RNA id: XM_036987786.1


Basic Information

Item Value
RNA id XM_036987786.1
length 4340
RNA type mRNA
GC content 0.45
exon number 20
gene id LOC110532855
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 86353680 ~ 86402164 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCGTGTAATGTCCTCCCTATCCGGCGAGATAAGCCCGGGGTTCCCGAACGAATCGTTGTGATGGTCATCTTCAGTATTCTTCAAAACCACCAGAGACAAAAGGGGAAGAAAAAAACACAACGTATTGATCAGTTGACAGAAGGAAGGATGAAGGCAGACCAGGAagctcctcccccctcccccggaTTGGAGGATTTGGCGATCCGGTGTCGGGAAGTGTGTCGGTCGTACGGGAAACTCAAAGTCCTGAGTAACCTCAACTTGACCGTACCACAGGGACACATCTACGGCCTGCTGGGTCCGAGTGGATGTGGGAAGACCACGCTGTTGAAATGCATTCTGGGAACCCTGAAGATCTCCCGAGGGCACATCAGCGTGTTGGGGAAGCCGCCCGCATTTCCTGGACACCAGGTCCCTGGGAGGATGGTGGGGTACATGCCACAGGACCTGGCGTTGTACAATGAGTTTTCTATCAGTGACACTCTGACATTCTTCGGAAGGATCCACGGCCTGTCATCTACAGACACCCAGGCACGCATGGACTTCCTGGTGGACTTCCTGGACCTACCTCACAACAGCAGCCTGGTTGGAAAACTCAGcggAGGGCAGAAACGGAGGGTGTCTCTAGGAGCGGCCTTACTTCAGAACCCCCAGTTATTGATTCTGGATGAACCCACAGTCGGGGTGGACCCTGTGCTGAGAGCCAAGATCTGGCAGCATCTAGTAGAGATTGTGAAAACTGGAAAAGTATCAGTCGTCATCACCACTCACTACATAGAGGAGGCCAGGCAAGCCAACGTGGTGGGTCTGATGAGGAATGGCCGAATGCTGGCAGAGGGGGAACCAGAAACCTTGATGAAACAGAACAGTGCTGTGACCCTGGAGAAAGCCTTCCTGCAGCTGTGTGAGACCTCAGACCAGGTGGGCTCCAAACACAGCACCTACCCTCAGGGTGGGGTACTAGAGAGCGGCCAATCACTCGAAAGCGGCCGGGAAGAGATTCAATTAATCCTGGGAGTCGGGTCGGGACCAGTTGAAGAGCTGCCCAAATACTCAGcggacTGGAAGGTACGAGTCAGGCATGTGATGCCAAAGTGGAGGAACATCGCAGCTCTGATTATCAAGACCACGGTGCGGATGAAGAGAATGCCTggGTCCCTGTTTTTCCAGTTCCTTCTGCCAGTCATGCAGATCTCTCTGATGTGTCTGTGTATCGGAGGAGACCCCAAAGGAATACAGGTGGCTGTGGTCAACAATGATACCTCCTCCAGCTCCTATAGCCAATCCCTGCTCTCCTTCCTGGACAACTCCAGCGTGCAACAGGTTAACCTGTCACATGCTGAGGCTTTTGCAGGGGCCTATAATGGAGAGTACTGGGCCGTCATCGGGTTTGGAAAGAATTTTACCAGCTACCTGACCAAGAGGATGATCCAGCGGCAGGTCTCTAAGGAGGTGGTGGATGGAGGGTCGGTGCACGTCTGGTTGGACCTGACCAATCGACAGATCGCCTTAATGCTTCAGAAAAAAATGAAAGATGCCTTTGAGGGTTTTATCCAGTATAAGATGAGTAGCAGGTCTTAcctgctctctcttcctgtcaAGTTTGAGGAGCCCATCTATGGCAGCATGAACTCAGACTTCACCACGTTTGTGACGCCAGGAGCCGTTCTGAGcATCACTTTCTACCTGGCAGTGGGCTTGACGGCTCTGTCCTTTGtgatagagaggaaggaggggctAATGGAAAGGTGCTGGGTCTCAGgTGTGAGTTCAATGGAGACCGTGCTGGCGTATCTCATCTCCCAGCTGATTATCATCAGTGTCCAGATAATTCTACTACTGATCTTAATGCTGCTTGTCTttaagatCCCTAATGAGGGGAACCTGGTGTTGGTTATAGCTCTGATCGTGCTGCAGGGTATAACAGGCACTTCCTTTGGTCTGGTCATCTCATCCGCCATCGATGACGAACAGAACGCCACCCAAGCTGCCCTTGGTATCTTCTACCCCAACCTCATCGTCAGTGgtATAATCTGGCCTGTGGAGTGCATCCCCTATCCACTACGTTACATCAGTCTGGCCCTGCCCCAGACCTACGCTTCTGAAGCCCTACGATGCATCATGTACAGagGCTGGGGTCTCTCCAGGATGATAGTGTGGCGAGGCTTTGTTGTCACCCTGGGCTGGAACACTTTCTTCGTCATCCTGGCCATCGTCATCCTCAAGCTGAGGATGTGAGACACCTGCCCAGGGAAAATGTGTGCTTATGTAGTGTATGTGAGTGCGTGAGGGTTTTGTGTGGGAGTGTCAatatggtgtgtgtatatatagtctagtgagtgtgtatatatagtctagtgagtgtgtatatggtgtgtgtatatatagtctagtgagtgtgtatatggtgtgtgtatatatagtctagtgagtgtgtgtagggtcagtgcagatagggTAGCTTTCCCCCTCAGTCACGTTAGTTTGGCTACTCAACCTATCTATTTGTCACTCACAAACCAATCAAAATGCCTGAAATGTGCGTCTGGACACTGCACCCACCCACTCAGGTGTTACGAGTGTAATCACCGTCAGGAGAGTGATCATCGTCTGAGGACTGTTATGGACAATAACATGAATGGGTGTGATACGTTTACAGCAGGATTCTACTGTCCTGCCGCTATAAGTCTGTAATGTTAGTGTGTTTTCCCGACACTGCTTTGCATATTGTTGATAGTTAATTGCCATTATTGCATTGGTTGCACAGGTGTTTTATGGAGGAGATTTGTTGTACTGGTAACACAAGGCGGGAATTGTTAAAAGTTAAGAAGGGTATTTTTTGTCAAAGCAGCTGTTAAGGGTCAGAGTTATGCGTAGCCTCATTAGACGGACTTTCAAACGCACAACTAGGTTGCCTGGCAACTCAAACTGAATCATTCCGCTGCTCGATGTTCGCTACATACTTCATTGCGCAGAAGGAACCAACGTCCGTGGGCATGGCGTAGCTTTTGGCCAGAGAAAGGATTTTGGCCCATATATGTCATGTCTTTCTAGAATGCCCTTTTAAGAAATATTCATTGGGAAAATGTTTGGTCTCTTTCTCAGAAGTTTATTTTAACTAATAATATTAAAGAAGTTTAATATAAATTAATCCACAAGTGCTGCCCTACTAAACATGATCTtgaagttttaaaaaatacattgatGTTTCTTGTACCTTCTGTAATGACCAACATTACCTTCTGTAATGACAAACATTACCTTCTGTAATGACCAACATTACCTTCTGTGATGATCAACATTACCTTCTGTGATGATCAACATTACCTTCTGTAATGACCTACCTTCTGTAATGACAAACATTACCTTCTGTAATGACAAACATTACCTTCTGTAATGACCAACATTACCTTCTGTGATGATCAACATTACCTTCTGTAATGACCAACATTACCTTCTGTAATGACCTACCTTCTGTAATGACTAACATTACCTTCTGTAATGACAAACATTACCTTCTGTAATGACCAACATTACCTTCTGTAATGACAAACATTACCTTCTGTAATGACCAACATTACCTTCTGTGATGATCAACATTACCTTCTGTAATGACCTACCTTCTGTAATGACAAACATTACCTTCTGTAATGACAAACATTACCTTCTGTAATGACCAACATTACCTTCTGTGATGATCAACATTACCTTCTGTAATGACCAACATTACCTTCTGTAATGACCTACCTTCTGTAATGACTAACATTACCTTCTGTAATGACCAACATTACCTTCTGTAATGACCAACATTACCTTCTGTGATGACCAACATTACCTTCTGTGATGACCAACATTACCTCCTGTAATGACCAACAGGAGACTGCTTCACATTTAGTTTGGTATTGCTCTTATACCAGGAAGCTGTGGCAAGATATCTGGAGATTGTTTTCGATCATAAACATTTTCCCTTCTACTTGAAAATGTGATATTTGGTTTTAAAAGTATAGCAAATTAGTTCTTCTTAAATCAACCTCATTGGTATTTTATCTCAATTCCATATTCATAAATGTAAATTACAAAAACCTCTTTACTATTTTTGGAATGAAATTGAACAATAAATAAAGAACATTTCTTCTTCTGATAACAAAACCAACCAAAAGGTTGAATGTAGTAATAAGGTGTTGACATAATGTATGGGCTGCATTACCCTGAATGTTTGTTATGTTTAGATACTCTGTTGTGTACTCTGTTTGTTATGTTTGGATACTCTGTTGTGtactctgtttgtttttctatatgTGGTATTTTTTTAACAATAAAATTAAAAAGACAACTAGGCA

