RNA id: XM_036987631.1


Basic Information

Item Value
RNA id XM_036987631.1
length 3723
RNA type mRNA
GC content 0.48
exon number 15
gene id LOC110510599
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 85213382 ~ 85244441 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCTGCAGCGTCTGGCTCAGCGGAGGAGCATCTTGAAAGTTTTTCAAAATCACGCCAATGTTGTTACTTTTTCACTGTCCTTCAGAACTCTCAAACTACGTTCCGTTATTTTAGGGATCATTTGTCTCATTTCTATGTCTGGATAACCTCAACAACATCGTTTTGTTTAAGATATTCAGGTGTTTGCTGGTTTCATCTGTCGACAGCAGAAAATGAACGACACATTCCCCCTAACCAGAAAGAAGAAGTGAAGGAGTGGGAAGATcgttggagagaagagagagagagagagactgaagagggTCTAAACTGAAGGAGTGGGGAGATcgttggagagaagagagagagagagagagagactgaagagggTCTAAACTGAAGGAGTGGGGAGATcgttggagaagagagagagagagagactgaagagggTCTAAACTGAAGGAGTGGGGAGAtcgttggagaggagagagagagagaaactgaagaGGGTCTAAACTGAAGGAGTGGGGAGATcgttggagagaagagagagagagagagactgaagagggTCTAAACTGAAGGAGTGGGGAGATcgttggagagaagagagagagagcgactgaaGAGGGTCTAAACTGAAGGAGTGACCAGAGAGGATACTTATTGCAGACACCATGTCTGTCTCCACCACCAAACAGGAGAGAACCCTGTGTGTTCTGCTCCCTAATAAAGAACAGctggacatcactgtgggggtcaagTCCACAGGGCAGGATGTGTTCAATCAGGTGTCTGAGCTCCTTGGAATAAAAGAGCTGCACTTCTTTGGCCTGACAGTGGTGAAGGACAATGAGCACATCTTTCTGGACATGGAAGATAAGCTGACCAAGTATTTCCCTAAGGAATGGAAGCAAGATTCAGGGAAGGGGTTACAGAAGAGATCCCTCCCCCTGGTACTCTGCCTCAAGGTGCAGTACTATGTGGAGAACGGCAGGCTCATCTGTGAGCGGAAGGCGAGGCGTCTGTACTTCTCTGACCTGAGGGAGAGGGTGTTGCGTTCTGAGTGTCGTCAGCAGGAGGAGGTGTACTTCCAGCTGGCTGGGTATGCTCTTCAAGCTGACCTGGAGGACCATCCCCTGCCTGGGAAGAACCAGGGAGGTACCCGCTACTTCCAACCCAAAGAGTACTTCCCTCCCTGGaTTGTGGCGAAGCGTGGGGTGGACTACCTGCTCTGTCACGGTCCCAAGGTACACAAGGAGCTATGGGGCATGACGCCACGTGATGCGGTACTCCACTTCATCAAAGAGGCCTGTCGTCTCGAGGACGTCCCCGTCACCTTCTACAGGCTACAGAAGGacaagaaagaagagagaggcacAGCTCTGCTGGGGCTGACCCTCAGAGGAATGCAGCtttatcagGAGGCGGACAACATCCGCCAGCTTCTCTATGATTTCCCCTGGTCCAACGTGGGACGACTCACCTTCCTGGGAAAGAAATTTGAGATCCAGCCAGATGGTTTGCCGTCGGCCAGGAAGCTGGTCTACTACACTGGGTCTCCGTTTCGCTCGCGCCACCTCCTCCTGCACCTCAGCAACAGCCACCGACTCTACCTCAGTCTCCAGCCTGCCCTCAAACACCTCCGACAGCTGGAGGACAGCGAGGAGAAGAAGCGCTACAGGGAGTCGTACATCAGTGATGACCTGGATCTAGACCATCCAGGGGGCAGCGAGGGGGGCAGCCCCGGCCTGTCCCGACACTCTACCTCCAGCTCGGGCATCGAGGCAGACCGCGATGCGACACGGCAACACAGCAGCATCTCCATGGAGATGGCGTCCATGGAGGAGGAGACTGAGctgaggaagaggatggagaAGTGTTTCAGTTCGGCAGCGAGTCACGGGAGTTCTCACACTTCGGGCGTGGACACGGGCAGCAAAGCACGCACTGATGAAGAGGAGTGGCAGGAGGAAGAGACCCAGCAGGCCAGTCTGGACAGTCCAGGAGAGGTTTCCGTGGACGACCCAGAGGAAATGCTGAGATTGGCTGAGCTGATGGAGGGCGTGTCGGTTGATTGTCCCGTGCTCACCTCGGAGACTCATTGTGAAGGATCAAAGGGGGATCAGGTAGACAGAGATGAAGACCTGGTGACACTACGCAGCAAAGATACCCTGGGACAGATCCTGAAGTCAAGATCCCATTGCGTGGACCGCCACAGCCAGAGCCTGGATGACGTTCGCCTCTTCCCCCCTCCCGCCCCCCTCGGCACGACTCTACCCCCTGACTCCTCCCACAGCTACACCTTTGGCCTGCCCCTCCCGGACTCCCAGAGTGATGCTAAGAGCCCCCCAGGGTGTAACAACGGAGGCTACTACCTCCCCCTCCACTGCCCGGCTAAGGGCACCTTCTATGGACACAGGTCTATGAACTGCCTGTCTCTGGATCTACTGGGAGACGAACAGCTGTTGGAGTTCATACTGTAGAACAACACAGAGGACCAATGTCCTTCTTCAAGCATATTCTCTACCCACATCTCCCTCCAATGAAACTGTAGGATACAGGGGAGTGGCTGCATGCAGCTAGAGTTCTAACTGTAGAACAACACAGAGGACCAATGTCCTTCTTCAAGCCTATTCTCTACCCACATCCCCCTCCAATGAAACTGTAGGATACAGGGGAGTGGCTGCATGCAGCTAGAGTTCTAACTGTAGAACGTAATGTTTTTACACTACCGGGCTGAACTGTACTGGCCTGGTCACATCAAGGACCATGGAGGGCCCTCTTCATGCCTGTGTTCTACTGTATGACTCAGATACAGGGGAGAGGCTGCACAGAGATGTTGGAGGACTTTATGCACCTTTTTAAGAGGATTGATTGGTATTGGTAGCATTCATTGTGAAACGGAAGGAGGTCATCACCTTCAATAATCATCCCAATACAGACCATACTCTACATATTTATTGAACATGTTTGACActatttttgttttaccttttgtAGATACTTTGTACATAATTGTCTTATATTTTCAACTATTTTACTATATATTTTTACTTTGAGGTACTAACACATTGTAACCATTTCAATAACTGTAAATATAGGGGTGAACATTGCATTTCTTCAGTTTCTTAATTGGTGTTTGTGTGAATCGTGGTTTGAACCAGGAGTATCTCTAGAAGTACTTTATGGTCTATTGTGAAGAGCAAAGGACTTTACTGCACGTTGACATCCTGTGTAAATTTAAATGTATCATCATTACATTATTAAAAATAACAAACAGCATTTTTAATCTTATGTTTTGCTTTTGTTTCCCTTGTATGtcagtttttaaaaaatatatatatatttttttccattttccaattaagaacattcaaaacaaaagtgaGAAGATATTAGACAACGATAGTTTGTCTATAAAAACAAAATTCTCTGAAATGAACATCACATATACAAGATTGTATTTTGTCGCGATAATGTTTGATGATATTACAAGTCTGCCATAGCTGCCACAATGTTtgtcctttttttttaaatacaaaactCAAAAAATGAAATTGTAAAAAACAGTTCAACATGCTTGCACTGCTTGTCAATAGTACATttctattaattatatttctaaATGTTTTCTTTCTAATGTTTTTACTTTCTCTCTAAGTAGAGCAGCACATTATGAGCTATTTCTGTGTCTTCATGCATACACTGGAATGATTATATAAATAAAGTAATGACAAAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105881 lncRNA downstream 318 85212864 ~ 85213064 (-) True G95965
TU105710 lncRNA downstream 1624 85211546 ~ 85211758 (-) True G95808
TU105705 lncRNA downstream 16047 85197124 ~ 85197335 (-) True G95803
TU105704 lncRNA downstream 18574 85194345 ~ 85194808 (-) True G95802
TU105698 lncRNA downstream 32105 85179997 ~ 85181277 (-) True G95796
TU105899 lncRNA upstream 2900 85247340 ~ 85248832 (-) False LOC110510598
TU105926 lncRNA upstream 102418 85346858 ~ 85351766 (-) False G96002
TU105928 lncRNA upstream 102418 85346858 ~ 85351766 (-) False G96002
TU106016 lncRNA upstream 207992 85452432 ~ 85456627 (-) True G96062
TU106212 lncRNA upstream 441968 85686408 ~ 85686727 (-) True G96234
XM_036987592.1 mRNA downstream 6113 85186876 ~ 85207269 (-) True LOC110516660
XM_036987589.1 mRNA downstream 6120 85182591 ~ 85207262 (-) False LOC110516660
XM_036987580.1 mRNA downstream 6129 85171944 ~ 85207253 (-) False LOC110516660
XM_036987587.1 mRNA downstream 6129 85171944 ~ 85207253 (-) False LOC110516660
XM_036989976.1 mRNA downstream 41527 85161750 ~ 85171855 (-) True LOC118966724
XM_036987635.1 mRNA upstream 2898 85247338 ~ 85299640 (-) False LOC110510598
XM_036987640.1 mRNA upstream 2898 85247338 ~ 85299640 (-) False LOC110510598
XM_036987644.1 mRNA upstream 2898 85247338 ~ 85299641 (-) False LOC110510598
XM_036987651.1 mRNA upstream 113782 85358222 ~ 85624715 (-) False LOC110519057
XM_036987654.1 mRNA upstream 113782 85358222 ~ 85624716 (-) False LOC110519057
TU105686 other downstream 54069 85157742 ~ 85159313 (-) True G95784
TU105500 other downstream 233110 84979733 ~ 84980272 (-) True G95624
TU105357 other downstream 483959 84728864 ~ 84729423 (-) True G95494
TU104684 other downstream 919799 84291760 ~ 84293583 (-) False LOC110532813
TU104675 other downstream 920759 84291760 ~ 84292623 (-) False LOC110532813
TU105901 other upstream 4769 85249209 ~ 85252317 (-) False LOC110510598
TU105902 other upstream 13956 85258396 ~ 85260532 (-) True LOC110510598
TU105927 other upstream 102418 85346858 ~ 85351766 (-) False G96002
TU105929 other upstream 102418 85346858 ~ 85351766 (-) True G96002
TU107204 other upstream 901569 86146009 ~ 86151339 (-) False G97047

Expression Profile