RNA id: XM_036987663.1


Basic Information

Item Value
RNA id XM_036987663.1
length 4277
RNA type mRNA
GC content 0.54
exon number 53
gene id LOC110519057
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 85358222 ~ 85624716 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTCCAGTAGCCTAATGAGAGAGTGGGAGGGTCAGTCAGTCGGTGCGACTAATAAGGACACGAGGATCTAGTAAGAGATCCCATTCTCACTTTTATGTCTTTACAAGTCTACTTTGGAATAGCAACCGACTATTTTTCCAAACATGCGTTCATAAACGTTCATGGATTAATGCGTTTTTATGCTGGAGTAAACTTTCTCACCAATTGTTTTGAAGAAGTTTTTTCTCTTGCATCAGAGAAGACATGAGTTGCTTGTTAAAATGGACAGCTTTCCTCTGGATCGTACATATCATTCCCTGCACTGTTGGAATGGCATTGAACGAAAGAATAGACAACTCTAGATGTCCTCCATTGAAAGTAGACAAGGACCTGTTTTCCTACAGTTTAAATGGTCCACAGCCAGAATTCACCGGTTTTGATCTGACAGAAAAGTTTCTCCTGAGAAAGGGGGCAGTGACAGAGGAGCGGCCATCATTCCGGCTGGGGAGCAGCCCCCTCATCAAGCCAACCGAATTGGTGTTCCCCAATGGTCTGTCCAGTGAATACTCTCTAGTCACCACCTTCCGGCTGAGGAAAACCACGAAGAAAGACCGCTGGTATCTGTGGCAGATATTCGACCAGACGGGAGGTACCCAGGTGTCTGTAGTGTTGGACGGAGCTAAACGAGCAGTGGAGTTCTCAGCCCGGGGCCTTCTGAAGAACAGCCTCCACTACACCTTTAAGAGCCGAGACCTGCACACCCTGTTTGACCGCCAATGGCACAAGCTGGGTGTGGCGGTCCAGAGCAGCATCGTCTCCGTTTACATGGACTGTAAACTAATAGAGAGGAGGCTGACAGACGAGAAGGATGAAATCGACCCCAGCGGATATACGCTGATTACAACCCGGGTGGAGGATGGACGGCCTGTAGATATCGAACTGCAACAAATCCTGATCTACTGTGACCCATACCTGGCTGAGATGGAGAACTGCTGTGAGCAGGCAGGATCTACGTGTGAGCCTAGCAGGGAGggccctggtgctggaggggtgACTCCCAATCCCTTGAATACAGATGGAGCAGGCCAGCTCCCCCGGATGCTCTCCCAGCCCGTCCAGCCAGCTCGGGTCCAGCGGGTCCAGCATTCCAGCAGTGACAGATGTCAATGCTCAGCAGAGAAGGGTGATCAAGGTCTACCAGGCTTGGCAGGACTTCCAGGACAGAAAGGCGATCAAGGAGACAAGGGAGAGACCAGGAAAGATGGGTTCCCTGGAAACTCAAGCCAGAagGGTGACCAGGGTGTTTCTGGCTCACCAGGTCTGGATGGTATTCCTGGACAGAAGGGGGAGGCAGGATCAAACGGGTCTAAGGGGATCGATGGAGCAAcgGGTGAGAAGGGACCAGCTGGGGAGCCTGGTGCGGAGGGGAAACCTGGGATAAATGGTTTGAAAGGAGACTCAGGTCCTATTGGCCCCAAAGGTGATCAAGGCGATACGGGTCTTCAAGGTCTGCCTGGTCTAAGTGTGGAGAAAGAGGGACTCAAGGGAGATCAGGGATCCCCTGGGTTGCCAGGTCAGACGGGGGCTCTGGGCAAAGAGGGAAAAAGGGGTCGCCGAGGGAAGACGGGGGAACCTGGACCCAGAGGCCTGCCTGGGGTGAAGGGTGACTCTGGAATCCCAGGAGACAAAGGAGATCAAGGTGATCCGGGTCAGCCAGGTGGAGACGGGGCCTCTGGGATGAAAGGACAGAAGGGGGAAGAAGGCCTGAGAGGACCACCAGGACCGGAAATGACAGCTCATGGACTGAGACATCTGTCTGGCTCTgAGGCTGAATCAGGAGAGAAGGGCCAGAAAGGAGAAATGGGTGATCCAGGACAAAGAGGACTCCAAGGACCACATGGTTTCAAGGGAAGCTTAGGACTACCAGGTCCAAAGGGAGAGCCCGGCCCAGAGGGTAAAGAAGGTCCTCGTGGACTCATCGGACTCCCAGGGATTGCAGGAGAGATGGGATCGTCGGGGGACCAGGGAATACCTGGTAGAGACGGTCTGAAAGGAAACAAGgGGGACTCTGGAGATGTGATGGGACCACAGGGCCTGCCTGGACCCAAGGGAGAGCCTGGAGAGCCAGTAGCTGAACAGCTGGGAGAGGGGATGACATCTGGACCCAGAGGATCACGAGGGCCAAAGgGTGAGCGTGGCGTCCCTGGTGTACCAGGAGACCTAGGGGAGAAAGGAGAGCCTGGTCTGGGCGTTGAAGGACCTCCTGGCCCcatgggacagagaggagagagaggatttgAGGGCCCTCGTGGACCCTCTGGATTCTCAGGCCCTGCTGGGACCCcggggagagagGGATCCCCTGGTCGAGAAGGTCCCCCAGGTCCCCCTGGCCCACCGGGTCAACCAACTGCCTTGCCAATTGTCGGAGATATGAGCTCTTTACTCAAGAATGCCTGCACCGTGTGCCAGACCAGAGTGCCAGGTCTGCCTGGGCAGAAGGGCGAGCAGGGAACCCATGGAGCGACAGGAGTGCAAGGCATGGTGGGAGAAAAGGGGGATCCAGGAGTGCGAGGACCTCTCGGTAATCCAGGGAAAGAAGGTCCAAAGgggatgaaaggagagagaggattcCCTGGGCCTAGTGGAGACAAAGGAGACGAGGGCTCTCCTGGAGTTCCAGGCATTCTGGGTACAACAGGCCGTACTGGAGCCCCTGGTGTCATGGGCAGACCTGGGCCAATGGGTCAGCCTGGAACAAAGGGAGATCGGgGAAGTGAAGGATCCCCTGGAAGGCCAGGACTACCAGGCCCCCCAggtGTCCCCTATGTGGAGGGCAATGGGATGAGCAGTCTGTACAAACTGCAGAGTGGAGGAGCCATCTCAGGACCCCCTGGAGCATCAGGTGCACCAGGGCCCAAAGGAGACGAGGGAAGAGTGGGAGATCCCGGATCCATTGGTTTACCAGGACTAGAAGGACTACCTGGAGCCAAGggTGATCTGGGGATGCCTGGAGCCCCTGGAATACCTGGGCCTTCAGGGAAACCTGGAGCTCGCGGTGATTCGGGGATCCCTGGGGAACCGGGTGAGAGGGGCCCGCTGGGGGAGACAGGATTCCCAGGTCCTGAGGGACCCCAAGGTGCTCCTGGGAGGCCCGGGAAAGATGGACTTCCTGGGTACGAGGGAGCCACAGGTAGACTAGGAGACAGAGGATCCAAGGGAGAACGGGGGGACCCAGGGATACCTGGAGCGAGGGGAGtccaaggagagaggggaaggacagGAGACCCAGGAATAGTGGGACCTATCGGGCCCCAAGGCCACCGAGGGGACCCTGGTCCCCCAGGTCCCATAGCATCACCAAGCCCTCTGaaTGATGCCAATTCCATGGAGGAAATTAAAATGTTTATCCGGAGTGAAGTATTGCGGTTGTTTGAAGAGAGACTATCAAGCCATGCCATGCAGAAGACGCCGGCGGCCATTTTAGCGGCGCAGGTTCGACAGGGTTCTCCCGGTCCCCCTGGCAACGACGGATCCCCAGGGCTTCCAGGGGAAGAAGGCCCCCCCGGCCCTCAAGACAAATGAAGAATTGGGAGGAGAATAAGAGAAAGTAATATCAGTTTGGACAGAAAAGAGCACCACGATTGATACCTCACTCCCCTCAACTCCACGAAAAACAAAGCTCTGGTAAAACGTAAAAGgaaaggagtgagggagagagggtggagagtggACATCCTTTGTCAAACCCTGGGCAACTCTCTGACTGCTCAGCTCACACAAACAACCTCCTTCATCAATAACGACTCTCTGACTGCTCAGCTCACACAAACAACCTCCTTCATCAATAACGACTCTCTGACTGCtcagctcacacaaacacactccttcATCaataacaatttgatttgctacCTCTATAAGACATTGAATAGAATTACCTAGCATGCTGCGCCCACTGTGCAATCTCTTCTAGTTCCTGTTGTAAGAGCCATGCAAGTTCTAGTGATGAATTATACTGCTAAACATATAGGTGCTTTGCGGTTCCATGTAGATCCCGTTTGAGAGCCATGTTTATGAAGAGAGTCATCGattgaaccctttttggttcaatATAGTACCATCTCTTCTAGCAGTGTCATGTGTCCTAATGTGTTGGTCCTTATATCTTAGAGCAGGGGTGggcagctccagtcctccagggccTGGTTGGtctcacactttttctccatccctagcaaacacagctgattaatcacctggcattctaaactgaagatcaggATCAGGTGATtatt

Function

GO: NA

KEGG:

id description
K24340 COL19A; collagen type XIX alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105926 lncRNA downstream 20546 85346858 ~ 85351766 (-) False G96002
TU105928 lncRNA downstream 20546 85346858 ~ 85351766 (-) False G96002
TU105899 lncRNA downstream 123480 85247340 ~ 85248832 (-) False LOC110510598
TU105890 lncRNA downstream 144190 85227653 ~ 85228122 (-) True G95973
TU105885 lncRNA downstream 154106 85218005 ~ 85218206 (-) True G95968
TU106212 lncRNA upstream 61693 85686408 ~ 85686727 (-) True G96234
TU106217 lncRNA upstream 69821 85694536 ~ 85699631 (-) True G96239
TU106241 lncRNA upstream 118698 85743413 ~ 85743933 (-) True G96261
TU106298 lncRNA upstream 184328 85809043 ~ 85810106 (-) False G96294
TU106297 lncRNA upstream 184821 85809536 ~ 85810106 (-) True G96294
XM_036987644.1 mRNA downstream 72671 85247338 ~ 85299641 (-) False LOC110510598
XM_036987635.1 mRNA downstream 72672 85247338 ~ 85299640 (-) False LOC110510598
XM_036987640.1 mRNA downstream 72672 85247338 ~ 85299640 (-) False LOC110510598
XR_005053210.1 mRNA downstream 127872 85214894 ~ 85244440 (-) False LOC110510599
XR_005051584.1 mRNA upstream 5886 85630601 ~ 85632159 (-) True LOC118964521
XM_036987682.1 mRNA upstream 266862 85891577 ~ 86047176 (-) False LOC110531925
XM_036987698.1 mRNA upstream 266862 85891577 ~ 86047176 (-) False LOC110531925
XM_036987706.1 mRNA upstream 266862 85891577 ~ 86047176 (-) False LOC110531925
XM_036987718.1 mRNA upstream 267808 85892523 ~ 85985296 (-) False LOC110531925
TU105927 other downstream 20546 85346858 ~ 85351766 (-) False G96002
TU105929 other downstream 20546 85346858 ~ 85351766 (-) True G96002
TU105902 other downstream 111780 85258396 ~ 85260532 (-) True LOC110510598
TU105901 other downstream 119995 85249209 ~ 85252317 (-) False LOC110510598
TU105884 other downstream 147162 85218393 ~ 85225150 (-) True LOC110510599
TU107204 other upstream 521294 86146009 ~ 86151339 (-) False G97047
TU107372 other upstream 767846 86392561 ~ 86393089 (-) True G97176
TU107498 other upstream 941762 86566477 ~ 86623311 (-) True G97251
TU107596 other upstream 1162342 86787057 ~ 86788052 (-) True G97308
TU107871 other upstream 1669642 87294357 ~ 87294999 (-) True G97535

Expression Profile