RNA id: TU104688


Basic Information

Item Value
RNA id TU104688
length 1652
lncRNA type intronic
GC content 0.46
exon number 2
gene id LOC110532813
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 84291760 ~ 84331700 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gggtggctactttgaagaatctcaaatataaaatatcattacatttgttttaacacttttttggttactacatgatttcatatgtgttatttcatagtttagacctcttcactattattctacaacatagaaaatagtcaaaatgaagaaaaacccttgaatgaataggtgtgtccaagcttttgactggtactgtacattcagTCACAGTGGGGCCGACGTCGTTGATGCGctcattgatgaagccagtgacggaGGTGTTATACTCCTCAATGGCATTGGATGAATCCcgtaacatattccagtctgtgctagcaaaacagtccagtagagtagcatccgcgtcatctgaccacttccgtattgagtgagtcactggtaattcctgttttagttttagcttgtaagcaggaatcaggaggatataattatggtcagatttgccaaatggagggcgagggagagctttgtatgcgtctctgtgtgtggagtaaaggcaGTCTATTTTTTTCCTCTGTTTGCACATGtggcatgctggtagaaatgagttaaaactgatttaagtttccctacattaaagtccctggcaaCTAGGAGCGcctcctctggatgagcattttcttgtttgcttatggccttatacagctcattgagtgtggtcttagtgccagcatcggtctgtggtggtaaatagacggctacgaataatatagatgagaattctcttggtagatagtgtggtctacagcttatcataaggtactctacctcgccttaccagacgtagctgccctgtcctgcctatgtacggaaaacccagccagctctatattgtcggtgttgtcgttcagccacgactcagtgaaacataagatattacagtttttaatgtcccgttggcagGATATTCTTAATCGTATatcatccagtttattttccaatgattgcacgttggccaatagtactGATGATAGTGGTGGTTTACCCACTCGCCTCCAAATTCTCACAAGGCGCCCCAACCTAATCGTTTCTTCACAcgaatgatggggatttgggcctggtcttgagaatgcagtatatcctttgcgtcggactcattaaagaaaagtTCTTTGTCtagttcaaggtgagtaatcgctgttctgatgtccagaagctcctctcggtcataagagactgtaGCAGCTCCATtatttacaaacaatgcaaaaaaactaacaaaatagcacagttttTTAGGAGCCTGTAAGAAGGCAGCCCACCCCTCCAGCGCCATTCTTAACATACTAAAGAACGGTCGCTAAATGTGTTGTTGGAGCAGgtgtcgatactgataggatcgaaagaaagGCAGCGCTgcgatcagctttctccatttaAATCTTTCCTTTACATTATAGTTATTCAACAATACTGACGACGGATCAGCTCCTGGAGAGATATTACCACCTACGGTTGCAAATATTGAGgcggcttattctaatgcttacccaataaaaatgcacaaaattATCAATTTGGCACATTATTGCGCACATGTAAGGCTACACATCATGGCAGACATGGAGATAAATTatagacagtagcctacaagcaGCAAAATAGAACTCAATATGATTGAAAACACCTGTAGCCTTTTTTTATGAATTCag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104669 lncRNA downstream 1873 84291760 ~ 84292623 (-) False LOC110532813
TU104689 lncRNA downstream 1873 84291760 ~ 84292623 (-) False LOC110532813
TU104640 lncRNA downstream 6307 84287756 ~ 84288189 (-) True G94900
TU104636 lncRNA downstream 7501 84286789 ~ 84286995 (-) True G94896
TU104593 lncRNA downstream 50295 84243960 ~ 84244201 (-) True G94854
TU104677 lncRNA upstream 704 84296936 ~ 84299386 (-) False LOC110532813
TU104679 lncRNA upstream 704 84296936 ~ 84298471 (-) False LOC110532813
TU104687 lncRNA upstream 2470 84298702 ~ 84301245 (-) False LOC110532813
TU104695 lncRNA upstream 5085 84301317 ~ 84301682 (-) False LOC110532813
TU104696 lncRNA upstream 5085 84301317 ~ 84301579 (-) True LOC110532813
XM_036987419.1 mRNA downstream 37547 84157529 ~ 84256949 (-) False LOC110531033
XM_021614317.2 mRNA downstream 37548 84157529 ~ 84256948 (-) False LOC110531033
XM_036987414.1 mRNA downstream 37548 84157529 ~ 84256948 (-) False LOC110531033
XM_021614340.2 mRNA downstream 97196 84157529 ~ 84197300 (-) False LOC110531033
XR_005053182.1 mRNA downstream 167664 84122691 ~ 84126832 (-) True LOC110531009
XM_036987540.1 mRNA upstream 463866 84760098 ~ 84781879 (-) True LOC110522386
XM_036989976.1 mRNA upstream 865518 85161750 ~ 85171855 (-) True LOC118966724
XM_036987580.1 mRNA upstream 875712 85171944 ~ 85207253 (-) False LOC110516660
XM_036987587.1 mRNA upstream 875712 85171944 ~ 85207253 (-) False LOC110516660
XM_036987589.1 mRNA upstream 886359 85182591 ~ 85207262 (-) False LOC110516660
TU104684 other downstream 913 84291760 ~ 84293583 (-) False LOC110532813
TU104675 other downstream 1873 84291760 ~ 84292623 (-) False LOC110532813
TU104557 other downstream 90032 84203487 ~ 84204464 (-) True G94821
TU104308 other downstream 133732 84158823 ~ 84160764 (-) False LOC110531033
TU105357 other upstream 432632 84728864 ~ 84729423 (-) True G95494
TU105500 other upstream 683501 84979733 ~ 84980272 (-) True G95624
TU105686 other upstream 861510 85157742 ~ 85159313 (-) True G95784
TU105884 other upstream 922161 85218393 ~ 85225150 (-) True LOC110510599
TU105901 other upstream 952977 85249209 ~ 85252317 (-) False LOC110510598

Expression Profile