RNA id: XM_036987960.1


Basic Information

Item Value
RNA id XM_036987960.1
length 6557
RNA type mRNA
GC content 0.51
exon number 19
gene id LOC110516875
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 86764287 ~ 86783717 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atgactcatgagttcccattggaaacgacacgcggtggtctatcttgggttagttattaAAATCTTCGGAGTAGCTTGCAGGAGGCAGGGGCGAATGGCGGCGGTGCGCAGCGAGGAAGTGTCGGGGATTTAGCTAAAACACTGTAAAGCTACTAGAATCGCTCCGGAATGCAGTGGCGTTGACACAGTAGAGGAATACTCTTTCTAGATATTATAAACGGAGCTAAACACATTGTGTTTGCAGTCCTGTAATGAAGTTATCTGGAGCTGTCAGTCCTGACAAGCTGACAGGAAGGGAACAGCATTCATGGATGTAGTGGACACTTTCAACCATTTGATTCCCAGTGACCAGTTGGATGACTCCATGCTGATAGGGCAGAACTTGGAATGTGAAGCAAGTAATGACTTTGGAACAGGTGTCGACCAGCTGGGAGACTCACTGAGGAACATGCTTAGTGATAAAGATCCCATGTTTGGATCTGCAAGTTCACACTTCAATATCTTAGATAATGAAGACGCCAACTTCCAGATCGCCGAAGCAACAGTTGCAGATGTTGATGTTGGTGCAACAGAGGGTATCCTTAGTACCGCTGGTGGTGGGTTGGCTGGTACAGAGACTCCGCCAGTCAAACGGTCTGTTGGCAGACCCAGGAAATACGCATTAGGAGTTACCCCAGAGCGAAGTGCAGGCAGAGGGTCTTCAAACAACAAAAAGCCCCCGGGAAAACCTGGGAGACCTAGAAAGAAGTCCACTCTGAGTGAGAAGATCACTACTGCTGATGAATTAAGGAGAGAGCTTCACCTGGGTGACGGCAGGGTGAATATCAACGACCTGGACTTGGGCTCGTCGATGAACCCCGTCGTTGTGTTACAGAGGTTGACGGTCACTTTCGGGGGTTTCAAAATCGAGCTTCTCCCGGGACCCTCCTTTACCGCTTTCACATCAGCTGAAAACACTGACGAATGTTATGAGGATGGCTCGCTGTACGGTGAAGGGATGGAATACACTATGGTGCAAGAGGAACCGTTACACATACAGAATCCCACTGCAGGGAGTGGAGGGGGCGTGGGTGCTGCTCAGCTCTTGGTGAAGTACTGTGCTGACGACTTGCCCCTAGGGCTAGGACCTTACGTCAACCCCAATGACGTTCAGGCCTCCAACGGGGCGCTTCCAGGTAGTCCTTGCTTGGTCGAGACCAAACTCGACGACCAAAGTGATTCTCAGAAGCATGATCCAGCGGTGGTGAGGAAAGATGCCAGCATCAAGAAAGAAGCGCAGCAGCACCTGCCAAACAGCAAAGTTCCTACCACTAATAATCCAGCCAAAAAGCAGCAGCCTAAGCTGAAGCAGTCAACACTGTCCTCCGCTAAGAACAAGCACCTGTTAGCTGGTAAGGGGCCCAAAGGAACCCAACAACAAGCCCTGGGGAAGAAGCTCCACCAGAGAGGCAACATGCACAAGATGGACGAAATGAAAGCCAAACAAGTCATCGTGTCCTTGAAAAGGCGAGGTGAATTCAACCCAGCTCAACCCGGCCCTAAGATTCGGAGGACGCAAGACGGACGTCCTGTGAAACTAAAGCAGAGGTTACCTGACGTGGGCCGCGGCGGTCCGGTCAAAAAAACACTGCCGTCTGGAAAGCGTCCTCCTGGTATGTCCGCAGGGACGACGATTACAACCAAACCGTCTAACTCTCACGTGACCGACACCCAACCACAACCCCAGTTTGGCTGGACACCGTGTAAACGTGCCAATCCTCAGAAGGAGACAtcggaggaggagaaggaggaggagcaagacGAGCCTAAAGTGAAGAAGCCAGACAAGTGTCTTCAGAAACAGAGAAGCAGGAACGTCAGCAGAAGCATCTCCGTGGAGGAACCACAGCTCTTCATCCCCGACAACGCTCCTGCCGTCTCGAAGAAGGAAACCAGTGAAGAAGAACAGGCTAAAGAATCTGGGAAGGGACCAGAAAAGGAACCTGCAAATAGTGAGACCGTTGTGTGGGATCCAAACAAGAACTGTGGATTGTGCAATAAACCACATAGTAACAAGTTCATGGTGGGCTGTGGGCACTGTGATGACTGGTTCCATGGCGACTGTGTTGGTCTGGACCTGGCCAAGGTGAAGCAGATGGAAGGGGGGGACCAGGAGTATGTCTGTCTGCAGTGCTGTACCAAGGACAAGTACACCACCACCAAGGAGCCAGGCGGTGCTGTGCAGGGGGAGGCCAGGGCAGAGGGACAGCAGAAGCCCTCTGAGACCCAGGACAACAAGATGGCCGCAAAGCAGAAACAGCCGTCCCCACATCCTGTCACCTCCGGGGGAGTCAGGCCCTTCAGAAAGGACTCTGTGGAAAGAAGACAGTCGACTGAAGTCAAAGATTCTATGCAGAAATCAGGAGTGTCAGTCAAACAGGAGACCAAGAGGCCCAAGGTGTCGTCTCCCTCCTCTAAGAAACCGGTGTCTGTTGACCAGATCAGACGGAGCGTCCGTGACGCCCTGAAGGACATCCTCCTGAAGAGGCTGAAGGAGTCTGATTTCCAGGCGTCACCAGAGAAGGCTGCTGAGGTGGCCAAGAAGACTGAGAGAGAGCTGTTTGCCTTCTACAGAGACACCGACTGCAAATACAAGAGCAAGTACCGGAGCTTGATGTTCAACCTCAAAGACACCAAAAACAATGTGTTATTCAAGAGGGTTCTGAAAGGGGAGATTTCTCCTGGCACTTTGATAAGGATGAGTCCTGAGGAACTGGCCTCAAAAGAACTGGCtgcatggagacagagagagaatcgaCACgcgattgagatgattgagaaggagcagagagaggcggagaggcgACCCATCACCAAGATCACACAcaaaggagagatagagattgaGAGCCAGGAGTCTGGGAAGGCACCAGAAGCCATAGAGCCCGAGCCAGAGCCTGTGGCTGCTTCCAAAGTGACAGAGGAGCCAGTGGAAGTTCCCCAAGAGAAGACGTTGTCGACAACAACCGAGAGCGTCAATATTTTCCAAGATACAACCAGTCTGCATAAGACTCACCTGTTTGACCTCAACTGTAAGATCTGCACAGGACGTATGGCTCCACCTGTGGAGGAGGCTCCTACCAAAGTGGTGAAAGTGGCCACTAGTGTAGTGAGGAGACGGTCTGCTACCAGCACTACAGAGGCAGTGACCAAGAACACACAGTCTACTACCTCCAGCACTACAGAGGGACAGACCACGAACACACCGTCTGCCACCACTACCtctacagagggagagacaccGTCCTCCTCTGCTAAGGACGACGACCTTCACCTCAAAGTCCTAGAGGAGAGCCTCCTCAGCGCCAAAACCTTCTCCAACTACAAGGGGAGGTCAGTGTCTATGAGTGGCAGAGATGGCGAGGCTTCCTTCCTGTCCAACCTGCAGCCTCTATGGAGAGGGCTTGTCAACATGCCTGCTGTGGCCAAGCTCCTCACTAAAGCCTTCCCTGTATCTGGTGTCCTGGACCACCTGACAGAGGATCTGCCGGAGAGTTTCCAGATGGGTGGGAGGATCTCCCCACAGATCGTATGGGACTACCTGGACAAGATCCGAGCCACCGGAACAAAGGAGGTGTGTTTGATTCGTTTTTCCCCTGAGACCGACGAGGATGAGATCCACTACACTCTGCTCTATGCCTACTTCAGTAGCCGTAAACGCTTCGGCGTGGTCGCCAACAACTTGAAACAAGTCAAAGACATGTATCTCATCCCCTTGGGTGCTATTGAGAAAGTCCCACACCAATTGGTTCCCTTCGATGGCCCAGGACTGGAAAACAACCGCCCCAACCTCCTGCTGGGTCTGATCATCCGCCAGAGGCCTAAACGGGACTTCCTGCCCGTCGACATCAACGAAACGGCCAGGTTCATACCGGAGAGCAAACCCGAGACAGCGACGACTACGGTTACTGtaaacaacaaagaagttacccgggaggaggaggaggagaactcttacatctcctctctgtgtgcttCAAGTagtaaagaaagagacagagaagagatacCATTGCTGAACACCGCTGAGGAAGAAGTGGTCACAGCAGAACAGTCTAGTACAGACATCTCTGAGAAAGCTGAAGGTGAAGATACTGAAGAGGGGTACCAACCACTACGTTTCCTTCCGGGGGTGTTGCGTAGTTGGGGCGGGGAGCTTCTGCCCCTGCCAGACTTCTCAGGTAACCCTCCACTGCTGGGTGATGATGGTCGAGAGCCCTCGGCTCCACAGACCTCCAAGGCTGACGGAGGAGCAGCAGCGACCACTCCAGGAAGCGCCACCACCACTAAGAGTCCCAGCGCTGGTGCTCACAGACAGACTGGTTTTGTCATCAAGAAGAGGGAACCCAAAACAGTCAAAGCAGAGGAACCTGTGTCTTCCAGCTTGGCTGAAACGTCTACCGCTAACAACAACGCGTTGGCGAAAGAGGAGGGTGTGGCTTACCGTGGCCCGTCGGTCTCTCTGAAAGACAAACCTCCAGACGTCTCGACAGAGTCGTTCCTGGCCAGCCTCTCCACGGATCCCAACACAGACGGCTCCTTAAACAAAGGAGATTCGGCGTTGTGCGAAAAGGACAAATCCAAAGAAGAGAAGACACCTACTCTCTTGTCTCCTACAGCCACGTCCAACTCTTCTGTCGAGGAAAGCGCCCCCACACCAAAACCCCTTCCGAGTGGAATCCTGAAGAAAAGCTCTGCGTATTCCAATATGACTGAAGAACCAACTGCTGTCCAATCAGCAGGATCACAGGATCACCCCCAACCTGTTCCTGTCCTGACCACCAGGAAGTATCGTCCAATGGCAGCTCAACACGGATACCCCTCCCACCATCACCAGACTGGCTACAGACGCCCACCTCCAGACCATGGCCCACTACAGGTTGGTCCCTATGGTCCCATCCCCCTCCAGCCTGGAGGACCTCCTGTAGACTTCCAGTACCAGCCAGCACCACCTGTCCCCCCCTTCGGTAACACTGCACCGCCACCTTTCCAGCACCCGCCCCAGCTACCCACCAACTTCAGCTACCCTACTGGCCCCCCACCACCCATGATGTACCCGCCACCTCACGACCCACAGATGCAGAATCATGCTGGAATAACACAGTGGGCTCAACCTGGTCCAGGTCCCACATCTCCCAACTCTTTCCCCGGGGGCCTACCGTTAGCTTACGGTGGTGACCCTCAGAGGTTTGCCTCTGCTGAATCGTCCAACCTGAACCTGCCCCCATCCGCCGCTGCCAAAGAGGACCAGAAGGGGGCAGCAGAGAGGATTCTGTACAGCAACCCCTGGGACAGGCAGCCCGGGTCGGGCCACAAGAAGGAGGACCGGGACCAGTACGGGAGACACCGGCACCACAGTGAGTCCCGTCACGGAGAGAAGAGCCGGAACCACAGCCAAGAGGGGGGAAAGAAACGAGATAGAAgccggagcagagagagagaccggagtAAAGACTCTTCTTCTCACCACAGAGGGAGCCGGCACCACTCTAAAGACGAGCGCCACGGTCACAGCGAGAGGAGGAAAGAACGGCACCATAGCGACGGTGACCACGGGAACCGTCACAAACACAGCAGGAGAGACTCTGATTATGAGAAATCGAGGAGAAGTTCCAAAGACAGTCACTCGTGAGTTGTTTTGTACGACCCGCCCCGAGATGGTCGACCCTACAACAGTTTTAGTGGCATTGTCCCTTTTTATATATGTTCTTTTTAAAATACAGTAGGATTATTAACACATTCTGAGATCTGCTTTCTTAAAAACCAACCGTTAAGGCTTTTGAGGTGATATTTCAAGTTTTGAAAAGCTCCAGTTTTTTTAAAGTGTTAATTTGACTGTATATTTCTGCATGTCACATGGTGACTTGGTGCACTGAGCATTGTGCTCTGATATAGATCACAACCAGTGGTTAAAGGGATAGCTCAATGAtttgacatatgtttccataccTTTTAAAAAGCAGTCTATGGATAAGGAGGCAGCAATGACTTGGGCATGATATTTAACACATGCTAAGCAGGGTAGATTGACTGAGACAGGGAAATGTTGCTAATACTTAGTGTGGATTGTAGTCGTTCCCCTCTTGTCCATAGATTGTTTTCAGGGTAAAGAAACAAATCTTTTAATATGTGAAATCGCTGAACTGTTCTTTGAATGTTTTCTATAGCATGAAACCCAAAATAACAGGCATACCCAGATGGACTGTTGGAGTATAGATGGAGGGGGAGTTCTGGCGACTTCAGCAGTTTCACATGAATTtaatacagaggagagagaaactaACTATTTTGAGTAgcagaaaacaacaaaacattttaatTAAAAGCAGCTTCTCTTATTCTGTTTttttccattttatttttttaaattgctatacagaaataaattgttttgttttttttctatcGACAAATATTGTCTATGTACATTTTGGCTTGTCATGTACATTCGAAAATCAAGTGTGCCTTCTGCACCGTGTTCATGTACAGCTGGTAATAAAGGTGATCTTTTTATTGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106852 lncRNA upstream 2802 86761172 ~ 86761485 (+) True G96732
