RNA id: XM_036987715.1


Basic Information

Item Value
RNA id XM_036987715.1
length 3045
RNA type mRNA
GC content 0.52
exon number 17
gene id LOC110531925
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 85891577 ~ 86047176 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTCCGTGGGGTGGAGTACCATTGGTTATGCAATCCTTTTTCCTGAACGGTTTTGCCTACGTTGAACAATACCAATGCTTGCGCTCGGAAATGTTTTACATGCCTTGAACAAATGAGAAAGAGCGCAACAGATATCATCCTAGGAAAATATCAATCCTAGGAAAATATATCCCTATTTTGTAACCTGTGAGCCAACCTCCCCCAGCCGCTGTTGCAGCAGCATAGAGAAGCGGAGTATCAATCTCCGGCTGTCCACGGTTTCCAGGGTGAAATGTTCACGTAGGAAGCATAAAAAACCCGCTAATTAAAATAGTTGAGGAAAACAGATCAACCGAAAAAGAAAGCGTCAGTAgcctagtaataataatagtctAAGCATTGAGAACGGAAGAAAAGAGAACAACAAAATCGTTCCGGAAGATAACCCAGACGCGTTCAATAGGCTCTCGCCTAAAGACATAGCGGAACGATTCTTGGGGAACCTGGTCGACTAAAGGATGTAAAACCGTACTAACCGATGCATCCCATACAAAATGCTTATGTGATCGTGTATCTACCTTCGCCATTTTGGCACAGCAACCAAGAGAAATAaCCATGGAGTACTCAGCGGTCCCCTCTGTGACTTTGATCATTGGTTGTGGTCTGTCCTGTCTCGCCTTGATCCTGTTGCTAGTGGTCTATGCTATTCTATGGAGTACTTCCCGTTATTCCAGATATATCCGGTCTGAGCGGTCCATCATCCTAATCAACTTCTGTCTGTCAATCATCTCCTCCAACCTCCTCATCCTGGttggacagacacagacacacaatgcgGGTGTCTGTACCATGACAACAGCCTTCCTTCACTTCTTCTTCCTGGCGTCGTTCTGCTGGGTCCTGACGGAGGCTTGGCAGTCCTACATGGCCGTTACTGGGAAGGTCCGCACCAGGCTCATCAGGAAGAGGTTCCTCTGTCTGGGATGGGGATTACCTGCGTTGGTGGTTGCCGTCTCAATGGGATTCACCAAAGCAAAAGGCTATGGGACACCCCAGTAttgcTGGCTATCTCTAGAAGGTGGTCTCCTGTATGCCTTTGTTGGACCGGCAGCAGCAGTGGTTCTGGTCAACATGGTGATTGGTATCCTGGTGTTCAACAAGCTGGTCTCCAGAGACGGGATTCTGGAGAAGAAGCCGAAGCATCGAGCTGGACCGATGAACGAGCCCCATACAGGGTTAACTCTGAAATGTGCCAAGTGTGGTGTGGTGTCCACCACTGCTCTCTCTGCAACTACAGCCAGTAATGCCATgGCCTCTCTGTGGAGTTCCTGTGTGGTTCTGCCTCTGCTGGCTCTGACCTGGATGTCTGCGGTGCTGGCCATGACAGACAAGCGCTCCATCCTATTTCAGATCCTCTTCTCTGTCTTCGACTCGTTGCAGGGCTTTGTCATCGTCATGGTGCACTGTATCCTGAGGAAAGAGGTCCAAGATGCTTTCAGATGTCGTCTCAGAAACTGTCAGGACCCCAGAAACTGTCAGGACCCCCTCAACGCTGACAACACTGGAACTTTCCCCAATGGTCATGCTCAGATTATGtATGTTTCCAGCAACTGTGGTGGATGCCTGACCAGGCCAGGGCAGTACGGCTCGGCAGGGATCGCCTTGGCTCAGCTCAGTGTGAAAAGGACGGACTTTGAGAAAGACGTTGACATCGCCTGTCGATCAGctcTCCACAAAGACATGGGCTCTTGCCGCGCGGCGACCATCACCGGCACCCTATCCCGTATCTCTCTGAATGACGAGGAGGATGAGAAGGGTCCCGAGGGGCTCAACTACTCCACCTTACCCGGCAACATCATCTCCAAGGTGATGATCCAGCAGCCCGGCATGCACATGGGCCCCATGGGGGACATGGGTGAGGGCTGCCTGGGCGACAGCGTGTCTGACATGCGCCGCACCGTCTACCTGTGCACCGATGATGCTCTCCGTCAGTCCGACCAGGATATGGGCGGGCACGGGCATGGCGGGATGGGCAGTGGCCACGACATGGGCAACATGGGCGGTATGGGTGGTATGAGCGGACATTCACCCCAAGGCCAGATGATGGAGACAGACTACATTGTGATGCCACGAGCTTCGGCGGCGTCAGCAGGATCTGGGAACTGTAACACACTTCCCACTCTCCTGAAGGATGATAGCTCCACCAAGATGAACATGGGCCTGGGCATGGGAGATACGCTGCCCCATGATAGGATGATGCAACACTACAAGATGGCACCGGACTTCAGCATGAGCCCGACGGGGATGGGCGGGATTGGGGTCATGGAGCACATGAACATGGGGGTGAACATGGATCAGAACCTACAGCAGCAGTATGGgtcaggaggaggacaggaacacATGCAGCAGAACCTGCCCTTTGAACCCCGAACCGCTGTCAAGAACTTCCTGGCTGAGATGGAAGAGACTGGAGGGCTGTCGAGGAGCGAGACGGGATCCACCATATCCATGAGCTCCTTAGAGaGAAGAAAATCGCGCTACCAAGATCTGGACTTTGAAAAAGTCATGCACACCAGGAAAAGACACATGGAGCTGTTCCAAGAACTGAATCAGAAATTTCAAACCCTGGATCGATTTCAAGACATACCAAATATGGGCAGCATGGACAAGGCCATGGCCAACAAGAACCCCTGGGAGAGCTACAACCCAGCCTGTGAGTACCAGAACTACGCCAGTATGAATGTACTAGACCCTGACCCCAAGGACTCTCTGGAGATGACCGCAGCAGAGTGGGAGAAGTGTGTCAATCTCCCCTTAGACGTCCAGGAGGGAGACTTCCAGACAGAggtctgatctgatctgatctaaACAAACCAGGAAatgagtccaaaatggcaccctattcccaatgaagtgcactacttatgaccaggtcctataggcctctttttcaccagTACCCAAAGGGCTCTTTTGAACAggactcatagggctctggtcaaaggtagtgcactatatagggaatagggtgacattttggaTGCACTCCAGAAAGGAGACTTCCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106454 lncRNA downstream 7912 85884244 ~ 85884611 (-) True G96423
TU106298 lncRNA downstream 82417 85809043 ~ 85810106 (-) False G96294
TU106297 lncRNA downstream 82417 85809536 ~ 85810106 (-) True G96294
TU106241 lncRNA downstream 148590 85743413 ~ 85743933 (-) True G96261
TU106217 lncRNA downstream 192892 85694536 ~ 85699631 (-) True G96239
TU106533 lncRNA upstream 69693 86054992 ~ 86055225 (-) True G96491
TU106535 lncRNA upstream 80771 86066070 ~ 86066689 (-) True G96493
TU107205 lncRNA upstream 84327 86069626 ~ 86135990 (-) True G97048
TU107210 lncRNA upstream 88361 86073660 ~ 86076651 (-) True G97053
TU107220 lncRNA upstream 117043 86102342 ~ 86104018 (-) True G97062
XR_005051584.1 mRNA downstream 260364 85630601 ~ 85632159 (-) True LOC118964521
XM_036987654.1 mRNA downstream 267807 85358222 ~ 85624716 (-) False LOC110519057
XM_036987651.1 mRNA downstream 267808 85358222 ~ 85624715 (-) False LOC110519057
XM_036987663.1 mRNA downstream 267808 85372312 ~ 85624715 (-) True LOC110519057
XM_036987644.1 mRNA downstream 592882 85247338 ~ 85299641 (-) False LOC110510598
XM_036987761.1 mRNA upstream 236897 86222196 ~ 86223952 (-) True LOC110513354
XM_036987774.1 mRNA upstream 249940 86235239 ~ 86287517 (-) True LOC110531234
XM_036987797.1 mRNA upstream 313741 86299040 ~ 86349770 (-) True LOC110531245
XM_036987786.1 mRNA upstream 368381 86353680 ~ 86402164 (-) True LOC110532855
XM_036987939.1 mRNA upstream 617023 86602322 ~ 86650143 (-) False LOC118966040
TU105927 other downstream 540757 85346858 ~ 85351766 (-) False G96002
TU105929 other downstream 540757 85346858 ~ 85351766 (-) True G96002
TU105902 other downstream 631991 85258396 ~ 85260532 (-) True LOC110510598
TU105901 other downstream 640206 85249209 ~ 85252317 (-) False LOC110510598
TU105884 other downstream 667373 85218393 ~ 85225150 (-) True LOC110510599
TU107204 other upstream 160710 86146009 ~ 86151339 (-) False G97047
TU107372 other upstream 407262 86392561 ~ 86393089 (-) True G97176
TU107498 other upstream 581178 86566477 ~ 86623311 (-) True G97251
TU107596 other upstream 801758 86787057 ~ 86788052 (-) True G97308
TU107871 other upstream 1309058 87294357 ~ 87294999 (-) True G97535

Expression Profile