RNA id: XM_036987939.1


Basic Information

Item Value
RNA id XM_036987939.1
length 2282
RNA type mRNA
GC content 0.44
exon number 15
gene id LOC118966040
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 86602322 ~ 86650167 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAATACATATCTGAACACTGCACTCGCCCACTCAGGTCAGAGCCTTATCATCGTCTGATGGGAGAGGACGCATGTTTCTGAGGAATTTTTATTGTTGATCGTAGCACTGAACATTGTGCGTGCATCGAAATATCAAATGTCTCTTTCAGGAATAATGGAGACTGGACCAGACAGTCTGTTTGTgactctcctgtttctcctccaCAGTTCACTCTCTGAGTCAGAGAGGTTTGAGGTTCTTGGTCCAACTGATCCCATTGTTGCTGTAGCTGGTGATGACATCATTCTGCCCTGTCACCTCAAACCCAACATCAGCGCTGAGGACATGACAGTGGACTGGCTGAACCTGGACTTCAAAGATGGTCGTGTCTTTCGTTACCAAAACAGAAAAATCATACGAGAGGATCAGATTCCCTCCTACAAAGAAAGAACTTCACTGTTTCAAGAAGAACTCTGGAGGGGAAACACCTCTTTGAAACTGACCAGGGTACAAGGCACTGATGAGGGACATTACAAATGTTTTATTAAGGCAAAGAGCTGGTATGATGATTTCACTGTTCAAGTCCTCGTTAAAGctGTAGGATCCAAGCCAGTGGTGTCCTTtgagggacacagagagggagggatgggtctGCTGTGTGAAACAGAAGGCTGGCACCCTCAGCCTGAGCTGGTGTGGTGGGACAGTAAAGGAGTCCATCTCTCTGCTGGTCCTCCTGAGATAGATAAAGACTTCAAGGGATTCTACAGAGTCAAACAACATGTCATTGTCCAGGAGACTGACACCAACCGCTTTACCTGCAGAGTCCAACAGAGCAGGATCAATgagaagatggagacagagattcACCTCCCTAGTGAGTTGTTTCATCACACTAGCCCATGGAGAATGGCCTTCATTGTGTTATGCTGTGTGGGAGCCTTCACTGTGATTGGGTTATCTCTGGCTATCTTCTGGATAAACAGTAAGAAAGTTAACCTCAGTAGGATGCTAGATGTCCTCAGGAAGGAGAAGGTTAACCTCAAGAAACTCTGGGAGCAGAATGATGACATCAAAAATAAGCTAGatgaacacaaGGATAAGTTAGATGACCTCACTAAGATGCTAGATGTCCTCATGAAGGAGAGGGATGAAACCGAGGGACTCTGTAACCAGAGTGAGGGAACTCGTTAAGGTGAAGTAGGATGTGACTCTAGACCAGGGATACTCAAGTCCTATTTGAGACGGACCGGTGACACACATTTCCTAGGTGACAAAGGATCAGATGGAGAATCAGCGTAGTATCAACCCCCCAACTCACAACCCCAcgcaaactgttcacacccctcttgttggcgaCGAGaacatgttgcagttttaaagctgatttcctgcaattctacacattttgcatggGGGCAGAGATTTCTTTAGCTGTTTTATAGCTGATTTCCTGCAATTCTCCACATTCCTCCATGTCTTATGTGTGTTTATATGATACCAGGGGTCAAAGCCCGAcctattaaaaaaataaagagcACATTCTGCTCCTTCACTGAGAAACGCTCCATTCTTCATCCCTGGTATTATTGATAGTCTCTCAGTGGTCATCTGTCCTGTAGAcgtcactgactgactgttttaAAACAAACCAGGCTGGTATAAACAGTTAGCAATAGGAGAgagtttatttaacctttatttaactaggcaagtcagttaagaacaaattcttattttcaatgaaggcctaggaacagtgggttaactgtattgttcaagggcagaacgacagatttttacagctcagggattcagctcagggattcaatcttgcaaccttctggttactagtccaacactctaaccactaggctacctgcctctaaccactaggctacctgtacatGAGTCCTCAGATTTCCTGtcagtctttgttgttgttgtagactGGGCCAGTTGATTGTTTATTGGATAGGACAGAGAGGTAAAGGTAGGAATGTTGAAAGATAAATTGGATGGTTCTGAACGCCTGCTGGTACTGGACTATCCCAGACCACTGATTTCTTGTCAATGTTTGACGAATCTTTGACGTGTCTTTCACCCGTCCCTTGGACTGTTCTGTCTTGAGGAGAATGTGCTACATATTTTTATTCTCTGTGTTTTCTAACAGTATTTGTTATGTATCCATTCTGCTGTGTGCTTCAATATTTAGGTAAGAATTTAGCAGCAACACAAAATACATGTGTATGAATGTATCATTTGATTATAACATtttccaaataaagtgtgattaAAAGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107461 lncRNA downstream 5415 86553056 ~ 86596907 (-) False G97227
