RNA id: XM_036990001.1


Basic Information

Item Value
RNA id XM_036990001.1
length 3252
RNA type mRNA
GC content 0.53
exon number 11
gene id LOC110518258
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 86783824 ~ 86864120 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGAAGTATGCAGTAGTGTTGGGGCCTATATTCCTGGGGGACGTCCCCTCCCATAGGGATCAGCCTGCCAGCACCAGGGAGGTGACGGGTTTTGTAGGCTGTATCAGGGAGCTGCAGGTCAACAATAAGGACATCTACATAACAGGAGAGGCACTGGGAGGGAGGAACATCCACAACTGTGATACACCTGTCTGTCAGCACCTGCCCTGCCGCAATGGAGGCACCTGTGTCAGTGATGCAGAGGACTGGTTCTGTGAGTGCCCTCCTCTCTACTCTGGTCGGCTCTGCCAGTTCACAGCCTGTGAGTGGAGCCCCTGTGGTCACGGAGCCACCTGTATCCCCAAGTCCCACCAGGaagctgtgtgtctctgcccTTACGGAAGACAGGGCCTGCTGTGTGATGATGCCATCAACATCACCCGGGCCAGGTTCAGTGGGAATGATGAGTTTGGGTACACCTCGTTCATAGCGTACTCTTCCATCCCCAGTCTCAGTGTCTACTACGAGTTCCAACTGAAACTAACGTTCGCCGACAGAGCCTCAGCTCTGAAGGACAACCTCATCCTCTTCTCTGGACAGAAAGGACAGGGAATTGATGGAGATGACTTCCTAGTTCTGGGGGTTCGGAATGGCAGAATTGTTCACAAGTTCAACCTTGGATCTGGTGTGGGAACCATGGTCAGCGACCGGCTGAACCGTGAGATCGATATCCACACTGTGAACTTTGGCAGATCTAAGAGAACAGGATGGTTAAAGGTGGACGGACAGAGAAACAGGACAGGCTCTTCTCCAGGCCACCTGGCAGGTCTCAACGCGCAAAGCCAAGTCTTTGTAGGAGGATATAATGAATATACTCCTGAACTACTGCCCCTCGGATCCAGGTTTCGCAATGGCTTTCAAGGTTGCATATTTAATCTGGAGTTTCGGACGAGGCGAGACGGGAAGTTCATAGCGTTGGGGAAGCCTGAGGGTCGTCCGAACTCTGGCCGTAGCGTGGGTCAGTGCGGGGTCACACCCTGCACCCTGGTGACATGCAGAAATGGAGGAACCTGCGTGGACTCTGGATCCTCTGTCTAcTGCCAGTGCCCATTCGGCTGGAAGGGAGCACTCTGCTCTGAGACCGTGTCTGTGTGCGACGCTGAACACCGTCCCCCTCCCTTGTGTGCCCGTGGTTCCACCTGCGTACCCCTTCCAGACGGATACACCTGCCTCTGCCCCTTGGGCACCGGCGGACTGCACTGTCAGCAAGCCATGGCCATCAGTGACCCGTTCTTCAGCGGTAACCAGTCATCCTGGATGTCTTTCCCTCCAGTCAGCATCAGACACAGGACAGACCTCAGGCTGCAGTTCCAGACTCTGTCACCAGAGGGCATCGTCTTCTACACAGCACAGCACCTCAGTGCCCGGGCCGGAGACTTCTTCTGTGTGTCCCTGACATCGGGGTTGGTCCAGCTGCGTTACAACCTGGGTTCTGGAACCAACGTGTTACAGTCCACTAACAGAGTGGACACCAGCGGAGGGACCTGGCACACGGTGAGGGCAGGCAGGACAGGCCACCAGGGGTACCTGGTTCTGGACGGGCTGGAGGTGAAGCAGAAcgacacagagggagggatgtCCACTCTGGACGTGGCCACGGACCTCTTCGTCGGCGGGGTCTCTGACTTGAGCTTCATCTCTACGTTTTCCGTGGAGAACGAGCCTGTGGGTTTTACCGGAGGCGTGAGAGAGCTCGTCTTAAACGGACATGACTTTGACCTGACGGCGACAGGGGCCCTGGGAGGGGCCAATGTGGGCGACTGGGACGGGACTGCGTGCGGGTACAAGGTGTGCCAGAACGGCGGCCGCTGTACTGCGTTGAGCGGCGCCGATTCGGACTCGTTTATGTGCACCTGCCCTCCTCGGTGGACGGGTCCTGTGTGTAACCAGTCGGTGTATTGTGTCAATAACCTGTGTCAACATGAGTCATTGTGTTTCTCTGATCTTGTGACTGGCTCATACGACTGTTTCTGTCCTCTCGGGTGGGAGGGGAGGTACTGCGATAAGCAGGTCGGCCTATCCATGACCACTCTGAAGTTCGTTGGGAAATCATATCTGAAATACAGGGATCCTAAATTCAACACACGGAATCTGAGGTACACGCAGGTTTCGTTTAACTTTACAGCCAGCGGGAACGAAGGGTTGATTCTGTGGATGGGAAGAGCGGAGCACGATGACGACGATTACCTTGCTGTCGGGCTTCAGGCGGGCCACCTCAAAATCGCAGTCAACCTCGGAGAGAGGCTCTCCCTCCCGCTCACTTTCAGAAACGTCACGTTGTGTTGCAACAAATGGCATTATTTATCGATCTCTCTGAACAGTACCCTTATTCAGGTGTTCCTGGGTGACGAGAGGGTCCTTTTCGAAGACGTGGACCCCTTCGAGCGTTACGTTGCCATGAATTACGGGGGTCTGTTGTACTTGGGAGGGTTCGAGTTGCACAGGAACATCTCAACAGTGACGTCTGGGCTGTTTACCAAAGGATTTGTGGGAGATCTTAAAGACGTGCGTTTGTATCAGGACCCCAGACAACTGCAGTTCCTCCAAAACAGCGAAGGATTTAATGTTCACAAAAGTAATGAGTAGTTCTGTAACTTGTGAAAATAGGTGATTCATGTGTTGTGATAAAGAAATTCATAGAATTGGTTTCTAGAATGTAATAATTTAAGTTCTTTATATCCAAGTTGTATTCATTatgcaccaaatggaagaaaacacaAACAGGGAGGACAACTTCCTGGAAGTGTTAATAAGCGTTtgtgttgttttttaaaatccattGTGTGCCCTGATGAACACAACTCTGTTGAAACTGCCAACTCCTCAGTAGATGGTTTATACCCTGAGTAttccaaacattaagaacaccttcctaatattgagttgccccctccctttcaccctcagaacagcctcaattctttggggcatggactccacaaggctactggcccatgtggactccaatgattcccacagttgtgtcaagtggctggatgtcctttggctggtggaccattattgatacacacaggaaactgttgagcatgaacaacccagcagcgttgcacttcttgacacacaagctggtgtgcctggcacctactacgcCATTCAAAGGCACAAATCTTtagtcttgtccattcaccctcaatggcacacacacaacccacgtCTCACCTGTCtcctacactgattgaagagaAACTccat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107576 lncRNA downstream 17839 86765724 ~ 86765985 (-) True G97290
TU107573 lncRNA downstream 22995 86760188 ~ 86760829 (-) True G97287
TU107571 lncRNA downstream 26463 86757060 ~ 86757361 (-) True G97285
TU107567 lncRNA downstream 27059 86753745 ~ 86756765 (-) False G97283
TU107568 lncRNA downstream 27059 86753745 ~ 86756765 (-) False G97283
TU107677 lncRNA upstream 49436 86913556 ~ 87104621 (-) True G97377
TU107679 lncRNA upstream 49704 86913824 ~ 86914345 (-) True G97379
TU107701 lncRNA upstream 105703 86969823 ~ 86997815 (-) True G97401
TU107752 lncRNA upstream 174870 87038990 ~ 87039452 (-) True G97440
TU107774 lncRNA upstream 221516 87085636 ~ 87086121 (-) True G97461
XR_005053241.1 mRNA downstream 51287 86730931 ~ 86732537 (-) False LOC118966041
XR_005053236.1 mRNA downstream 85599 86671506 ~ 86698225 (-) False LOC118936335
XM_036987915.1 mRNA downstream 85599 86671590 ~ 86698225 (-) False LOC118936335
XR_005053237.1 mRNA downstream 85599 86671647 ~ 86698225 (-) True LOC118936335
XR_005053239.1 mRNA downstream 85600 86671506 ~ 86698224 (-) False LOC118936335
XM_036987970.1 mRNA upstream 62319 86926439 ~ 86954561 (-) True LOC118966043
XM_036990006.1 mRNA upstream 93778 86957898 ~ 87049090 (-) True LOC110532959
XM_036990012.1 mRNA upstream 298157 87162277 ~ 87166534 (-) True LOC118966727
XM_036990021.1 mRNA upstream 303765 87167885 ~ 87204885 (-) True LOC118966728
XM_036990028.1 mRNA upstream 343344 87207464 ~ 87230079 (-) True LOC118966729
TU107498 other downstream 160513 86566477 ~ 86623311 (-) True G97251
TU107372 other downstream 390735 86392561 ~ 86393089 (-) True G97176
TU107204 other downstream 632485 86146009 ~ 86151339 (-) False G97047
TU105927 other downstream 1432058 85346858 ~ 85351766 (-) False G96002
TU107871 other upstream 430237 87294357 ~ 87294999 (-) True G97535
TU108928 other upstream 1049182 87913302 ~ 87915900 (-) False LOC110531505
TU109033 other upstream 1199342 88063462 ~ 88064854 (-) False pex13
TU109035 other upstream 1199342 88063462 ~ 88064914 (-) True pex13
TU109129 other upstream 1354709 88218829 ~ 88220804 (-) False G98510

Expression Profile