RNA id: XM_036987797.1


Basic Information

Item Value
RNA id XM_036987797.1
length 6982
RNA type mRNA
GC content 0.48
exon number 20
gene id LOC110531245
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 86299040 ~ 86349770 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGAGCTGAGGCTGGATGCATCTCCCGCCAACCGACGACCATGGCCTCTGAGGCAGCAGCCACGGATGATGCTGCGACGACAGGAGGACCGCCCGAATGCACCGAGATGGAGGAGCAGTTGGCGGAGGGAAGGATGAAGGCAGACGAGGAagctcctcccccctccccggGGCTGGGGGGTTCGGCGATCCGGTGTCGGGAAGTGTGTCGGTCGTACGGTGAACTCAAAGTCCTGAGTAATCTCAACTTGACCGTGCCACAGGGACAGATCTACGGCCTGCTGGGTCCGAGTGGGTGTGGGAAGACCACACTGTTGAAATGCATTGTGGGAACACTGAAGATCTCCCGAGGGCACATCAGCGTGTTGGGGAAGCCGCCCGCATTTCCTGGTCACCAGGTCCCTGGGAGGATGGTGGGGTACATGCCACAGGACCTGGCGTTGTACAATGAGTTTACCATCAGTGACACTCTGACGTTCTTCGGAAGGATCCACGGCCTGTCATCTACGGACACCCAGGCACGCATGGACTTCCTGGTGGACTTCCTGGACCTACCTCAGAAGAGCAAACTAGTCCGAAATCTCAGcggAGGGCAGAAACGGAGGGTGTCTCTAGGAGCGGCCTTACTTCAGAACCCCCAGTTATTGATTCTGGATGAACCCACAGTCGGGGTGGACCCTGTGCTGAGAGCCAAGATCTGGCAGCATCTAGTAGAGATTGTGAAAACTGGAAAAGTATCAGTCGTCATCACCACTCACTACATAGAGGAGGCCAGGCAAGCCAACGTGGTGGGTCTGATGAGGAATGGCCGACTGTTGGCCGAGGGACATCCAGAAACCATGATGAAACAGCACAATGCACCGACCCTGGAGAAAGCCTTCCTGCAGCTGTGTGAGACCTCAGACCAGGTGGGCTCCAAACACAGCACCTCCCCTCTGGGCGGGGTCCTAGAGAGCAGCCAATCATTCGAGAGCGGCCGGGACGAGAGTCAACCAATCCTGGGAGTCGGGCCGGGACCAGTTGAAGAGCTGCCCAAATACTCAGcggacTGGAAGGTACGAGTCAGGCATGTGATGCCAAAGTGGAGGAACATCGCAGCCCTGATTATCAAGACCACGGTGCGGATGAAGAGAATGCCTggGTCCCTGTGTTTCCAGTTCCTTCTGCCAGTCATCCAGATCTCTCTGATGTGTCTGTGTATCGGAGGAGACCCCAAAGAAATACAGGTGGCTGTGGTCAACAATGAGACCTCCTCCAGCTCCTATAGCCAATCCCTGCTCTCCTTCCTGGACAACTCCAGCGTGCAACAGGTGAACCTGTCCCATGCTGAGGCTTTTTCAGGGGCCTATAATGGAGAGTACTGGGCCGTCATCGGGTTTGGAAAGAATTTTACCAGCTACCTGACCAAGAGGATGATCCAGCAGCAGGTCTCTAAGGAGGTGGTGGATGGAGGGTCGGTGCACGTCAGGTTGGACCAGACCAATCAACAGATCGCCATGATGCTTCAGAAGAAACTAGCCGATGCCTTTGAGGACTTCGTCCAGTATAAGATGGGGAGCATGTCTTACCTGGTCTCTCTTCCTGTCAAGTTTGAGGAGCCCATCTATGGCAGCATGAACTCAGACTTCACCACGTTTGTGACGCCAGGAGCCGTTCTGAGCATCACGTTCTACCTGGCAGTGGGCTTGACGGCTCTGTCCTTCGtgatagagaggaaggaggggctAATGGACAGGTGCTGGGTTGCAGgtgttAGTTCGTTGGAGACTGTGCTGGCCCATCTCATCTCCCAGCTGTTTGTCATCAGCATCCAGGTCATTCTACTACTGCTCTTAATGCTGCTCGTcttcaagatccCTAATGAGGGGAGCCTGGTGTTGGTTATAGCTCTGATTGGGCTGCAGGGTGTGACTGGCATCTCCTTTGGTCTGGTCATCTCATCTGCCATCGATGATGAACAGAACGCCAACCAGGCTGCCCTGGGTGTCTTCTACCCCAACCTCATCGTCAGTggtATAATCTGGCCCGTGGAGTGCATCCCCTATCCACTACGTTACATCAGTCTGGCCCTGCCCCAGACCTACGCTTCTGAAGCCCTACGATGCATCATGtacagagGCTGGGGTCTCTCCAGGATGATGGTGTGGCGAGGCTTCGCTGTCACCCTGGGCTGGAACACTTTCTTCGTCATCCTGGCCATCGTCATCCTCAAGCTGAGGACCTGAGACGTCTACCCGGGGGGGAGGGGGGCTTCCTAGTCTCAGGATGTCTGTGTCGGGGGACACTGTGCTTTAAGGGAGAAAGTGCTGGTTTTCCAGAGGTCATCTTGCAGACAGACCCTCACCCACACCGACACGCACAatcacaccccctcctcccccctcctgctTGCCAACTAGCTAACCCTGAGAACCAGAGTCTATGGGTGAAGGACTACTAGGTGGGGCGAATCATTCCAAATCTTGCAGGTAGAAATCTACTTCATAGAAAGGATAGCGTTCGCTATTCCATTAGAGAGTTGTGGCTGCTCTTTTATGTTGTCGTCTTTCATGCTGCAATGCTTTGAATGTTTCAACCGCCTGAATCTGCCCTGCAGGCAATGTTTCTCAACCCAGTTGTTTTACAGCCTACTTTATTACATACAGCCCAGCTAGCACATATGGTTCCTTTGAAGTTGTAGGAACGTATgttttttggtttcacattggttgtgggaagGAAGCCATagtttcctgaccggtaaaactGAAAAGTTCTTCAAACATTCTGAGAAGAGAAGTTCCAGGAACAAGCTAAATTGTCACGTCGTACTTCTCTGAACTAtctgagaacattcccaatgtcaaaccagttggagaacattaccaacattgaaatgaaatgtAGCTGTATTTGAACTTATATGAAACGTTGAAATACATAACGTAATGAAATaccaaaatacgttttttttgttgtcaagttcattaaatgtgctgagaatgttccaaagccaaacaactatcctgcaccattcccaggaagttgtgggaaggttgtatgctaAATAACCATAGAACAACCACACCCTCACTAAGCTCTATgtaacatatggttctcagaacgttatgtgcttgCTGGGAGTATTGTCTGATTCACAGTGCAGGGCCGGgccaagctgtactgggctggcctggtgaCGCGTCCACCATAGCTGCTGAAACCATGTTGGAAAGGATCATGCGAAGATAAAATATCAGAGCCAATAACGGTTCAGGTCGTTGCTATAGTGTGAATCAGACATCAGTCCAACGGCTGGTGGAGCCAGAGAACtgaggttgagaaacactgtggagtagaagtgctgatctagggtcaggtcctccctgtccataaTAATAATGATTTATTGTGATGCAAacggctaaactgatcctagatcaacacccttactctgagacgcttgataaTAGGGTTCCTGATCACTGTCATGTATGATCTGACCTTAGGCATGTTTAACTTGTACCACCTGTTCTCAACATAACACTGCATTGATTGGAGGGTTATATTTAGAGTTGCTGTTGAGGGTTTATGAATAACCTCTTCTACAGTATATGTTGACGGTATTTACACACATGATAGAGAgatttattatactatatatttcatattttttgaGGGAACTGTGTGTAAACAAAAGAATACAATTTGAATGTTTTTGGTATTGTGGTGTTACTGGATAGAGCTCTTCTTAGCTACTGGTGTGTGGGTAAAGAATGGCCAAGAAGGACTCCCGTTTCACAGACGTTTTACTGAAGGATGTTCTCTGATGATGGGAGTTCCTGTTCAGTAGATGTTCTTCTACAACTGGTGGCGACACCGGCTCTGTCCAGGCGCTCGGCCCGGCTCTGTCCAGGCGCTCGGCCCGGCTCTGTCCAGGGGCTCGGCCCGGCTCTGTCCAGGCGCTCGGCCCGGCTCTGTCCAGGCGCTCGGCCCGGCTCTGTCCAGGCGCTCGGCCCGGCTCTGTCCAGGCGCTCGGCCCGGCTCTGTCCAGGCGCTCGGCCCGGCTCTGTCCAGGCGCTCGGCCCGGCTCTGTCCAGGCGCTCGGCCCGGCTCTGTCCAGGCGCTCGGCCACAGAACGATGTCCACGTCCGTGCGATTAGCATGCGAGCAAACCTCCCAGACAACTGACTAACCTCATCATGGCACGCCCACCAACCAATGAGCGACTAGCAGAAGGTGGACAGTAGAACCCACGGGGGAGGAGCTATCCCATCTGCACTACAGTATGGATAGAAGTATATTTTGATGAACTGAAATGCTAAACTCAATGTCggacaaaaaaaaaactaaacttaTTTTTGTCCACCGCTATTTCCAGGGGCCTCTGGGTCTGAATTCATAAAGCAGAGtggaagtgctgatctaggaccagttttgccatttaaatcataatgaatacgattacatggacaggaggggacctgatcctagaccagcctACCAATTCTGAGGTTATTTGTGGATATGAGCTCTGGTCTCTTATCTGTATTTTGTTCTGTTTTGCTTCCTGTTGCCTGTTTTGACAGGAAGTGGTGACCCTGTCTCTCTATTGGTTACCAGGTGATCTAACCTCCCAGTATTGGCTTGCTGCTGAAGTAGCCTTGGCTTCTGGTTATTGGTGGAATGCAGTATTTCTGGAGTCTGTTGTGTGCCTGTGCTTGCCTCATACCCCTTATAAAAAAGGGCAGTTTGATTGATTGTCCTGATGGTGATTGCATGGGGCTTGTCCCGTCGTGGTTGACAGTTCTGTCAGTGGTCGTGTTTGTTTATTGGGATCCCTGTTatcttttgcagaagcagcagctactcttcctggggtccacctaaaacacacaacatgacaagtaacaaaacactggtacactgatagacaaggacagtcacacacatcTAAAATACATGAATATACAAcaataaattgtgtgtgtgtgtgtgtgtgtgtgttacctgagaaGGTCATCAGCTTTTAATTACTTTTGTCTTCCCATCACCCCCCTGCTGCTGGACAGAGTGGTGGCTGCTGGGTAAAGCCCTTGGACATGTACCACAGCAAAGAGTATCCAGTCAGTTCTGTTTTAATGACATCTCTCCAGCATGTCCACTCATTGTGTTTTATTACTGCTGgtatattataatgtattattccatatGTGAAATCAAAGTGTCCAACAACAGATATTGAGGTCTCTTAACTTCCCTGAGCCGGGATCAATACATTTCTCTGATCCAATGGGAGCTCTCTATATATTTCAGAGTTTCTATTGGGTTTGGGGACGATTGACAGCAGCCCGTGGTATTCCGGGGGTTCTGAGATTTCATATCTTGTATTTCTAGTGTCCATCCTTCAAAGTCGTGCCATTGACCACTATTACTGACTGAGAAATATGTTTACACGCATCGAACCGACAAAGTGCTGATGACTTGAACCAGAAAAAGGCTGAGAAGAGCTCACGGCAGAAGGAGCTAGTTCACGTCACTCGGTTTCTGGTTGATAAATATGATAATAGAGAAGGTACCATGTTAACTTATGAAGCTAAAGCATCTACACCAGCATGTGTGTTACTGAAATTGATTGATGTTTTCTGAAGAATTGTGAATTTTAGACCGTAAGGCAACTTTTCAAGGTAACTGCAGAAGTTACATTTAccttgcttcccaaatggcaccctattccctacatagtgcactattttttttGACCaaacccctatgggccctggtcaaaagtagtgcactatatatatataaggaatagggttggCATTTGGGGTGCATTCTTAAACGTCCTTGTTTAACGTGACATATTTTAGAAAAGTCAAGTTTGtattatagagagagagtgtgttataCAAATCAAGTTTCAATTGAGGAAAGTGACATAAATATTTATATGTATCGCATTGGGGTCAAGAGGTCAAGGACCATCACGGCTGAACCTTGGAGTTTATTAAGTGTTAATTCATGTGGAACTCCATATTTATTGTGTTTCCTGTTTTGCTCACGCTCCGTTGCCTTTTATGTGTTTTGCTTTGTGCTGCTATTTCCCACATCTTAAGGGACACATCCACATTCATCTGGAATGTATGTGTCTTACAAATGACATAACAGGTGTTATAAACACGTGTGACTGCAGATGACTTGTGACTTATCTTATGACGACTGACATGACACAAACTGGAGTTGGGGTTGGAAATCCATCAAATCCTTCATTAGATTGTAGCCCTGTTATAACagacataatatatatatatatatatatatatatatataacctgttatGTCAGCTTATGACAACTGActtaacactgtcatgacaccaAACTGTTATCTAGGTCAGCTAGTTACCACTAGCCAACTAGCTTATAGATCATTTTAAGACTATTTATGTCATTTGTTTTGTCAATGATATGTAGGCCTTATGCCAGGGCATAGGGTTCAGGTAACGTGTTAGCTGCCATGTataggttgcgtcccaaatggcaccctattctctacatagtgcactcatttttaccagaggcctatgggtactggtcaaaggtagtgtacatTAAAGgcaatagggtggcatttggaacACAGCCATAGCGTCAGCTCTGCTGGTGTCTGTGACTCTATACTTCTACCTCCTCCATGTTCCCCCCCAAAGGGCCATTTATATATGTATCcataccagacctgggttcaaatactatttggaaTCTTTCGAATCATTTCATCCTTTGCTTTTAGCCTGTCTGGAATACgagatgggcggggtttgcagTTTTGcaactattctattggttccattgtgccaggcaaACATGATCGAGCCCAGCTAAAGGATTTTAAGTTACTGTATTTtgaatatactgaacaaaaataagcgcaagaagtgttggtcctatgttttatgagctgaaataaaagttcccagaaatgttccatgtgcacaaaaa

