RNA id: XM_036987540.1


Basic Information

Item Value
RNA id XM_036987540.1
length 1400
RNA type mRNA
GC content 0.45
exon number 5
gene id LOC110522386
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 84760098 ~ 84781879 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cacacacacatacacgacaCACGCTCGAGCCTCGCTAGTAAGTTCCCGCCCTCCCGCGAAGCTCGAGCCGCGCAGTCCCAAGAGCAGAAGATTTCAGCACGGGACAGATCCTGCACCGTCTCATGGCAACATGTCGACTGAGttCCATAACCTACAGGAGTTGAGACACAGTGTGTCTGTAGCCACCAAGGTGTTCATCCAGAGAGACTACAGCCAAGGGACTACCTGTCGCTTCCAGACTAAGTTCCCCTCTGAGCTGGACAGCaggattgagcgGACCCTGTTGGAAGACACAGTGAAGACGTTGAACAGCTACTATGCAGAGGCAGAGAAGATGGGAGGCCAGTCCTACATGGAGGGATGTCTGGCGTGCGCTACAGCCTACCTCATCTTCCTCTGTATGGAGACACGTTATGAGAAgATGTTGAAGAAGATCTCAGGGTACATCCAGGAGCAGAATGAGAAGATCTACGCCCCCAGAGGTCTATTACTGACAGACCCTATAGAGAGAGGCATGAGAGTCATCGAGGTGAGTGTATTTGAGGACCGCGGCTCGAGCGGCTCTAGCCACAGCAGCAGTGTGTCGTCTGGTGGCAGCAGCCAGCGGTGACTGGAGGATCAGCACCAGGGATATGGGTACCACCACAGAAGCGGCAGATCTTTCACCAACATCCGCATGCTGAAACAAGAGAGCACCCGCTTCTGATTATAGATGTATATCAATGTAATCAATATACTATCTCTAGTTTAGAGTATAGATGCATATCTaatcaatatactgtctctagttCTGAGTATAGATGCATATGTCATACAGGAAGTAAACATTGAttgtatatactatctgtagatGTGTGCCAGGGAGACTAAAGAGAGAGGCCAGGATGAGGCTACTGAAGAACAGGAGCAGACATGGAAACACACATCTTTGAGTATCTGATGGTTAGACTCATGTTTCTGCAGACTATTCATTCAGCCGACTGTCATTCTGCTGTGTCACCATTCCCTGTGTTTCCATGACTTCAATTGGAACTATTATGCCATAGccaatacagatgtaggatcttaatttgatcaacctgttccaggagaactttcctgctaagcaggaaatgtaaaatgtgtagtgtatttgaggtttaaaaaggcttctgaagtctGTAATTTCCAAAATGTTAACGTGTTAATTTCCACTTAAAAAATGgatcaacccctacaaatatgtgaattaattataatccacaaagtaattcacatttcctgttgctgcaggattattttcctgatgTAGCAAACTGGATCAAATGGAATATTTTGAAGTAGtagtatttgatttattttatttcacctttattttaccaggtaggccagttgagaacaagttctcatttacaactgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105348 lncRNA downstream 1615 84757244 ~ 84758483 (-) True G95485
TU105349 lncRNA downstream 4292 84755616 ~ 84755806 (-) True G95486
TU105346 lncRNA downstream 8508 84750143 ~ 84751590 (-) True G95483
TU105366 lncRNA downstream 19807 84740068 ~ 84740291 (-) True G95502
TU105365 lncRNA downstream 20107 84739731 ~ 84739991 (-) True G95501
TU105401 lncRNA upstream 33258 84815137 ~ 84815399 (-) True G95535
TU105406 lncRNA upstream 41766 84823645 ~ 84823875 (-) True G95540
TU105414 lncRNA upstream 57929 84839808 ~ 84840125 (-) True G95548
TU105399 lncRNA upstream 70118 84851997 ~ 84853771 (-) True G95533
TU105433 lncRNA upstream 90549 84872428 ~ 84873769 (-) True G95565
XM_036989962.1 mRNA downstream 428398 84292293 ~ 84331700 (-) False LOC110532813
XM_036987419.1 mRNA downstream 503149 84157529 ~ 84256949 (-) False LOC110531033
XM_021614317.2 mRNA downstream 503150 84157529 ~ 84256948 (-) False LOC110531033
XM_036987414.1 mRNA downstream 503150 84157529 ~ 84256948 (-) False LOC110531033
XM_021614340.2 mRNA downstream 562798 84157529 ~ 84197300 (-) False LOC110531033
XM_036989976.1 mRNA upstream 379871 85161750 ~ 85171855 (-) True LOC118966724
XM_036987580.1 mRNA upstream 390065 85171944 ~ 85207253 (-) False LOC110516660
XM_036987587.1 mRNA upstream 390065 85171944 ~ 85207253 (-) False LOC110516660
XM_036987589.1 mRNA upstream 400712 85182591 ~ 85207262 (-) False LOC110516660
XM_036987592.1 mRNA upstream 404997 85186876 ~ 85207269 (-) True LOC110516660
TU105357 other downstream 30675 84728864 ~ 84729423 (-) True G95494
TU104684 other downstream 466515 84291760 ~ 84293583 (-) False LOC110532813
TU104675 other downstream 467475 84291760 ~ 84292623 (-) False LOC110532813
TU104557 other downstream 555634 84203487 ~ 84204464 (-) True G94821
TU104308 other downstream 599334 84158823 ~ 84160764 (-) False LOC110531033
TU105500 other upstream 197854 84979733 ~ 84980272 (-) True G95624
TU105686 other upstream 375863 85157742 ~ 85159313 (-) True G95784
TU105884 other upstream 436514 85218393 ~ 85225150 (-) True LOC110510599
TU105901 other upstream 467330 85249209 ~ 85252317 (-) False LOC110510598
TU105902 other upstream 476517 85258396 ~ 85260532 (-) True LOC110510598

Expression Profile