RNA id: XM_036989962.1


Basic Information

Item Value
RNA id XM_036989962.1
length 5818
RNA type mRNA
GC content 0.51
exon number 16
gene id LOC110532813
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 84291760 ~ 84331700 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tatatctctccctctctctctctctcccagcgaCATGTTTTTTACCCTTCTCTCTAAGTTCTTTCTCTCCACACAACGGACAACAGACTCTCTCTCATTCGTCTGCAGCCTGTAGTAACCCTCCTAGCTAGATGTCGTTCCTCCATCTCTTCAACCGAAAGATGGAACCTGCAGCAAGTAGATGAACCAGCCGGTTCAGCCAACagcccagagggagagagaatccaGTGCTTGTTTGCGTCGGTGtgctgtatatgtgtatatgtgtgtgtgtctgctgagagaagagaggactgcCTTCCAGTGTATGTGTGTCGAAGTGACAATGTTTCTTTGCTTGAGCGGGAGAGTGAGTGTGCGAGTTTCTTGCTCTGAATAGTAGGAGAACGGCAGCTCACTagtgtgtgttcatgtgaatGGATGCATGAGCGGATGCGAAGGAGAGTGTGTTtttccacagtgtgtgtgtgtgtgtcctcctctcTGAGTAGTAGTCGGAGGGCAACTCTCTCCCCCTGGcgggtgtgtgtgtagatggcagtgtgtgtgtgttttgccctGTCCTCCCTTCTCCTGCTCCTGAGCTGTGGTGTAGCGGGAGGATACCCCTTCAGAGCCCCCATAGACCTGGATGTCACCCCCAGGATCACTATGACTACCAGcgGTCTGTTGGGCTGCAGGCGTTTCCAGTCCTCAGTAGTGAACTACAGTACTCTGCTACTAGAGGAGGACATGGGTCTTCTCTACGTGGGGGCCCGAGGGGCCGTGTTCGCTCTCAACGCCACAGACATCTCAGACAACACAGCTCGcactATTGAATGGGAAGCCTCTGAGGAGCAGAAGCAGCAGTGTCTGAGCAAAGGGAAAGACGATAAgACAGAGTGTTATAACCAcatcaggtttctccagagatttAATTCCACTCATCTCTACATGTGTGGGACTCACGCCTTCAAACCTCTTTGTGCGTACATAGATGAGGAGAGTTTTAAAGTGTCGTCTGAGTttgaggagggtagagagaagtgTCCGTATGGACCTGCAACAGGCTACACTGGCCTCATCGTGGACCAGCAGATGTACACGGCGTCTCAGTATGAGTTCCAGTGCTCTCCGGACATCCGACGTAACGACCCCTATCCCATGGTGAGGACAGAGGAGGCACCCACTCGCTGGTTTCATGAGGCTGACTTTGTGGGCAGTGCCCtggtgagggagagtgagggcaGTACTACCGGAGATGACGATAAAATCTACTACTTCTTTACCGAGAAGAGCCAGGAGCAGACCCCATACTACAGCCACATTAGAGTGGCACGTGTTGGACGAGTCTGtaagGGAGATAGAGGAGGTCTGTTGACCCTCCAGAAGAGGTGGACATCATTCCTAAAGGCCACACTGGTGTGTTCGCTGCCAGAATACAACTTACACTTCAACGTGTTGAGGAGTATTTACACGCTGCCGGGACACACACCTCACGACACACTCTTCTACGGTGTCTTCAGTCCCGAGTGgAAGAACGTGAAGATATCAGCAGTGTGCcggttctctctgtctgaggtcCAAAGGGTCTTTGACGGGCCCTACATGGAGAATCAGGACTCTGGAGCCGAGGGGAGCGAGTACACTGGAAAGGTCCCTGACCCACGACCTGGATCATGTATTACAGACCAGTTGAGATCCAGAGGTATAAACTCCTCCACCTCCCTGCCAGACGACATGCTGAACTTTGTGAGGAGACACCCTCTGATGTCCCAGCAGGTCATGTCTACAGAGCAGCGCCCCCTTTTGTTCAGGAGGACAACAGACTACACCCAGCTGGTGGCTCACAGGGTGGAGGGGCTGGACGGGCAGAACTACCATTTACTCTTCATGGGCACAGACGATGGCTGGCTGCACAGAGctgtagaggtcaggggtcatctACACATTATAGAGGAGCTACAGCTGTTTGACCAACCACAGCGTGTGGATAGCCTGGTTATTtcacatacacagaTGAGTGTGTATGTAGGTTCTCCTTCTGGTGTGGTCCAGCTTCCCCTCTCCACCTGCAATAGGTACAATTCTTGTTACGACTGTATCTTCTCCCGGGACCCTTACTGTGGCTGGGATGGACAGGACTGTTTGGATATCACAGCACAGACTGACAGgtctAACCTGACCCAGGACGTCCTGTATGGGAACAGAGGATGTGATAACgAGCTGGTCCAGCACCGGAGCCGGTCTATAATGGTGGGAGATGACGTGCTGCTCCAGTGTGAAATTAGCTCCAATCTGGCAACCCCAGTGTGGACTCTGGACGGGTCAGAGCTGCAGGGCTATGGCCTGGAGTCTGGCTTCAGGGTGGGCACCGACGGCCTCCTGGTCATCGAGTCCCAACCGGAGCAGAGCGGCGAGTACACCTGCCACGCCCTCGAGAACGGTGTCCGAGTTGCTGTGGTTAAGTACTCTGTGACGGTACGTCTAGATatgccacacacccctcccccaccCGTCGACCAATCCCAAGACCATCCCTactaccctcctcctccacccctcaccCCGCTCTTCCACCCTTCGCCCCCCTCCTCTGAGAGACCCCTGCCACCCTCTGCCCCGGcccctctcccccccacctcaGAGCTGCCACCCTCTGCCCCAGCCCCTCCCCCCCCCACCTCGGAGCTGCTCTCCCCCAGGAGCATGGAGGCTATGTACCTGTCCTTGATCACCATCCTAGGAGGTCTGTGTCTGGTTCTCACCGTGGTCCTCCTCTACCTTGGCTTCTGTCTGCGGGGCAGCCACAGGGGGAAGTACTCTCTCCGCGCTGCCGCCGCCGCCGCCGCCTCTGCCAATCACACGGACAGGAAGAGGAAACACAGGAAGCAGCAGCAGAAACGCCACAGTAGCTCCGCCCACCTGGATCTCAAGACCATCTCCAGCCACTGTAATGGGAAAGGGATCTGTAATGGTAACGGCGTCTCCCAACAACCGGGGAACGGTGACACGCACAAAGGGGGCTTCCTCCAGATCGTCCCGAGAGAGGGCCAGCCGTCCCCCAACAAGGACCCACCTCCCCctgccccccctctccccccgccCACTCAGACCCCCCACACCCCCCTCAACCAATCAGAGTGTGACTTGCAAGACTTCCCCAGCCCCAACGGCCTATCGGCGACGTTACCCAGCGTCTTGCGGAGGATGCACGGTAACAGCTACATGTTGTTAAGACAGAGTGAGGCGGAGAGCAGCTCCCCTCTCTGCCGCTCCTTCACTGAGGAACTCAACACGATTCTGGAGAAGAGGAAGCACACGCAGCTGCTGCCAAAACCGAACGAGAGCTCTCTGTAGTAGAGGGAACACCTCTCTGTGTCCGGGAGGTAGCTCCCCCTGTGGTGGGAGGACTGAACTGGACCCACTAATATTgtccatttagcagacgcttttatccaaagcaacgtACATCAGTGAGTGGCCATTGGTGGCCCAAAACAGAGTGCAGTAGAGATCCTTTGAAGATGACCCATGCTGCTCACAGAGTAAAATGTTTTTAAACTAGCCTGGACTGAATTATGAGAGAAGGAGATGTCCTGCTTACGTTTTTTGGACGTAATAAAGGGACACACATCTGGTTGAAGTATCAACTGTGTTTCAAAATAAACTATTTCTGCAAACTATTCGGCCCCCCTATCGCTATCCCCTGTTTGACACCCAAAGCCATGGGTTACAGTGAGTACACAcataagagagacagagagaacctaCCCCAGCTCAGCAGAGCTCAGCAGGCTAGACCTACCCCAGCTCAGCAGAGCTCAGCAGGCTAGACCTACCCCAGCTCAGCAGAGATCAACAGGCTAGACCTAACCCAGCTCCAGTCAATACACCTCAGTCTGGATCAATAAAAGATGAGCCCTGGGGGGGTGATTCAAGGGGCAGGCCTCAAATCTCAGCCCCAGATTAAGGCTCCTCGCTGGGCAGGACACGAGGGACAGGGACCCTGGAAGTCTCAACACAGCCCATGATAacaaggaagaagaggaggaagaagaagaggctcACGGGAATATGAGTTCTTGTGAAGTGTGACAATGACTTGACTTTTTTGGTTTTTAAATGGAGGCAGCTGTCCAAAGGAGAGACCAGACGTGTTTTAAGATGTTGTGCTCTACACCTTTGTAGCTGGTTTCATATTGGACATTGAGggcaaaatgtgtttttattcttagaagtttgtaaattatgtgaaCATTGATTACAATGGTAACACAAAATGTAATAACCAAATTTAAGTAATATTATTAACACATATCAACTCTTAAccccagacagagagagtaatCCAATGAAAATACCCTTTGTACATAATTTTTGTGTAATAGGAAATTGGACACTATTAACCGTTATAGTGAAATGTAAATGCCGTTTCCTTCAGACATTCCCTGGTTATTATCTACTCAACTCAATACAAACACATCAGGAATATGAGAGATTCAACCCCATCTGAGTAGGAGCCAATGGATTACCAGAATCCATACACTGCTGTCTCCTATCCAACCCCAACCTAATGGGTCTGAACTATGGTTGGAAAATAGGTCTGAGCTCTACCACGACATCACAGCTCGGCCACAGAGGACCAGACATCATGTACACCTGAGGCCTGAGAGATGCTGTCTAGTTTTGGGCCTGTCTGTTTGAAACAGATCTTGCTAACTTCAACTCCAGACATTCTCAGATATGGTGTGATGTCTGGTACCGTGACACTAATATCTTGCCCACCGGGAATAGCTTCAAAATGTCTGAATAACTTTGAATAGTCACTGTTTGGAATCAAACACAGTTCCAGTACCATTGGAAGACCAATTATAATCCAGAGGGACTGAGGAAACAGTCTAATCATCCATTCTACAACAAACAGCATGCTCTATCCCATGTTAACCTGAGAACTGGATAGTAATATAGGCCAGGGTACAGTACAGCTACTCTGTAACTGTGCGGTTCATCACAAGAGCAAACTGGGGAAAGGGGCATTTAATGGTTCTGGTCTTCACATCAAATCACACTGCCCTCTCTGTAGTCCTCTCTGTAAGGATAACAAACTATGACAAAATGGATGCTTACTAATCATGATCCCCATCCCAACTGTTGCCAGGTTTTAAAATGAATACACTATTAGTGACACTATGTtctttttaagtaaaaaaaaaatacatgtattgtaATTTTGTTCTAGGTTGCTATTCTATTGccagtgttgttgttttggtgcAATTTGTAAGAGGCATTGATGTGAGTGTCTTGTCCATTAGTGTTGCACTAGTAATCTAATAGCACGGTAGAACAACAGGGGTCTCCAACTCTGGTCCTGGAGACCTACGGGCGATGCAGGAATTCTTCCTACCCGGCACTACCACAGCTGATCCAACTTATCATGGTTCAGAGTCAGACTGAAGACTGTGATGAATTGAGTGTGTTTAGTAGGTACGTTAGTGATTGGTTGGAGCAAAACCCTGCACATGCAGTCACTCTACAGGGCCGGAGTTGGAGAACCTGTTGTTGAAGCATGGTATCTTCGCTAACAACATGATGAACGGAATACACCACCACAACCATAATGTGACAGAGGATAAGACTCTTCAGTCTGGCCCATTCATCTGGGTTGGCTTAGATAAAGTTCCCCACAGCTCGTTAAGCAACTTCCACAGCATTCATCATTCTGTCTTTTGTTCTCGCTCTCCCTATTGCTCGCTCTGTCTCTATCTTCGTCTCTATCTCCGTCTCTATCTccgtctctatctctatctctgtctctatctctatctctgtctct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104640 lncRNA downstream 4104 84287756 ~ 84288189 (-) True G94900
TU104636 lncRNA downstream 5298 84286789 ~ 84286995 (-) True G94896
