RNA id: XM_021614226.2


Basic Information

Item Value
RNA id XM_021614226.2
length 6163
RNA type mRNA
GC content 0.42
exon number 9
gene id LOC110530927
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 84031554 ~ 84104730 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATATATAGGACCATGTGTAGATAGTCCAGGAGTTCTGTTGGATAGACAGTCAATTGGCAGcaaccctctcgctctcttttttctctctcgctgtacCTTCTCTCTCTCAAGAGAACGAGCTGGGATATAAAGCTCTCACTGGAAAGTTTCTCTCTGTTTTTTTTAGTGGTTCTGAGCACCTGCCTGTGTCAAAATGAGTGACACTCTGCTGGATGATGGGTCCTTCATGTTCACTTCGGAGTCTGTTGGAGAGGGACATCcagACAAGATATGTGATCAGATCAGTGATGCTGTCCTGGATGCTCACCTGAAGCAGGACCCAAATGCCAAGGTCGCCTGTGAGACGGTTTGTAAGACTGGCATGGTGCTGCTGTGTGGAGAGATCACGTCCCGGGCCAATGTAGACTACCAGAAGGTTGTCAGAGACACCATACAACACATCGGTTATGACAACTCAGACAAAGGTTTTGACTATAAGACGTGTAATGTGTTGGTGGCTCTGGAGCAGCAGAGTCCAGACATCGCTCAGGGTGTCCACATCGACAGGAAAGAGGAAGACATGGGAGCTGGAGACCAGGGTCTGATGTTTGGCTACGCTACTGACGAGACAGAGGAGTGCATGCCTCTCACCATCGTCCTGGCTCACAAACTCAATTCCAAGATGGCCGAACTCAGACGCAACGGAACCATCCCCTGGCTCCGCCCCGACTCTAAAACACAAgtGACAGTACACTATGAGCAGGAGCACGGGGCAGTGATCCCTATAAGGGTCCACACCGTGGTCATCTCTGTTCAACACGATGACTTCATAGGCCTGGAGGAACAGAAGGAGGTGCTCAAGGAGAAGGTGATCAAGGTAGTGGTTCCGGCTAAGTACCTGGATGATAAGACCATCTACCATCTTCAGCCCAGTGGGCGCTTCGTCATCGGAGGACCCCAGGGTGATGCTGGAGTGACGGGTAGGAAGATCATCGTTGATACGTACGGAGGCTGGGGGGCCCATGGTGGGGGAGCTTTCTCTGGTAAAGACTTCTCCAAGGTGGACCGCTCGGCTGCCTATGCTGCCCGCTGGGTGGCCAAGTCCCTGGTCAAGGCCAAACTGTGCAGGAGGGTGCTGGTTCAGgtATCCTACGCTATCGGAGTGGCTCACCCTCTGTCCATCTCCGTGTTCACCTACGGCTCGTCACAAAAGTCAGAGAGAGAGCTGCTGCAGATCGTAAACAAGAACTTTGACCTACGACCTGGTGTCATTGTCCGGGAACTGAACCTGAAGAGGCCAATCTACCAGAAGACAGCGTGCTACGGCCACTTTGGCCGGAGTGAGTTTACCTGGGAAGTCCCCAAGGAGCTCAACTACTAAACATCTCCCCCTGGTGGTCAAGTATATAACAAACTCTTAAACACCCCCGTGGTTAAATATGTAACAAGTATATAACGATCCCTCCCAGAGATAGAAAACAGGCCCCCTCTACGGGCTACAACCACAAATGGTTCTGCTTTTTCATTGGCTAGTGTTGAGGTTAAGGTTTAGGATTAGGGTGAAGGGAGATGTTTTTGGTTAGTGCTAAACAATCATTTATGTGATTGTAGCCCATAGAGGGGTTTGTTTGTTAATGCTTCTTATCTTGAATAAGAGGGATGCAACTTATAGAGGGGAATctttattctccctccctccctctctctctcctccatctctttttCTATCACATCAAACATTTCAGTCAAGAGAGAGGATGAACTCACTGTGATTTTAATCAGACAATCCACACATTTTCATTCAGATAAAAGGTGTCCTTTGTATAGTGTCTCACTTATGTGCCTTAGTATCAAAACAATGACATGTTAGAAGTATTACATGTGCAGAAGTATTTATTCACACTCACTCTGGACAAATAGTGATTCCATTGTCACTTCTGCTATtaaacaaagaaacaaagaaacaaatACAATTAATATATAAAGATaaatattgaatatatatatatatataaagcagagCATTTAGCCTCAAAACTGTGAATTAGTGATGTGTGGTTGGACTCATAACCAGCAGTCGGGTTTAGGGGCATGACATACAGTATTGTGTGGATGAAGTGCGGGTGAGTGGCgggcaggttgaataaagagaaaacagtGCATTAAAATTCATAAATGTATAATTCTTGTGCTATTCATACCTATGGGCTATTTTTATCTGCCGTTAGTGCGTAGCCTGAGCACCTAACTGTAGCGTGCCCAATACATGCAAATTCTCAAATTCTTTTGAGAATTTGGACAGAAAAAGTTTGTCGATCCACTGAGGCAAAAAAAGGACAATGTcggagtttaattcaataagagaaaaacTGAGAAATGGAGTGTTGAAAATAAATAGAAGGTAAGGCCAGGGAAAGATTTGGTAACGTGGTAACAGTGCCAgctatgttatgtgtgatgattgtgagacGCTATACAAATTCGATAGTCACAAGACTCGGACTTCAAAATGCACGTCAAGGGAACTGTTcggttcagatgggttaaatggaaaagTGACCTTACTGTAGGTCTACAACCCTTCACTTAACCTGatataatattaactcctgcaaaATTAAGCATTTGTTGCAGAAACATTATACACCAAATGGACATTTTGACTCGTAACAGAAGTGGGGAAATATTATGAGTGAGACAGAGTGAGAagttagggaccgtctgtaaaggtgGAGGTGCTATCTTTACCAGCCCCATAAAAGCTGatcgtatttcaaccacataaagcATGCATCCAAGCCAAACTGAAATCTTAAAACATGTTGGGTCATTTTAACAGCTGTTAATTTCCTGAAAACCAAtcaaactgattttttttttttgggggggggggggtccctctTTTTTTTGGTATTGCACCGGCCCCTAAACCTATTGTCTGCatgagagaagcagagatgaaaGAGAAAACAAACTTTACTAATGTCAACTGGATTGAAGCATTTATTCTATTGATTTATGCACAGCATGAgggtgttaaattaacacacacCTTATTTGCAATATTCACAGAATGCCTTGCCGTTcgagtgaattgtagagttaccacccatgactattTGTTAGTggcagagacatggttgttgcattcatccaTCATTCATGCTTTCCTGTGACTTTCACCAAGTGTGATTCTAAGCAAATATGTTATTATTGTttcacacaatacaacacatatttCACAAGGCCTGCAACTCACATCACTCTATATTGCTAAATGATGTGTAATTCCGGTTGGATTCCAGACAGATTGGGAATATCCAACATTTGGAATTTGATTCACCCGCAACCTGCATTTATAATGACAGCCGGGTTCGGAAGACTAAAATATCAGACTACCTAAAGCATTTCACAAACCTGTTGTTTTCGACGCATGTGataaaaacaatttgatttgatctaaacTGGAATACCATTACAGTAAAAGGTGCAAGAAGTCCaagtaacagattggattagtttcgaaaaatgtatgttatttatgagtagcataagattaattaatcaatcatCAATTAATAAACATGCAAAAACATACTGAAAAATGTTGACAGCAGATGGGAGTTTTATTCATAACATtggtaatttagctagctaacatacattttgagaaaacaaattatattaactggctagctagcaaCGTTTAGTGATCAATGAGACTGAGAGCTAGCTAACCAGCTGAGCTAGCAAACAATGTAACAAGTATAATTTCGGATTTTAAAAATACTCCCATCAATGGGCTCTGCATTTCAGGAATCACAGTAGCAAATACTCCTGGTGCACTATTCAATGAATTAGCAATTTAAACGTGACTTTTTTGAAGGAAACTCTGTTTGTGCCGTAGCCCTCGCTGTCTTTCATgtggtgcgttcgtaaattcaatcaggagtgccagagtgcgctcagaGTGCCCTCAGggagttcgtaaattcagagcgtttcgctctcgcTGCGTTCATAGCGGACACTGGGGACGAGGGGTAGGGTTGATCGAGTGTTCTGgcctagcttgctagctacttccagccACAAACGAGAGAACaaatcactgaccatttcaaTCGCCCTAGCAGTGCTGGTTAGCctattttcatgttatccagagcattggtgattAACTGCTGCGGGCTACAATTTAATTACGCATTTtatgccgacgtttactgacaccggccacattcaacgggtgttgagcgtctgtaaattcatcagttattctgcgctctggtacactcagacgagagtgctctgaaaccagagtagatagccagaaaTAATGTAAGAACCTTAAACGTTGGAAGTCAGAACCTTAAACGTTGGATGTCAGACTCGACGACAGTTACTCCCATTGGAGCGCTGCGATTGGTTGCCCAACATTTTGGGGCGGGGCTTAGCTGAGGGTTAATTGTGACGCTCGTCCCTACTTTTTAATGCTATTTTATGTTTATTTAGAAAAAATATACATGTAGTGATGTCTTCTGTTTGTATTGTATTGCAATTTGTAATGTTAtatttattacaaaaaaatataaaaaacgatATTATCCCCTCCACTCTGTCCATATCACCTCAAGATGGTGCTATACATCCTGTATTGGTAGTCATCCTTATTAATCAAAGCGGAATATGTATCTGCAGGTTCAAACCACATCCTTCAATCAACCAAATATTAGAAGGGAGATCACCCTCTAACTTGGTTTTCGGATTCAGTTACAACTTATCTTTGCTCTGTATCAAACTGGTTTATATTATATGTAGCTTTGTAAAGATCAAATTCACAAAAGTCTTAATTTTGTAATTATATCATCGATACCGCAGGGCAGTTTTTACaatgcactactactactactacacaacacCAACAACAGGTATGTAGGACGACACAGGTCTCTTATCCCAGGGAGGTCTTGGGCTGTATACGGTACCTCTTACCAGTGTGTTGCAGTTGACCAAATCTAGCAGTAGACATAGCTTTGAATAATGAGGCTTTATAACCACTTATAAGGCATCATAAGGATGCTTAATAACTGTTCATAAGGCCTTATAATGCTTTATGATGTGTCTATGAACCCCTGCTCAGTCCTGTTTGACAATGCTTTTTGTATCTTCATCTGTAGTATAGAGCTACTGTAGAGCTGCTGCTGGGATCTCGCTGTAAACAATATTATCCGCCTTGAATGAATGAACTGTTCTCATCTCTGATGGCTGATAAGGTTTGATGTATTTAGTATTCTGACTTGATTGTGAGTTAATTGTTGTGATTATTTTGCTATAGGCATAAATAGTCTATGAATAAATTGCCAAAGTGCATGCTGCCAACAGTAGGTATATTATTTTGTGGACATCTTAAAAGTTTCTACATTTGTACAATTGTATATGCCTGAGATGGTGCTTTCTGAGGATAATAACATTGAGCTTCCCAAACAAACATGACAGAGGTATTTTATGTTGACAGAATTTCCCTCTTTCATCCATTTTCTCAAACCATTTGAGACATTCACTTGAGTCTTATTTGAAAAGCAGtgataagctctctctctctctctctgtatagagGTATTTTGTATAGACTCTTGTCTGTTTACATTATAAGTCTTACTCTGAGTCGCTTGGcccagtattttttttaaagaccccAATGCAGTCAAAAACTTGATTTCCTAGTGTTTCATATATATAAAAAGTGCTGCATTGGACCGTTAAGGACCTAGTAGGGGAATAGTGTATAAAACAGTCTTCCAAAATATTTCAGAGGGCTGAGTTAGTGAAACCATAAGTAAAGGACTTGAAATACCACAGATGCTTTACCTGCCCATTGTTATAAACCATCCTGAGGGGTTTCATTTTTTATCTACATAAATGCGGGTGTTTCTGCCCTTCACCCTCTGCACCTGAGTCATTGTAGCCTTGAGATGTATTCAGCTGTACTGATCTAGCTATCACCTCTTCCTGTGTCCCAACCTTGTTGTCCTAAGGAAGTTtgcccccccccaaccctctTTACCTAGAAGTTACTGTATGCTTTTCTCCCCCCACCCTCAAACTCACAGTCCTAACAGTTGGCGTAGAATCCTGAAAATGTAAATAATtgttcacaataaaaaatatttaaaaacagaAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104428 lncRNA downstream 54739 83976597 ~ 83976815 (-) True G94708
