RNA id: LOC110532804



Basic Information


Item Value
RNA id LOC110532804
length 813
RNA type mRNA
GC content 0.45
exon number 3
gene id LOC110532804
representative True

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 83966165 ~ 83967505 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATGCACAGAGCAAGCTCACTGGTGCTGGAGACCTTTTTAACATGGTGTCATCACAAGTATCTGGACATTTTCGATACAGGAATCACTGTCACAAACCAGTTGTTCTTTCAATGACAGGAATCTGAGTATGCTCAAACTATCTGGTGACAAATTACTCAGGAATATCTCAAATAACCTCTCTGGAAACGTTAGATATTTCATCTTGCGGTATTGAGAAGTTGCTCTGGAACTCTTTTACCACTAAAGTGTTTGACTTCGATGTTGAATACTGCACGCACATCTTGAGAGTTAAACTTTTAGTGCCCATCTTTGTCATTTTTATTCTTACATTGTCAGTCTTGGCCTTCAAGTTCCAGTTCTACCTGTGTTACTGCTGCATTTTGCTGAGAGGCTACAAGATCTCCCACCAGCAGGATTGTCTTTACGATGTCTTTGTGATCTACTCCAGCAAGGACGAGGCCTGGGTGATGGAGGAACTGGTGGAGAACCTTGAGAAAGGAGGCCCTCCCATTCAGCTGTGCCTCCATGAGCGGGACTTTGAAGTGGGCAAGTCCACCTCCTCCAACATCATAGACGAGGGCATCATCGGTTGCCGCAAGGTAATCTCGGTGGTTTTGCTCCACTTCATTGACAGTGCGTGGTGTCGCTTTGAGTTTGAGGTGGCTCAGTCCTGGCTGGTGTTGGAGGGAAAACCCAATATCATTATACTGGAGgacgtggaggaggagaggaccaaAAGTGTTTGGGCTCCACAAATACCTGAAGAAGAACACTTACCTGAAATGGAAGGACATCTCAAAAACACAACCATAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU104413 lncRNA downstream 7318 83958608 ~ 83958847 (-) True G94693
TU104341 lncRNA downstream 15997 83948902 ~ 83950168 (-) True G94630
TU104375 lncRNA downstream 76184 83888097 ~ 83889981 (-) True G94655
TU104376 lncRNA downstream 80230 83885102 ~ 83885935 (-) True G94656
TU104314 lncRNA downstream 114319 83840597 ~ 83851846 (-) True LOC110530866
TU104422 lncRNA upstream 1322 83968827 ~ 83969103 (-) True G94702
TU104427 lncRNA upstream 7507 83975012 ~ 83975273 (-) True G94707
TU104428 lncRNA upstream 9092 83976597 ~ 83976815 (-) True G94708
TU104441 lncRNA upstream 64092 84031597 ~ 84104730 (-) False LOC110530927
TU104443 lncRNA upstream 64092 84031597 ~ 84104730 (-) True LOC110530927
XM_021614203.2 mRNA downstream 9207 83951057 ~ 83956958 (-) True si:ch211-198a12.6
XM_021614159.2 mRNA downstream 124272 83826949 ~ 83841893 (-) False LOC110530866
XM_036987189.1 mRNA downstream 244251 83713352 ~ 83721914 (-) False LOC110530770
XM_021614043.2 mRNA downstream 244651 83713352 ~ 83721514 (-) False LOC110530770
XM_021614226.2 mRNA upstream 64049 84031554 ~ 84048130 (-) False LOC110530927
XR_002474617.2 mRNA upstream 130122 84097627 ~ 84110671 (-) False LOC110530947
XM_021614242.2 mRNA upstream 130124 84097629 ~ 84110671 (-) True LOC110530947
XR_005053182.1 mRNA upstream 155186 84122691 ~ 84126832 (-) True LOC110531009
XM_021614340.2 mRNA upstream 190024 84157529 ~ 84197300 (-) False LOC110531033
TU104323 other downstream 163694 83801332 ~ 83802471 (-) True G94613
TU103830 other downstream 480228 83484056 ~ 83485937 (-) True G94201
TU103453 other downstream 1004843 82949614 ~ 82961322 (-) False LOC100301648
TU104308 other upstream 191318 84158823 ~ 84160764 (-) False LOC110531033
TU104309 other upstream 191318 84158823 ~ 84160764 (-) True LOC110531033
TU104557 other upstream 235982 84203487 ~ 84204464 (-) True G94821
TU104675 other upstream 324255 84291760 ~ 84292623 (-) False LOC110532813
TU104684 other upstream 324255 84291760 ~ 84293583 (-) False LOC110532813

Expression Profile