGGAACGAAGAGCTCCACTCTCTCTGCAATTTACAGGCAAGTCAAAATGGGCCGaatgtcccctctccttccaaaATGTGAAAGATGCCAACACCTACAAAATCGTGATgtgtccaaataaccagtgaaGAAAAACCCAAGCAACAGAATTAATGCTGCTCGTTATGTCATGCATCCCGTTGACATATCTATGATACCATTTGTTTACGTCGTCTCTCCACGAGAGATTAAATATAAATGAGCATGTGCCCATGCCAtaaatgtaaatgtgttaatgtgatTACTATGTGTAGACTCCTGAACAATGCATTCACAAAGAAACATATACAGCTAAATCATTTTGTCGTTTTAACTGTGCCATATCTTGTGATCATTTCATATAAACAATTGGTCATGCTTGGCCTAGGGATAGATTTAAACCATATCCCTTAACTCAAACCATCACAGAATGTCCTTTCATcagagaatatatatatttttttaaacatatgaGGGTAAATTTGTAACTCAACCTGCaaagaaataaatataaaatatataacatAACTGCCTTCTTCAGAGTTTTCGGCCTTTACAATGGAAGAGAAACAGTAtaaatgtgtcagtgtgtggccTGGCTTCATTGTAATAGTAATATACAGTATTTGAGTAAATGAAAGACAAAAACAACAGCCTACAGCACACTACAGTTGGTATTTTGAAAGGGCAATGCTGAATATTATTTTAAAACATGAACATTGCACTAAGGTAGCGGAAGCAGTATCTACCTGGTTTGCAAGGCTTCTATACAACAGACTTTATCTATAGGCCTGGGGGCTGACAGAAGTTTTATATGTCTCCTAACTTGCGTTCCAACTCGGTGAAAACCGTTGCATTTACATGATCCACTTCATCTTCCACCTGTTCCACGTCATCCACCTCAGGGATGTAGAACTGCAGCATGTTCTGGATGCCATTCTTCAGGGTGACAGTAGAGCTGGGGCAGCCGGTGCATGAGCCAACCAGCTTCAGCTTCACCGTGCCGTTCTCAAAGCCCTTGAAGATGACATCACCGCCATCCTCCATCACCGTGGGCCTGATCCGTGTATCTAGAAGCTCCTTTATCATTGAAACAATTTCATCATCATCTTCAgagtgaTGCTCTCATGGTGGGTAACCCCAGTGGTTATGGGGTCTCCACTGTCAAAGAACTTAGTGATAGCATCCATGGCATGGTGCTTGATGTCCGTCCACTCCACATCATCATCTGCCTTGGTCACTGTGATGAAGTCAGGACCATAGAACACACTTTTCACTCCTTCGATTCCAAACAGGTCCCTGGCTAAGGAGGAGCACTCTGCAGAGCTTGGAGAGGGGAAATCCAGGGTCCCCACCCCCAACACAGGCTTACCAGGGATGAACTTCAAGCTCCGTGGGTTTGGTGTGTCCTGTGTCTGAATGGACAAGTGTCGCACTACGAACTGTGGGGGTCCAGTCAGAGGCAGAAGTTGAACTTTTCTGTAGTTCGGGCCAATGCATTGTGTGTGGAACTGGTTTCTCGTGTTGATTGGAAACCTAAAATGTGATGTATTTCGTGACTGAATCAACCGTTGAAGACTCCATCTTATGCGGGCAGccatttcatttgtttttaaagtgAGGACCCAAGACACAGCTGGCTTCACATATCCTGTTTGAAATAGATTCCAATTGCTCCACAATTACCTTTTTAATCGTTAGTTTGATAAGTAAATGTTCTTATTCATTACAATAAACAAACATCAATTCAAACTATATAGCTTATAGATACTCTCGAAGTACAAATAttgtctcccgagtggcgcagtggtctaaggcactgcctatgtgcta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104315 lncRNA downstream 23087 83814162 ~ 83817510 (-) False LOC110530866
TU104048 lncRNA downstream 42586 83794650 ~ 83798011 (-) True G94374
TU104043 lncRNA downstream 49031 83791307 ~ 83791566 (-) True G94372
TU104041 lncRNA downstream 54200 83786173 ~ 83786397 (-) True G94370
TU104040 lncRNA downstream 54882 83785368 ~ 83785715 (-) True G94369
TU104376 lncRNA upstream 33256 83885102 ~ 83885935 (-) True G94656
TU104375 lncRNA upstream 36251 83888097 ~ 83889981 (-) True G94655
TU104341 lncRNA upstream 97056 83948902 ~ 83950168 (-) True G94630
TU104413 lncRNA upstream 106762 83958608 ~ 83958847 (-) True G94693
TU104422 lncRNA upstream 116981 83968827 ~ 83969103 (-) True G94702
XM_036987189.1 mRNA downstream 118683 83713352 ~ 83721914 (-) False LOC110530770
XM_021614037.2 mRNA downstream 119083 83713352 ~ 83721514 (-) False LOC110530770
XM_021614203.2 mRNA upstream 99211 83951057 ~ 83956958 (-) True si:ch211-198a12.6
LOC110532804 mRNA upstream 114319 83966165 ~ 83967505 (-) True LOC110532804
XM_021614226.2 mRNA upstream 179708 84031554 ~ 84048130 (-) False LOC110530927
XR_002474617.2 mRNA upstream 245781 84097627 ~ 84110671 (-) False LOC110530947
XM_021614242.2 mRNA upstream 245783 84097629 ~ 84110671 (-) True LOC110530947
TU104323 other downstream 38126 83801332 ~ 83802471 (-) True G94613
TU103830 other downstream 354660 83484056 ~ 83485937 (-) True G94201
TU103453 other downstream 879275 82949614 ~ 82961322 (-) False LOC100301648
TU104308 other upstream 306977 84158823 ~ 84160764 (-) False LOC110531033
TU104309 other upstream 306977 84158823 ~ 84160764 (-) True LOC110531033
TU104557 other upstream 351641 84203487 ~ 84204464 (-) True G94821
TU104675 other upstream 439914 84291760 ~ 84292623 (-) False LOC110532813
TU104684 other upstream 439914 84291760 ~ 84293583 (-) False LOC110532813

Expression Profile