TU104427 lncRNA downstream 56281 83975012 ~ 83975273 (-) True G94707
TU104422 lncRNA downstream 62451 83968827 ~ 83969103 (-) True G94702
TU104413 lncRNA downstream 72707 83958608 ~ 83958847 (-) True G94693
TU104341 lncRNA downstream 81386 83948902 ~ 83950168 (-) True G94630
TU104456 lncRNA upstream 63867 84111997 ~ 84113710 (-) True G94726
TU104519 lncRNA upstream 66649 84114779 ~ 84115147 (-) True G94783
TU104522 lncRNA upstream 69848 84117978 ~ 84118226 (-) True G94786
TU104526 lncRNA upstream 73662 84121792 ~ 84122010 (-) True G94790
TU104319 lncRNA upstream 103226 84151356 ~ 84152116 (-) True G94609
LOC110532804 mRNA downstream 64049 83966165 ~ 83967505 (-) True LOC110532804
XM_021614203.2 mRNA downstream 74596 83951057 ~ 83956958 (-) True si:ch211-198a12.6
XM_021614159.2 mRNA downstream 189661 83826949 ~ 83841893 (-) False LOC110530866
XM_036987189.1 mRNA downstream 309640 83713352 ~ 83721914 (-) False LOC110530770
XM_021614050.2 mRNA downstream 310040 83713352 ~ 83721514 (-) False LOC110530770
XR_002474617.2 mRNA upstream 49497 84097627 ~ 84110671 (-) False LOC110530947
XM_021614242.2 mRNA upstream 49499 84097629 ~ 84110671 (-) True LOC110530947
XR_005053182.1 mRNA upstream 74561 84122691 ~ 84126832 (-) True LOC110531009
XM_021614340.2 mRNA upstream 109399 84157529 ~ 84197300 (-) False LOC110531033
XM_021614317.2 mRNA upstream 109399 84157529 ~ 84256948 (-) False LOC110531033
TU104323 other downstream 229083 83801332 ~ 83802471 (-) True G94613
TU103830 other downstream 545617 83484056 ~ 83485937 (-) True G94201
TU103453 other downstream 1070232 82949614 ~ 82961322 (-) False LOC100301648
TU104308 other upstream 110693 84158823 ~ 84160764 (-) False LOC110531033
TU104309 other upstream 110693 84158823 ~ 84160764 (-) True LOC110531033
TU104557 other upstream 155357 84203487 ~ 84204464 (-) True G94821
TU104675 other upstream 243630 84291760 ~ 84292623 (-) False LOC110532813
TU104684 other upstream 243630 84291760 ~ 84293583 (-) False LOC110532813

Expression Profile