TU104593 lncRNA downstream 48092 84243960 ~ 84244201 (-) True G94854
TU104592 lncRNA downstream 48556 84243538 ~ 84243737 (-) True G94853
TU104590 lncRNA downstream 50249 84241807 ~ 84242044 (-) True G94851
TU104719 lncRNA upstream 786 84332486 ~ 84332808 (-) True G94950
TU104720 lncRNA upstream 1354 84333054 ~ 84333302 (-) True G94951
TU104733 lncRNA upstream 10485 84342185 ~ 84342448 (-) True G94963
TU104747 lncRNA upstream 17657 84349357 ~ 84349568 (-) True G94977
TU104999 lncRNA upstream 54533 84386233 ~ 84412642 (-) True G95179
XM_036987419.1 mRNA downstream 35344 84157529 ~ 84256949 (-) False LOC110531033
XM_021614317.2 mRNA downstream 35345 84157529 ~ 84256948 (-) False LOC110531033
XM_036987414.1 mRNA downstream 35345 84157529 ~ 84256948 (-) False LOC110531033
XM_021614340.2 mRNA downstream 94993 84157529 ~ 84197300 (-) False LOC110531033
XR_005053182.1 mRNA downstream 165461 84122691 ~ 84126832 (-) True LOC110531009
XM_036987540.1 mRNA upstream 428398 84760098 ~ 84781879 (-) True LOC110522386
XM_036989976.1 mRNA upstream 830050 85161750 ~ 85171855 (-) True LOC118966724
XM_036987580.1 mRNA upstream 840244 85171944 ~ 85207253 (-) False LOC110516660
XM_036987587.1 mRNA upstream 840244 85171944 ~ 85207253 (-) False LOC110516660
XM_036987589.1 mRNA upstream 850891 85182591 ~ 85207262 (-) False LOC110516660
TU104557 other downstream 87829 84203487 ~ 84204464 (-) True G94821
TU104308 other downstream 131529 84158823 ~ 84160764 (-) False LOC110531033
TU104309 other downstream 131529 84158823 ~ 84160764 (-) True LOC110531033
TU104323 other downstream 489822 83801332 ~ 83802471 (-) True G94613
TU103830 other downstream 806356 83484056 ~ 83485937 (-) True G94201
TU105357 other upstream 397164 84728864 ~ 84729423 (-) True G95494
TU105500 other upstream 648033 84979733 ~ 84980272 (-) True G95624
TU105686 other upstream 826042 85157742 ~ 85159313 (-) True G95784
TU105884 other upstream 886693 85218393 ~ 85225150 (-) True LOC110510599
TU105901 other upstream 917509 85249209 ~ 85252317 (-) False LOC110510598

Expression Profile