RNA id: XM_036987899.1


Basic Information

Item Value
RNA id XM_036987899.1
length 2670
RNA type mRNA
GC content 0.47
exon number 12
gene id LOC118966035
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 86562981 ~ 86595571 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctctctcctctctactgccAGTGCCTTCAGGCTCACTAGGCTGAGATGATTGACTGTTACGGCGCCAAATGAATCATTtgttattttaaaacatttgtcTGCATCAGCCTCAAGGGACTTCAACCTCTTCTCTCTCCGCTTCTCAGGACAACCTTTACGTTTTTCTCTTTTTGTTTGTCCATCTTGCTCCACTCCACTATTTATCCAAATGTCTCCTCGGGCCCAGGAATAATGGAGACTGGACCAGACAGTCTGTTTTTGACTCTCCTGCTTCTCCTCCACAGTTCACACTCTGTATCTGAGAGGTTTGAGGTTCTTGGTCCATCTGATTCCATTGTTGCTGTGGCTGGTGATGACATCATTCTGCCCTGTTACCTCAaacccaacatcagtgctgaGGACATGACAGTGGACTGGCTGAACCTGGACTTCTTAGACGGTCGTGTCTTTCGTTACCAAAACCACAGAATCATACGAGAGGATCAGATTCTCTTCTATAGAGGAAGAACTTCACTGTTTGAAGAGGAACTATGGAGGGGCAACACCTCATTGAAACTGACCAGGGTACAAGGCACTGATGAGGGACGTTACAAATGCTTAATTCAGGCAAAGAGCTGGTATGATGATTTCACTGTTCAAGTCCTCGTTAAAGctGTAGGATCCAAGCCAGTGGTGTCCATtgagggacacagagagggagggatgggtctGCTGTGTGAAACAAAAGGCTGGCACCCTGAGCCTGAGCTGGTGTGGCTGAACAGTAAAGGAGTCCATCTCTCTGCTGGTCCTCCTGAGATACATAGAGACTTAGATGGATTCTACACAGTCAAACAACATGTCATTGTCCAGGAGACTGACACCAACCGCTTTACCTGCAGAGTCCAACAGAGCCAGATCAATgagaagatggagacagagattcACCTCCCTAttgtCGGATCCAAGCCAGTGGTGTCCATTGAGGGAcacagagggggagggatgggcctGCTGTGTGAAACAGAAGGCTGGCACCCTGAGCCTGAGCTGGTGTGGCTGGACAGTAAAGGAGTCCATCTTTCTGCTGGTCCTCCTGAGATAGATAAAGACTCCAAGGGATTCTACACAGTCAAACAACATGTCATTGTCCAGGAGACTGACACCAACCGCTTTACCTGCAGAGTCCAACAGAGCAGGATCAATGAGAAGATGGAGACGGAGATTCACCTCCCTAGTGAGTTATTTGATCCAACCCCATTGAGAATGGCCTTCATTGTGTTATGCTGTCTGGGAGCCATCGCTGTGATTGGTTTATCTCTGGCTATCTACTGCATATGTTATAAGAAAGATGACCTCACTAGGAAGCTAGATTACCTCACTGAGAATCGAGATGTCCTCAGGAAGGAGAAGGAAATCCTGACTTCTCAGCTGGATTTTGAAACCATCAGAAGACATGCAGTGGATGTGACTCTAGACCCTGATACTGCACATTGTAAACTTATCCTGTCTGATGACGGGAAACAAGTGAGACATGGAGAACTAGATCAGGTTCTCTCTGACAACGGGAAGAGGTTTACAAATTGGTCCTGTGTCCTGGGAAATGTGGGCTTCTCAGGGAAGTTCTACTATGAGGTGAAGGTGGAGGGGAAGACTGAGTGGACTTTGGGGGTGGTCATACAGTCCATCAATAGGAATGAGAGTTTTATACCAATGCCTAATAATGGATACTGGActgtggagctgaaggatggagaGTGCACAGCTAATGCAGATTCCCCTCTCACCCTCTTACTGAGAGAGAAGCCCCTGAAAGTGGGGGTGTTTGTGGATTATGAGAAGGGACAGGTCTCCTTCTACAATGTGGAGGACAGGTCTCATATCTACTCTTTCACTGGCTGTACCTTCACTGAGAAACTCCATCCATTCTTCAACCCTGGTGGTTCAGATAGTATTCCACTGGTCGTCTGTCCTGTGGatgccactgactgactgttttaAATCAAACAAGGTGCAATTGTTATTTGTGAAATGCTTGTTACTCTGCTAATGTGcagtaaatatactgtatataatttttaaaaaagtgctgaacaagtagttatattgacaacgtccgtcctagctcgctcatttatgtcttaatcgaaattatggATTGTCTCTTATCCGCTcctcgttcccttatgccatagtttgtacatctcaattgtcagtagaaaccacatttgtttaaacaagtcAGCCATATGAGCTATATTTTTTAagaaggcagtaaatgaggctgatttttttttgtaccttttatttaactaggcaagtcagttaagaactcattcttatttccaatgacagcctaggaacagtgggttaactgcctgttcaggggcagaccgacagatttgtaccttgtcagctcaggggtttgaacttgcaacctttcggttactagtccaacgctctcaccactaggctaccccgtttcactgccagacatggctccgctgatagccaggtgtaaggtgttgggactgctgatGGGACTCTGCTGATGGGACTCTGTtgatgggactctgctgttgggactctgctgttgggactctgctgttgggactctgctgttgggactctgctgttgggactctgctgatgggactctgctgttgggactctgctgatgggactctgctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106765 lncRNA upstream 13189 86549405 ~ 86549792 (+) True G96662
TU106737 lncRNA upstream 44666 86517772 ~ 86518315 (+) True LOC118966027
TU106755 lncRNA upstream 50394 86510222 ~ 86512587 (+) True G96652
TU106750 lncRNA upstream 69376 86492772 ~ 86493605 (+) True LOC118966033
TU106733 lncRNA upstream 83020 86479184 ~ 86479961 (+) True G96632
TU106779 lncRNA downstream 3944 86599515 ~ 86600903 (+) True G96674
TU106776 lncRNA downstream 18865 86614436 ~ 86637361 (+) False G96673
TU106794 lncRNA downstream 32369 86627940 ~ 86628418 (+) True G96687
TU106795 lncRNA downstream 32907 86628478 ~ 86629323 (+) True G96688
TU106797 lncRNA downstream 36878 86632449 ~ 86641456 (+) True G96690
XM_036989999.1 mRNA upstream 3718 86557726 ~ 86559263 (+) True LOC118966726
XM_036989992.1 mRNA upstream 9326 86537425 ~ 86553655 (+) True LOC118966725
XM_036987854.1 mRNA upstream 33903 86517811 ~ 86529078 (+) False LOC118966027
XM_036987872.1 mRNA upstream 67252 86492105 ~ 86495729 (+) False LOC118966033
XM_036987876.1 mRNA upstream 67252 86492105 ~ 86495729 (+) False LOC118966033
XM_036987946.1 mRNA downstream 141313 86736884 ~ 86756777 (+) True LOC110531632
XM_036987960.1 mRNA downstream 168716 86764287 ~ 86783717 (+) False LOC110516875
XM_036987949.1 mRNA downstream 168717 86764288 ~ 86783717 (+) False LOC110516875
XM_036987957.1 mRNA downstream 169059 86764630 ~ 86783717 (+) True LOC110516875
NM_001124330.1 mRNA downstream 775212 87370783 ~ 87373089 (+) True LOC100135993
TU106748 other upstream 67289 86492069 ~ 86495692 (+) False LOC118966033
TU106719 other upstream 102139 86460228 ~ 86460842 (+) False G96630
TU106659 other upstream 123509 86430202 ~ 86439472 (+) False LOC118966024
TU106660 other upstream 123509 86430202 ~ 86439472 (+) False LOC118966024
TU106654 other upstream 149769 86411207 ~ 86413212 (+) True G96577
TU108152 other downstream 1161470 87757041 ~ 87757546 (+) True G97752
TU108449 other downstream 1325436 87921007 ~ 87922414 (+) False LOC118966052
TU108569 other downstream 1535467 88131038 ~ 88144441 (+) False G98104
TU108570 other downstream 1535467 88131038 ~ 88144441 (+) False G98104
TU108836 other downstream 2041479 88637050 ~ 88744413 (+) True LOC118966060

Expression Profile