Function

GO: NA

KEGG:

id description
K25167 ABCH1; ATP-binding cassette, subfamily H

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107331 lncRNA downstream 24770 86267122 ~ 86274270 (-) True G97141
TU107327 lncRNA downstream 33235 86263943 ~ 86265805 (-) True G97138
TU107325 lncRNA downstream 35450 86263248 ~ 86263590 (-) True G97137
TU107321 lncRNA downstream 42920 86255887 ~ 86256120 (-) True G97133
TU107317 lncRNA downstream 52093 86246050 ~ 86246947 (-) True G97130
TU107376 lncRNA upstream 46135 86395905 ~ 86410402 (-) True G97177
TU107378 lncRNA upstream 67361 86417131 ~ 86417773 (-) False G97178
TU107379 lncRNA upstream 67361 86417131 ~ 86417964 (-) True G97178
TU107393 lncRNA upstream 69995 86419765 ~ 86420017 (-) True G97191
TU107420 lncRNA upstream 102830 86452600 ~ 86502883 (-) True G97208
XM_036987774.1 mRNA downstream 11523 86235239 ~ 86287517 (-) True LOC110531234
XM_036987761.1 mRNA downstream 75088 86222196 ~ 86223952 (-) True LOC110513354
XM_036987692.1 mRNA downstream 251864 85892523 ~ 86047176 (-) False LOC110531925
XM_036987696.1 mRNA downstream 251864 85892523 ~ 86047176 (-) True LOC110531925
XM_036987715.1 mRNA downstream 313741 85892523 ~ 85985299 (-) False LOC110531925
XM_036987786.1 mRNA upstream 3910 86353680 ~ 86402164 (-) True LOC110532855
XM_036987939.1 mRNA upstream 252552 86602322 ~ 86650143 (-) False LOC118966040
XM_036987922.1 mRNA upstream 252552 86602322 ~ 86650146 (-) False LOC118966040
XM_036987937.1 mRNA upstream 252552 86602322 ~ 86650167 (-) False LOC118966040
XM_036987927.1 mRNA upstream 253537 86603307 ~ 86650148 (-) True LOC118966040
TU107204 other downstream 147701 86146009 ~ 86151339 (-) False G97047
TU105927 other downstream 947274 85346858 ~ 85351766 (-) False G96002
TU105929 other downstream 947274 85346858 ~ 85351766 (-) True G96002
TU105902 other downstream 1038508 85258396 ~ 85260532 (-) True LOC110510598
TU105901 other downstream 1046723 85249209 ~ 85252317 (-) False LOC110510598
TU107372 other upstream 42791 86392561 ~ 86393089 (-) True G97176
TU107498 other upstream 216707 86566477 ~ 86623311 (-) True G97251
TU107596 other upstream 437287 86787057 ~ 86788052 (-) True G97308
TU107871 other upstream 944587 87294357 ~ 87294999 (-) True G97535
TU108928 other upstream 1563532 87913302 ~ 87915900 (-) False LOC110531505

Expression Profile