RNA id: XR_002474617.2


Basic Information

Item Value
RNA id XR_002474617.2
length 4908
RNA type mRNA
GC content 0.43
exon number 12
gene id LOC110530947
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 84097627 ~ 84110671 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCTAGTaatcacagccacaaagtcaaaatgggcTATATcataaacattcatgaaaacaaacatttgctttttggtcttaatttaatgCTAGGGCTATGCATACGGTTAGCTAAGTTGTAaagtttaaggttaaggtttaaGATTTTAAGAAGatcaattgtagaaataggcggggtttagtCATAGTTATGACTTTGTGGTTGTGGTAACAAAGGACGAACCCGTCTTTTCGCCTCAGCTTTCAAGGTAGAGAGACTGGCACCGTGTACATCAAGCAATTCGGTGATATCACTGAGAGGTCACAGTTTTACAGCTCTCTGCAATTATATAGTGAACACAGCTGGTGGACATTGAACCAAGGTGGTCTCATAGTAAACTCAAGGATGTCTGGAGATCTGTCCCTGGACATTAACATCAAGGAGCCGCGATGGGACCAGAGCACATTCATGGGCCGCGCCCAGCACTTCTTTTTCGTCACCGACCCCAGGAACATCCTCAAGTCCTCTAAGACACTGGAGGACGCACGGGTCACTGTGGAGAACTACAGGTTAGGAGTGGTGAGGCCAGGTCTGACAGAAGATGAGCTGTGGAGAGCCAAGTACATCTATGACTCTGCCTTCCACCCTGACACCGGAGAGAAGATGGTGGTGGTGGGACGCATGTCTGCCCAGGTCCCCATGAACATGACCATCACCGGCTGTATGCTCACATTCTACAGGACGACTCCAGCGGTGGTGTTCTGGCAGTGGGTGAACCAGTCCTTCAACGCTGTGGTCAACTACACCAACCGCAGTGGAGACGCTGCCCTCACCACCAATCAGCTGGCTGCAGCGTACGTCAGTGCGACCACCGGAGCCGTAGTCACAGCCCTGGGACTCAAGTCTCTAGCCAAGCGCCTTCCAGCCGTCATGAGCCGGTTCGTCCCCTTCTTTGCTGTAGCTGCTGCCAACTGTATCAACATCCCCTTCATGAGGCAGAGGGAGTTGAAGTACGGCATCCCAGTGACCGATGAAAATGGAAACCGGTTAGGGGAGTCAGTCACCGCTGCCAAGTCGGGCATCATTCAGGTGGTGGTGTCCAGGATTGGCATGGCCGTGCCAGCTATGGCTATCCCCCCTGTGATCATGAACGCCCTGGAGAAGAAAGCCTTTATGAAGCGGTTCCCAGTCCTAAATGCTCCAGTACAGGTGGGACTGGTGGGTCTGTGtCTGGTGTTTGCTACTCCTCTGTGCTGCGCCCTGTTCCCACAGAAGAGTTCTATGACTGTGAGCAGCCTGGAGCCAGATCTGCAGGAGAGGATACGACAGAACAGTCCCCACACTACTACCGTCTTTTTCAACAAAGGCCTgtaggaccacacacacacaccgaccagCCCCCTCTGCTGGCTGAACCCTGCTAGTACAGCTCAGCGGGCAAAGAGAATAttatatttatgcttatttttGTATTTACCTGTTTGTTTACTATAATGTTTGTTAAAGGCTTTAGGATTTGATAATGGTGAGGGGTGTGTCTGAAAGGATTGAATAAGGGGGAGCCTACCTGTCAGGCTTTTGTCATCATTgtagatgaaggaaaggagacgaggAAGCCACTTCAGAGTAATGAGATGCACCTGAGGTGAGAGTAGCGTGACAGCCAAACAGACTATGGTTTAATTTGGGTTTAGTCTGGTGTATTTATCCTTCCTGGGGTTGTGGATGTTTAGTTACTGGCTGCTGTGAATGTCACAGAATGACAAAATTTACTTCCATCACCACTAACTACATACATGTCACCTCTTGTATTTGACCCCAgagttttttttgttattttttcctCCCCAAAGTGTGTTTTGTTATTTATTGCCCTTGTGTTTGAGATCGTACCCTTTTGAGCTGTGTGCACTGAAACCCATTCATGACTTAAAATGAGAAAATAGTCAAATGTAATCTGCTAGAAATCCACTCCCTCAAATTGCCTTAACTGTAGTCTAGTACAGGTAGTGAAGGATAACAGTTGGTTTATGAGCACATTAGACTGACATGCTAATGAATTGCTTTTTGGGTCTACCAGggttttgttttctgttgcaaaatgttttgctccaGTGAGTGTGCCCCAATGAACAGGACGAGCACAGTTTCTATCTCCCTTGGAAGTGTACTTGCACACACCCTGTCCCACCTCAATCGCTCTCAGCCTAGTGTACTTGCACACACCCTGTCCCACCTCAACCGCTCTCAGCCTAGTGCACTGggaaccctgtgtgtttgtgttatcaAGAAAACCTTTAGAGGTGCAATGACACTGCATGAGCATTCCTAAATTAGATTTCAGTAAGCACATCCCCAATAGCACTGATGACAATGATAAGGCAGAATAAAGGTTTCTATAGGACAGGATCAAAGGCTTAATGTTTAAGCCTCATCAAGGCCTCTCTTGATTTGGAAACACTATGGATGAATGTGGATCGTGTCTGTGCAGTTTCAACGGAACTCATGAATGATTGCTGGTGAAATTTGTGCCGTGTATCACTATTGCCATTGAAGGGGAATGTACTGTATTGTCTAAATGTTAAAGGAATTGTATCTATGTTTTGTCCTAACCACCCTGCCACAGGCCTCCTGTCAGTTTGTGACACTTATTGTCTCTTTAGTCATTTGTCTGTTACAGAGAAGAGTTAACTTGCAGTGGTGACCTAGATGTGTGGTGGGGCCAACTTCTGCAATAAGAGGCAAGGGCATAAATATGAATCCCAGTCTGTTAGCTTTAGATGAATTGTGTTGTGGTGATGTGTACCAAATATAGTTTTATTGTCATAAAACAAAGTTGTGAGAACCAGGGGTCTTAAACTACAGGCCCGCTGACCAAATGTGTCTCCCAAGCTGATTTAATGTGGCCTGTGGTTGTCTTTAGTAAATGCAGCCCATGGTCATGAAGGGATACAGTGAGATTCTGGCATTTTCCACTTGCCCAGATTCTGATTAACTCGTGGTATGTCTCTACATGCAGTGTGAAGGAAGTTAGATATTTCTGCGGGCCAaggctaactagtgttagcacaaTGATTGGTAGTCTACATGTACGCTAGCATTGCTAGAATCTGTCAGTATCCCTTTAACCTTGTGTAAAAGGAAATCATTGATTAGATTGTAGGACAGTTGGAAGAAATGCTTGGATCTTTAATTCCTGTGTGGAAAATCTGGGCTTAGTTAGAGCATTCCTGATCAAACCTGggctataatacagtatattaatgttGTTGAATATCCAGCTAGATGTCAAGTGTAGTAATATGGTTGTTTAGTAGTCTAGACAATTTCATAGTACCGTATCAACTGAGTAAATTTGGTGGAAATATAGTATGTACAACGGGTATATTTTTGCGGGATTAAGATGACGTAACAGAGGATATATTTAACAAATAAATGGTGGTGAGGTATTAGATTTAACTTCAGGGTGCACTGTTCCATTTCTCCACCAGGTGGCAACATTTATTCAGCTAGAAGTTAGAACAACTATTACACAttttcagtgtgtttgtgtcagagAGTGAATATAGTTGTCAAAACCACCATTCAATATTGTCCCGGCTGACTTTAATATGGCTTCGCCAtgttggtcccagatctgtttgtgcggtCTTGCCAGGCTATAGGTCACCTTTTCCTCAGTCAGTATTGCATGTCTACCAAACCACTCTAGTTGGTAGTTCCCTCTGAATGAAATCAGTGGATATTTATGCAATGAAGACATGAATCTCCTCCTCAGACTGATATGAaacttttgttttttttgtaatgtatccacatagcctggtcccagttctGTGGTCTTGTTTAGGGTGACTGGCCATAGGATTTGGATATCACAGATATGGAACCAGGCTGGGCTCCTCATACATTTTATTGCAAATGTATGTCTATAGACGATCAGATGCACTGCAGCACAGTGTTATGGCCATACAGTAAACACTATTACATTATACCATGGCTTTCAACTGTAAATACCAGGGTTGGAGTCAGTTCCTTCTCAAtcgactgaattgaaatggacttAACCCCAATTCCAGTAGATACTGGTTCATCTGTACTGTACCTACGCACACATAGTAAATGGTTATTCCACTAGTCACAATATTTGTGTGTCCATAATTGAATAAAATACCATATTTCATGAGCAAGTTGGCACCATTGCGCATCTTGGAGTCTGGCCTGGAATTGGGTGCTGTGTAATAACCAATGTAAAGGGTGGGGGTACCacctttctttaaaaaaaaaaaacatgtattggAAATGTTTGTACTGTTTCTATAATGTGTATGATATAAACCAAGTCACAATTTACTATGATCTTAAAGTTATCCAGCAGTAGCTAGCTTTATTTTATCATCGTCATTTAGTTGTTTTCTGATCCTTTTGGTGGGGAGGGCAAGGAAATGTGACTAGAACAAATGAACCTATAGCCCAGCCTTTTTATGTGCTGACAGAAACATGCAAGGCTTGGAATTGAAGAAGTAGAAAAAGCAGTGGTCTTTAGCGTTTGTCATCGGCTTCAGCTTTATATGACGATCCTCTATCAAGATATTTTCATGCAATAACTTTCATATGAAATATCTCTAGGTTAGCTTAGGCATGTCATTGTGTTTATATATATTAAATATCTCTAGGTTAGCTTAGGCATGTCATTGAATTTGGTCTTGGCAGCACATTAAAGGCACAACACTGAAGACAATCTATGATGTCGCTACACTCCATGAATGTTTTCATGTTAATGTGTGTCCATGTCCAGTACCCATGTAGTTGTCAGTATTGGTGCTCACTACTTGTTTTTCCCCTCCATTTTGAGTTGGAATATGTTCTGTCACACCTGGACTATGTAAGACATTTACTAAGCTATAGAATAAAGTGATTGAAATGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104496 lncRNA downstream 50197 84046183 ~ 84047430 (-) True G94762
TU104492 lncRNA downstream 54320 84042636 ~ 84043307 (-) True G94759
TU104428 lncRNA downstream 120812 83976597 ~ 83976815 (-) True G94708
TU104427 lncRNA downstream 122354 83975012 ~ 83975273 (-) True G94707
TU104422 lncRNA downstream 128524 83968827 ~ 83969103 (-) True G94702
TU104456 lncRNA upstream 1326 84111997 ~ 84113710 (-) True G94726
TU104519 lncRNA upstream 4108 84114779 ~ 84115147 (-) True G94783
TU104522 lncRNA upstream 7307 84117978 ~ 84118226 (-) True G94786
TU104526 lncRNA upstream 11121 84121792 ~ 84122010 (-) True G94790
TU104319 lncRNA upstream 40685 84151356 ~ 84152116 (-) True G94609
XM_021614226.2 mRNA downstream 49497 84031554 ~ 84048130 (-) False LOC110530927
LOC110532804 mRNA downstream 130122 83966165 ~ 83967505 (-) True LOC110532804
XM_021614203.2 mRNA downstream 140669 83951057 ~ 83956958 (-) True si:ch211-198a12.6
XM_021614159.2 mRNA downstream 255734 83826949 ~ 83841893 (-) False LOC110530866
XM_036987189.1 mRNA downstream 375713 83713352 ~ 83721914 (-) False LOC110530770
XR_005053182.1 mRNA upstream 12020 84122691 ~ 84126832 (-) True LOC110531009
XM_021614340.2 mRNA upstream 46858 84157529 ~ 84197300 (-) False LOC110531033
XM_021614317.2 mRNA upstream 46858 84157529 ~ 84256948 (-) False LOC110531033
XM_036987414.1 mRNA upstream 46858 84157529 ~ 84256948 (-) False LOC110531033
XM_036987419.1 mRNA upstream 46858 84157529 ~ 84256949 (-) False LOC110531033
TU104323 other downstream 295156 83801332 ~ 83802471 (-) True G94613
TU103830 other downstream 611690 83484056 ~ 83485937 (-) True G94201
TU103453 other downstream 1136305 82949614 ~ 82961322 (-) False LOC100301648
TU104308 other upstream 48152 84158823 ~ 84160764 (-) False LOC110531033
TU104309 other upstream 48152 84158823 ~ 84160764 (-) True LOC110531033
TU104557 other upstream 92816 84203487 ~ 84204464 (-) True G94821
TU104675 other upstream 181089 84291760 ~ 84292623 (-) False LOC110532813
TU104684 other upstream 181089 84291760 ~ 84293583 (-) False LOC110532813

Expression Profile