TU106851 lncRNA upstream 4268 86758882 ~ 86760019 (+) True G96731
TU106847 lncRNA upstream 28242 86735845 ~ 86736045 (+) True G96727
TU106846 lncRNA upstream 28669 86735229 ~ 86735618 (+) True G96726
TU106845 lncRNA upstream 29472 86732382 ~ 86734815 (+) True G96725
TU106860 lncRNA downstream 6187 86789904 ~ 86790129 (+) True G96740
TU106885 lncRNA downstream 40871 86824588 ~ 86824907 (+) True G96761
TU106886 lncRNA downstream 41359 86825076 ~ 86825286 (+) True G96762
TU106896 lncRNA downstream 53614 86837331 ~ 86837633 (+) True G96772
TU106903 lncRNA downstream 61098 86844815 ~ 86845434 (+) True G96777
XM_036987946.1 mRNA upstream 7510 86736884 ~ 86756777 (+) True LOC110531632
XM_036987899.1 mRNA upstream 168716 86562981 ~ 86595571 (+) False LOC118966035
NM_001124330.1 mRNA downstream 587066 87370783 ~ 87373089 (+) True LOC100135993
XM_036987979.1 mRNA downstream 692787 87476504 ~ 87645034 (+) False LOC118966047
XM_036987993.1 mRNA downstream 692787 87476504 ~ 87645034 (+) False LOC118966047
XM_036987983.1 mRNA downstream 692787 87476504 ~ 87645035 (+) False LOC118966047
XM_036987989.1 mRNA downstream 692787 87476504 ~ 87645035 (+) False LOC118966047
TU106748 other upstream 268595 86492069 ~ 86495692 (+) False LOC118966033
TU106719 other upstream 303445 86460228 ~ 86460842 (+) False G96630
TU106659 other upstream 324815 86430202 ~ 86439472 (+) False LOC118966024
TU106660 other upstream 324815 86430202 ~ 86439472 (+) False LOC118966024
TU106654 other upstream 351075 86411207 ~ 86413212 (+) True G96577
TU108152 other downstream 973324 87757041 ~ 87757546 (+) True G97752
TU108449 other downstream 1137290 87921007 ~ 87922414 (+) False LOC118966052
TU108569 other downstream 1347321 88131038 ~ 88144441 (+) False G98104
TU108570 other downstream 1347321 88131038 ~ 88144441 (+) False G98104
TU108836 other downstream 1853333 88637050 ~ 88744413 (+) True LOC118966060

Expression Profile