RNA id: XR_005053241.1



Basic Information


Item Value
RNA id XR_005053241.1
length 703
RNA type mRNA
GC content 0.41
exon number 4
gene id LOC118966041
representative False

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 86730919 ~ 86732537 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ccacatagttaaactacataatgctggggtgcaacactacccacatagttaaactacataatgatGGGGTGGTccactacccacatagttaaacaCTTCAGGACAGGTATATTCTTGTCCCAGACAGTTTGTAATAGACCACTAATACTTCAGGACAGGTGATTCTTGTCCCAGACAGTTTGTAATAGACCACTAATACTTCAGGACAGGTGATTCTTGTCCCAGACAGTTTGTAATAGACCACTAATACTTCAGGACAGGTGATTCTTGTCCCAGACAGTTTGTAATAGACCACTAATACTTCAGGACAGGTGGATTCTTGTCCCAGACAGTTTGTAATAGACCACTAATACTTCAGGACAGGTGATTCTTGTCCCAGACAGTTTGTAATAGACCACTAATACTTCAGGACAGGTGGATTCTTGTCCCAGACAGTTTGTAATAGACCACTAATACTTCAGGACAGGTGGATTCTTGTCCCAGACAGTTTGTAATAGACCACTAATACTTCAGGACAGGTGGATTCTTGTCCCAGACAGTTTGTAATAGACCACTAATACTTCAGGACAGGTGAATTCTTGTCCCAGACAGTTTGTAATAGACCACTAATACTTCAGGACAGGTGAATTCTTGTCCCAGACAGTTTGTAATAGACCACTAATACTTCAGGACAGGTGAATTCTTGTCCCAGACAGTTTGTAAT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU107474 lncRNA downstream 23079 86581649 ~ 86707852 (-) False G97237
TU107477 lncRNA downstream 23079 86581649 ~ 86707852 (-) False G97237
TU107478 lncRNA downstream 23079 86581649 ~ 86707852 (-) False G97237
TU107475 lncRNA downstream 23079 86707285 ~ 86707852 (-) True G97237
TU107423 lncRNA downstream 55163 86602365 ~ 86675768 (-) False G97209
TU107541 lncRNA upstream 4740 86737277 ~ 86739833 (-) False G97278
TU107542 lncRNA upstream 4740 86737277 ~ 86739833 (-) False G97278
TU107554 lncRNA upstream 4740 86737277 ~ 86739833 (-) True G97278
TU107567 lncRNA upstream 21208 86753745 ~ 86756765 (-) False G97283
TU107568 lncRNA upstream 21208 86753745 ~ 86756765 (-) False G97283
XM_036987911.1 mRNA downstream 32706 86663515 ~ 86698225 (-) False LOC118936335
XR_005053236.1 mRNA downstream 32706 86671506 ~ 86698225 (-) False LOC118936335
XM_036987915.1 mRNA downstream 32706 86671590 ~ 86698225 (-) False LOC118936335
XR_005053237.1 mRNA downstream 32706 86671647 ~ 86698225 (-) True LOC118936335
XR_005053238.1 mRNA downstream 32707 86671506 ~ 86698224 (-) False LOC118936335
XM_036990001.1 mRNA upstream 51287 86783824 ~ 86864120 (-) False LOC110518258
XM_036987970.1 mRNA upstream 193902 86926439 ~ 86954561 (-) True LOC118966043
XM_036990006.1 mRNA upstream 225361 86957898 ~ 87049090 (-) True LOC110532959
XM_036990012.1 mRNA upstream 429740 87162277 ~ 87166534 (-) True LOC118966727
XM_036990021.1 mRNA upstream 435348 87167885 ~ 87204885 (-) True LOC118966728
TU107498 other downstream 107620 86566477 ~ 86623311 (-) True G97251
TU107372 other downstream 337842 86392561 ~ 86393089 (-) True G97176
TU107204 other downstream 579592 86146009 ~ 86151339 (-) False G97047
TU105927 other downstream 1379165 85346858 ~ 85351766 (-) False G96002
TU107596 other upstream 54520 86787057 ~ 86788052 (-) True G97308
TU107871 other upstream 561820 87294357 ~ 87294999 (-) True G97535
TU108928 other upstream 1180765 87913302 ~ 87915900 (-) False LOC110531505
TU109033 other upstream 1330925 88063462 ~ 88064854 (-) False pex13
TU109035 other upstream 1330925 88063462 ~ 88064914 (-) True pex13

Expression Profile