RNA id: XM_036987964.1


Basic Information

Item Value
RNA id XM_036987964.1
length 1481
RNA type mRNA
GC content 0.47
exon number 5
gene id LOC118966042
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 87260566 ~ 87282239 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTAAGCGTCAGGTTTCCGTAGCAACAGGTCCTTCACCGAGGCTTCCGGTGTTGTCTCACATGTCCAAAGAAAACATTGTAGCTATCCTTTTTTAAATTGGAAACATATGACTCCATGTACTTTTGCAACTAACCATCATTCGAAGTGTGCTGCTGCAACATGTTCAACTGAGGGCTGGCGTGTGACCTCTATGACTGACTGTAGTCGGACTAAACCAGGCATCACGTCTCATTCCTGGAAAAAAGGTTGGTGTGTTGCCATGACGTTCATCTAGCCTCCTCCATTGGACCTCTGACTTTATCAGACAGGAATTTAATTACATCTCTTTTACCTGAACATTCCTCAAATTAAATGTCTTCAGGAATGCTCTGAAGACCTGTACGAAAGCTCTGAAGACCTGTACGAAAGCTCTGAAGACCTGTACGAAAGCGAATAGGGAAGCACCAAAAGGGAGAAACTTAAAAATGCAGAGGCTTTCATTTCACATCATCGCTGTCATAATAAGCTATTTTCTCAATGGCTGCATAGTTGTTCACAGCCAGACAGTCTGCAGCCGACCAGCCAATCTGGAATGGCACCTACAACCACAAACTGCTCAGGTGAAATGGACACTCATGGAAAACATCTGTGATAGTATGGTCCAATGTTGGGGTGATCAAGAAAGGACAGAGACCCAAAAGTCAGATGTTCCGCCAACTTGGAACTTACCTCAGATTTGTCCTCTAGAGGTGCAGTTTGGCGTCAAGCTGTTTGTTTCTATTGATGCCACTCTGGATTTATACGGTATCAGGATCCTCAATGTGTCAAAGGAGGACTTTGAAAGTTGTTCCACTGCACCACAGTCACAAGACCAGTTTCTCTGTTCCGATGACGTTATGAATGCGTCTAGGCAGGTCCAACCTAAGTGGCTTCTCCCGGGCCTTCATTATTTCATAGCTTCGCATGAGGGGAATTCACAGCTCTGCAAGCTGGGTCTTCGTCTCAACGTCTCTGTGAAGGAACAACAGTGTCAAAGCAGCCCACTAGTGCGACTCTGCTCCGGGAACGGTGTTTGTAGGACAAGCTTTTGGGAAGACGGAGCGTACCGCTGTCAGTGCCGCCAGCATTACTCTGGAAAGTTCTGTGAGAAGTTTGATGCGTGTTTGGAAAACCCATGTGAGAACGAAGGAGTCTGTGTAACCAATGGTACGACAGATCACATCCACGCAACGTATAAGTGTTTGTGCCCTCCACTTTTTTCAGGGGCTAACTGCTCTGATGTGATTGGACGAGAGAACTGTGAAAGAGTTTGTCGTAATGGAACGTGTCTCCAAGTTTCACCTTTCTCCTTCAAATGTGTGTGTTACACAGGACACCCAGCTGGATTTACCGTGTATAAGCTGGACTGTTTGGATTTACCTGTTGCcgtttggacctggacctaccgaAAACCCGATTCGTGTACTgaaccctgctatccttgacctcgcCTGCGGTCTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107844 lncRNA downstream 24225 87236088 ~ 87236341 (-) True G97509
TU107838 lncRNA downstream 32071 87224014 ~ 87228495 (-) False G97505
TU107839 lncRNA downstream 32071 87225038 ~ 87228495 (-) False G97505
TU107840 lncRNA downstream 34311 87225038 ~ 87226255 (-) True G97505
TU107821 lncRNA downstream 72025 87186994 ~ 87188541 (-) True G97495
TU107877 lncRNA upstream 25529 87307768 ~ 87308157 (-) True G97541
TU108221 lncRNA upstream 124199 87406438 ~ 87407619 (-) True G97812
TU108241 lncRNA upstream 158700 87440939 ~ 87441633 (-) True G97830
TU108262 lncRNA upstream 190809 87473048 ~ 87473627 (-) True G97848
TU108274 lncRNA upstream 204661 87486900 ~ 87488031 (-) True G97857
XR_005053247.1 mRNA downstream 18159 87232925 ~ 87242407 (-) True LOC118966045
XM_036990028.1 mRNA downstream 30487 87207464 ~ 87230079 (-) True LOC118966729
XM_036990021.1 mRNA downstream 55681 87167885 ~ 87204885 (-) True LOC118966728
XM_036990012.1 mRNA downstream 94032 87162277 ~ 87166534 (-) True LOC118966727
XM_036990006.1 mRNA downstream 211476 86957898 ~ 87049090 (-) True LOC110532959
XM_036988005.1 mRNA upstream 382428 87664667 ~ 87746089 (-) False LOC118966049
XM_036988016.1 mRNA upstream 491573 87773812 ~ 87825477 (-) False LOC110508309
XM_036988023.1 mRNA upstream 491573 87773812 ~ 87825477 (-) False LOC110508309
XM_036988027.1 mRNA upstream 491573 87773812 ~ 87825477 (-) False LOC110508309
XM_036988030.1 mRNA upstream 491573 87773812 ~ 87825477 (-) False LOC110508309
TU107596 other downstream 472514 86787057 ~ 86788052 (-) True G97308
TU107498 other downstream 637255 86566477 ~ 86623311 (-) True G97251
TU107372 other downstream 867477 86392561 ~ 86393089 (-) True G97176
TU107204 other downstream 1109227 86146009 ~ 86151339 (-) False G97047
TU105929 other downstream 1908800 85346858 ~ 85351766 (-) True G96002
TU107871 other upstream 12118 87294357 ~ 87294999 (-) True G97535
TU108928 other upstream 631063 87913302 ~ 87915900 (-) False LOC110531505
TU109033 other upstream 781223 88063462 ~ 88064854 (-) False pex13
TU109035 other upstream 781223 88063462 ~ 88064914 (-) True pex13
TU109129 other upstream 936590 88218829 ~ 88220804 (-) False G98510

Expression Profile