RNA id: TU104679


Basic Information

Item Value
RNA id TU104679
length 1463
lncRNA type intronic
GC content 0.45
exon number 3
gene id LOC110532813
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 84291760 ~ 84331700 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGATTTCAGTGAAGCAGAGTAAAAACATCAAAGGCTGCAGGTACAGGGAACGGAGAGGAGATGAGACTAATGTACACCACTCTTTGAATCTGATgctctttctccatttctctctctttctcactctcttgcCTTCTTTACTCATAATGACACATTTCATTTTTCTGCATcttttcttcctcctccctctccctcgtctcctgcctccctctccctcgtctcctgcctccctctccctcgtctcctgcctccctgctctctcctccctcacctcgTGCTGCCTCCCTGTTCTCTTGCCTGCTAGGGTGAATTTCCATTGAACTATTTTGTGTGGATAAAAACAGCTGGACATAATGACGTCACACCTAAAACAACTAGTGTTGAATACAAATGCAGTGGTTGAAGTGTTTCCATCACCCATTTAGACAAATTGTGCATTAATACATTGGCCACAGCCTGTATGCCCTCCCACcttcactatatatacaaaagtatgtggacaccccttcaaaatagTGGATTCAGCTATGTCAGCCAcatctgttgctgacaggtgtataaagttgagtacacagccatgcaatctccatagacaaacagtggcagtataatggccttactgtagagctcagtgacttccaacgtggcacagtcataggatgccacctttccaacaagtccgtttgtcaaatttctaccctgctaaAGCTGCCGCGGCcaagtaagtgctgttattgtgaagtggaaaagtctaggagcaataacagctcagctgcaaagtggtaggccacgcaTGCTCCCAAAacgactaaactgcttggagtaaccctgaattgtaaactgtcatggtcaaaacatattgatacaacagtagctaggatggggagaagtctgtccataataaagcgctgctctgcctttttaacaacactatcaacaaggcaggtcctacaggtcctagttttgtcgcacctggaccattgttcagtcgtgtggtcaggtgccacaaagagggacttaggaaaattacaattggctcagaacacgGCACTACTGCTGGACCTTaaaagtacacggagagctaacattaaggatatgcatgtcaatctctcatggctcaaagtggaagagagattgacttcctcactacttgtttttgtaagaagtgttgacattgACTGTTTAAACTACTAGTACACAgattggacacccatgcataccccacaagacatgccaccagaggtctcttcacaatcccaagtccagaacagactatgggaggcatacagccctacatagagccatgactacatggaactttatgccacatcaggtaactggtacaagcagtaaaatcagatttaaaaaacaggtaaaaatacacctgattatggaacagcggggactgtgaagagacacacacaaaggtacagacacacgcatatgCACACAAGCGCTAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104688 lncRNA downstream 704 84294496 ~ 84296232 (-) False LOC110532813
TU104678 lncRNA downstream 1390 84294496 ~ 84295546 (-) False LOC110532813
TU104669 lncRNA downstream 4313 84291760 ~ 84292623 (-) False LOC110532813
TU104689 lncRNA downstream 4313 84291760 ~ 84292623 (-) False LOC110532813
TU104640 lncRNA downstream 8747 84287756 ~ 84288189 (-) True G94900
TU104687 lncRNA upstream 231 84298702 ~ 84301245 (-) False LOC110532813
TU104695 lncRNA upstream 2846 84301317 ~ 84301682 (-) False LOC110532813
TU104696 lncRNA upstream 2846 84301317 ~ 84301579 (-) True LOC110532813
TU104716 lncRNA upstream 31851 84330322 ~ 84331097 (-) True G94947
TU104719 lncRNA upstream 34015 84332486 ~ 84332808 (-) True G94950
XM_036987419.1 mRNA downstream 39987 84157529 ~ 84256949 (-) False LOC110531033
XM_021614317.2 mRNA downstream 39988 84157529 ~ 84256948 (-) False LOC110531033
XM_036987414.1 mRNA downstream 39988 84157529 ~ 84256948 (-) False LOC110531033
XM_021614340.2 mRNA downstream 99636 84157529 ~ 84197300 (-) False LOC110531033
XR_005053182.1 mRNA downstream 170104 84122691 ~ 84126832 (-) True LOC110531009
XM_036987540.1 mRNA upstream 461627 84760098 ~ 84781879 (-) True LOC110522386
XM_036989976.1 mRNA upstream 863279 85161750 ~ 85171855 (-) True LOC118966724
XM_036987580.1 mRNA upstream 873473 85171944 ~ 85207253 (-) False LOC110516660
XM_036987587.1 mRNA upstream 873473 85171944 ~ 85207253 (-) False LOC110516660
XM_036987589.1 mRNA upstream 884120 85182591 ~ 85207262 (-) False LOC110516660
TU104684 other downstream 3353 84291760 ~ 84293583 (-) False LOC110532813
TU104675 other downstream 4313 84291760 ~ 84292623 (-) False LOC110532813
TU104557 other downstream 92472 84203487 ~ 84204464 (-) True G94821
TU104308 other downstream 136172 84158823 ~ 84160764 (-) False LOC110531033
TU105357 other upstream 430393 84728864 ~ 84729423 (-) True G95494
TU105500 other upstream 681262 84979733 ~ 84980272 (-) True G95624
TU105686 other upstream 859271 85157742 ~ 85159313 (-) True G95784
TU105884 other upstream 919922 85218393 ~ 85225150 (-) True LOC110510599
TU105901 other upstream 950738 85249209 ~ 85252317 (-) False LOC110510598

Expression Profile