RNA id: XM_036990006.1


Basic Information

Item Value
RNA id XM_036990006.1
length 2049
RNA type mRNA
GC content 0.55
exon number 14
gene id LOC110532959
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 86957898 ~ 87049090 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCCCAGCTGGATATTTTGGCACCCTGTGTGACCTGGATATTAATGAGTGTGAAGTTTCACCTTGCCTTCACGAGGCCGTCTGTATCAACAAACCTGGAGGCTTCAAGTGTGTCTGTCGCCCTGGAAACGCAGGGACGTGGTGTGAACTGAGCATAGACGAGTGTGTGTCGAACCCGTGCCAAAACGGCGGGAGCTGCGTGGATGGTCCCAATCGATACCAATGCTTATGTGCTGGAGGCTTCATGGGTTTCCATTGCGAGACCAACTTTGATGAATGCATGTCGGGCCCCTGTCTTCACGGGAGGTGCATTGATGGAGTGgatgtgtattactgtcagtgtGAATTGGGATGGACTGGTGCCAGATGTGAAATGAACATTGATGAGTGTTCTTCCAGTCCGTGTCTGAATGGTGGCTCCTGTGTGGACTTGATTGATAAATATGCGTGTTTCTGCCTGGATGGATACACTGGAAAGAACTGTGACATTGACATAGACGTCTGTCTCGAAACCCCCACCAATGTCACCCTGTGTTTAAATGGAGGGACTTGTCTCGATGGCCAAGGCTCCAATTTCACCTGCAGTTGTCCAGCAGGTTTCATAGGGGACTTCTGTGAGATGGACGTTAATGAATGCTGTTCAGATCCATGTCTCCACGGGGCTATCTGCCGAGACCTGCTTAACGGATACCTCTGTCACTGCAGGGCAGGTTGGACAGGCCTTCACTGTGAGTTGGACATTAATGAGTGCCTTCCGCAGCCCTGCAACCAAGGGATGTGCATCCAGAACGAGCCTGGCTACGGCTACACCTGTTTCTGTCGTCCTGGATTTGTGGGGAGGAACTGTGAGCACAATTACGATGACTGCCTGCTCCAGCCGTGTCCGGGAGGATCCTCCTGTGTTGATGGTATCAACGAGGTCAGCTGTCAGCCAGTCGAGGGAGACATGTCCTCTGTGCCCTGGGAGCCTTCTATGACACAAACCCCTCAGGGATCCCTGCTCACCACGTCACCAATGTCACCAGTGTCACCgcggctgaagaaatttggcttgccaCCCCAGGTCCTCTCCAAATACTGccgctgcaccattgagagtgtcctgaccggttgcatcatggCCTGGTATGGGAATTGCTCCATCTACAACCGCAAGGCCAtccagcgggtggtgaagatggcccagtacatcactgggaccgtggcCCTCCGGCGGGTGGggaagacggcccagtacatcactgggaccttGGCCCTCCGGCGGGTGTtgaagacggcccagtacatcactgggaccgtggcCCTCCGGCGGacggcccagtacatcactgggaccgtggcCCTCCGGcgggtggtgaagacggcccagtacatcactgggaccgtggcCCTCCCGCGGGTGGggaagacggcccagtacatcactgggaccgtggcCCTCCGGCGGGTGGGgaagatggcccaGGTATTGGTCCTATTCCTGTCCAGAGAGAAGGAGGACTCCAGCTACGTCCAGTACTCTGGTAATTCCTACTTGGAGTTTGAGGGCATAGACCTCGGTGCCAACAACAACATCACTGTGAGGTTTCAGACCCAGGAGGCCCAGGGGACCATTCTGTACGTTGACCAAGGAGCAGTGACCAGGGGCTTCTTTTTCATGAAACTCTTCATCCAGGAGGGAATGCTACAGTATGTATTCTCCTGTAACCGAGAGGAAGGGATCAGAAGGATCAATACATCCATCCGTGTTGACGACGGCAATCCATACATCGTCTACGTCAGACAACAACTGGCGCCATGCGAAGCGGAGGTGGTCGTGTCTGGGTATGAGAGAGTCAGAAGCCAGCCCAGCAACTACTGGTCAGGACTCACCATACAGAGAACGAGCCATCTGTTTATAGGGGGCTTGCCTCGTCGATACCTGCCATATCAGGGAGCCCAACCCTTCTCCAACTACACCGGCTGCGTAGAAATAATTGAAATGAATAAGCTGCGGGGATTCTACACATCCAGTGCCGTTGCCGGCAGCAACGTAGACGACTGCAGGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107679 lncRNA downstream 43553 86913824 ~ 86914345 (-) True G97379
TU107604 lncRNA downstream 150736 86806839 ~ 86807162 (-) True G97315
TU107601 lncRNA downstream 151390 86800443 ~ 86806508 (-) True G97313
TU107600 lncRNA downstream 153223 86799028 ~ 86804675 (-) True G97312
TU107580 lncRNA downstream 173590 86783953 ~ 86784308 (-) True LOC110518258
TU107774 lncRNA upstream 36546 87085636 ~ 87086121 (-) True G97461
TU107675 lncRNA upstream 50989 87100079 ~ 87364942 (-) True G97376
TU107788 lncRNA upstream 84493 87133583 ~ 87134110 (-) True G97474
TU107811 lncRNA upstream 125331 87174421 ~ 87175064 (-) True G97490
TU107821 lncRNA upstream 137904 87186994 ~ 87188541 (-) True G97495
XM_036987970.1 mRNA downstream 3337 86926439 ~ 86954561 (-) True LOC118966043
XM_036990001.1 mRNA downstream 93778 86783824 ~ 86864120 (-) False LOC110518258
XR_005053241.1 mRNA downstream 225361 86730931 ~ 86732537 (-) False LOC118966041
XR_005053236.1 mRNA downstream 259673 86671506 ~ 86698225 (-) False LOC118936335
XM_036990012.1 mRNA upstream 113187 87162277 ~ 87166534 (-) True LOC118966727
XM_036990021.1 mRNA upstream 118795 87167885 ~ 87204885 (-) True LOC118966728
XM_036990028.1 mRNA upstream 158374 87207464 ~ 87230079 (-) True LOC118966729
XR_005053247.1 mRNA upstream 183835 87232925 ~ 87242407 (-) True LOC118966045
XM_036987964.1 mRNA upstream 211476 87260566 ~ 87282239 (-) False LOC118966042
TU107596 other downstream 169846 86787057 ~ 86788052 (-) True G97308
TU107498 other downstream 334587 86566477 ~ 86623311 (-) True G97251
TU107372 other downstream 564809 86392561 ~ 86393089 (-) True G97176
TU107204 other downstream 806559 86146009 ~ 86151339 (-) False G97047
TU105929 other downstream 1606132 85346858 ~ 85351766 (-) True G96002
TU107871 other upstream 245267 87294357 ~ 87294999 (-) True G97535
TU108928 other upstream 864212 87913302 ~ 87915900 (-) False LOC110531505
TU109033 other upstream 1014372 88063462 ~ 88064854 (-) False pex13
TU109035 other upstream 1014372 88063462 ~ 88064914 (-) True pex13
TU109129 other upstream 1169739 88218829 ~ 88220804 (-) False G98510

Expression Profile