Function

GO: NA

KEGG:

id description
K25167 ABCH1; ATP-binding cassette, subfamily H

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107359 lncRNA downstream 8304 86344207 ~ 86345376 (-) True G97163
TU107356 lncRNA downstream 12910 86340306 ~ 86340770 (-) False G97161
TU107357 lncRNA downstream 12910 86340306 ~ 86340770 (-) True G97161
TU107351 lncRNA downstream 25673 86326220 ~ 86328007 (-) True G97156
TU107331 lncRNA downstream 79410 86267122 ~ 86274270 (-) True G97141
TU107378 lncRNA upstream 14967 86417131 ~ 86417773 (-) False G97178
TU107379 lncRNA upstream 14967 86417131 ~ 86417964 (-) True G97178
TU107393 lncRNA upstream 17601 86419765 ~ 86420017 (-) True G97191
TU107420 lncRNA upstream 50436 86452600 ~ 86502883 (-) True G97208
TU107443 lncRNA upstream 63928 86466092 ~ 86538953 (-) False G97224
XM_036987797.1 mRNA downstream 3910 86299040 ~ 86349770 (-) True LOC110531245
XM_036987774.1 mRNA downstream 66163 86235239 ~ 86287517 (-) True LOC110531234
XM_036987761.1 mRNA downstream 129728 86222196 ~ 86223952 (-) True LOC110513354
XM_036987692.1 mRNA downstream 306504 85892523 ~ 86047176 (-) False LOC110531925
XM_036987696.1 mRNA downstream 306504 85892523 ~ 86047176 (-) True LOC110531925
XM_036987939.1 mRNA upstream 200158 86602322 ~ 86650143 (-) False LOC118966040
XM_036987922.1 mRNA upstream 200158 86602322 ~ 86650146 (-) False LOC118966040
XM_036987937.1 mRNA upstream 200158 86602322 ~ 86650167 (-) False LOC118966040
XM_036987927.1 mRNA upstream 201143 86603307 ~ 86650148 (-) True LOC118966040
XM_036987911.1 mRNA upstream 261351 86663515 ~ 86698225 (-) False LOC118936335
TU107204 other downstream 202341 86146009 ~ 86151339 (-) False G97047
TU105927 other downstream 1001914 85346858 ~ 85351766 (-) False G96002
TU105929 other downstream 1001914 85346858 ~ 85351766 (-) True G96002
TU105902 other downstream 1093148 85258396 ~ 85260532 (-) True LOC110510598
TU105901 other downstream 1101363 85249209 ~ 85252317 (-) False LOC110510598
TU107498 other upstream 164313 86566477 ~ 86623311 (-) True G97251
TU107596 other upstream 384893 86787057 ~ 86788052 (-) True G97308
TU107871 other upstream 892193 87294357 ~ 87294999 (-) True G97535
TU108928 other upstream 1511138 87913302 ~ 87915900 (-) False LOC110531505
TU109033 other upstream 1661298 88063462 ~ 88064854 (-) False pex13

Expression Profile