TU107459 lncRNA downstream 7136 86553056 ~ 86595186 (-) False G97227
TU107457 lncRNA downstream 7136 86594340 ~ 86595186 (-) True G97227
TU107504 lncRNA downstream 21286 86580000 ~ 86581036 (-) True G97256
TU107430 lncRNA downstream 22522 86577760 ~ 86579800 (-) True G97211
TU107475 lncRNA upstream 57142 86707285 ~ 86707852 (-) True G97237
TU107524 lncRNA upstream 80776 86730919 ~ 86731550 (-) False LOC118966041
TU107525 lncRNA upstream 80776 86730919 ~ 86731236 (-) False LOC118966041
TU107526 lncRNA upstream 80776 86730919 ~ 86732370 (-) False LOC118966041
TU107528 lncRNA upstream 80776 86730919 ~ 86731550 (-) False LOC118966041
XM_036987786.1 mRNA downstream 200158 86353680 ~ 86402164 (-) True LOC110532855
XM_036987797.1 mRNA downstream 252552 86299040 ~ 86349770 (-) True LOC110531245
XM_036987774.1 mRNA downstream 314805 86235239 ~ 86287517 (-) True LOC110531234
XM_036987761.1 mRNA downstream 378370 86222196 ~ 86223952 (-) True LOC110513354
XM_036987692.1 mRNA downstream 555146 85892523 ~ 86047176 (-) False LOC110531925
XM_036987911.1 mRNA upstream 13372 86663515 ~ 86698225 (-) False LOC118936335
XR_005053238.1 mRNA upstream 21363 86671506 ~ 86698224 (-) False LOC118936335
XR_005053239.1 mRNA upstream 21363 86671506 ~ 86698224 (-) False LOC118936335
XR_005053240.1 mRNA upstream 21363 86671506 ~ 86698224 (-) False LOC118936335
XR_005053236.1 mRNA upstream 21363 86671506 ~ 86698225 (-) False LOC118936335
TU107372 other downstream 209233 86392561 ~ 86393089 (-) True G97176
TU107204 other downstream 450983 86146009 ~ 86151339 (-) False G97047
TU105927 other downstream 1250556 85346858 ~ 85351766 (-) False G96002
TU105929 other downstream 1250556 85346858 ~ 85351766 (-) True G96002
TU105902 other downstream 1341790 85258396 ~ 85260532 (-) True LOC110510598
TU107596 other upstream 136914 86787057 ~ 86788052 (-) True G97308
TU107871 other upstream 644214 87294357 ~ 87294999 (-) True G97535
TU108928 other upstream 1263159 87913302 ~ 87915900 (-) False LOC110531505
TU109033 other upstream 1413319 88063462 ~ 88064854 (-) False pex13
TU109035 other upstream 1413319 88063462 ~ 88064914 (-) True pex13

Expression Profile