RNA id: XM_036988005.1


Basic Information

Item Value
RNA id XM_036988005.1
length 1441
RNA type mRNA
GC content 0.48
exon number 6
gene id LOC118966049
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 87664667 ~ 87746089 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCCTCCTCCAGGGTAGGAAAACATTACGGACGGTGAGTGTGGACCGTGTCAGGAAAAATAGCttcttggatttttttttttactccaggGTTGGAATACTTTTTTTGTGGTGTGGGGTCTACATGGTTTGTTACAAGCACAAATCCATGTATCTGTCGTCTTGGAATTGAGTTGTAGTAATCTTCACGGAGCTTGTCTTCTCACCTGGGAGGACGCCGAGTCCCGTCAGCTGGCGGTCGGGATAACTATTTCCGCCGTGTTGTTCGTGGTATGACGGCTAGCTGATAGCTGGGACCGCTGCAATGCTAGGTGGTAATGAGCCAGATCGCTTTTTTAGCTGAAACAGTTTAAGTGGATATTAAAAGGTTGTTCGAGACAAAGGATAAGGAATACCTGGCTTTTGCATTATTCTGGAACGGTAATCTTCACTACATTTACCAGCATGCACAGCGGCAGATGTGACAGCCACCGAGGCAGAGATTCCACAAGCCTTCAATGTGtttttttctggatgtttttgaCGGCATGTCTCCTCCACCGCGAGAGAAACCGCTGACTTTTGGATTGTCCCCCATTTTCTATTTTTCTGATCAAATATTAACTATGTGTGTCGACGCAGCAGCTTGGATTTGTTTGGATACATTTAACACTTTGAAGTGAGTCGGACGGGAAAATCGACAGAAAGGAAGCACCAGTTAAAAACATAAAGGGTCCTTTTCCCCCCTAAAGAAATATCATGGCATCTGTGTGGAAAAGATTACAACGTGTGGGGAAACACGCGTCCAAGTTTCAGTTCGTGGCTTCCTATCAGGAGTTGATGGTGGAATCCACGAAGAAATGGCAACCAGACAAGCTGGTAGTGGTGTGGACTCGCAGGAGCCGACGGAAATCCTCCaaggctcacagctggcagCCAGGCATCAAGAACCCCTACCGAGGAGTGGTGGTGTGGCCTGTACCGGAAAACGTAGAAATATCTGTCACACTCTTCAAGGACCCCCACGCAGAGGAGTTTGAAGACAAGGAGTGGACGTTTGTCATAGAAAATgaGTCTCCTTCAGGTCGTAGAAAGGCTCTGGCCAGCAGCAGCATCAACATGAAGCAGTATGCCAGCCCCATGCCCACACAGACTGACGTCAAGCTCAAGTTCAAGCCCCTCTCCAAGAAGGTGGTGTCTGCCACGCTACAGTTCTCCCTCTCCTGCATCTTCCTCCGTGAGGGCAAGGCCACGtaagtccacacacacaccacacacacacaccacacacacacacacggcaaagCCACGTAAATATGCTCCCTTCACAAAGTCAACCGCCCCACCCCAAATCTAGCCCCCTAAACATCTCTCCTCCTTGAACTCGTCTTTTACTACTCtggtcttcttctctttcttccataTCAGTTCCTATCTCCGTTTCTTTCCCTTGTCTGTCTTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108363 lncRNA downstream 13704 87650556 ~ 87650963 (-) True G97934
TU108309 lncRNA downstream 118668 87545451 ~ 87545999 (-) True G97890
TU108290 lncRNA downstream 153029 87511119 ~ 87511638 (-) True G97872
TU108274 lncRNA downstream 176636 87486900 ~ 87488031 (-) True G97857
TU108262 lncRNA downstream 191040 87473048 ~ 87473627 (-) True G97848
TU108394 lncRNA upstream 10005 87756094 ~ 87756430 (-) True G97964
TU108395 lncRNA upstream 10560 87756649 ~ 87756855 (-) True G97965
TU108396 lncRNA upstream 10941 87757030 ~ 87757369 (-) True G97966
TU108407 lncRNA upstream 21706 87767795 ~ 87768100 (-) True G97973
TU108408 lncRNA upstream 22213 87768302 ~ 87768648 (-) True G97974
XM_036987964.1 mRNA downstream 382428 87260566 ~ 87282239 (-) False LOC118966042
XR_005053247.1 mRNA downstream 422260 87232925 ~ 87242407 (-) True LOC118966045
XM_036990028.1 mRNA downstream 434588 87207464 ~ 87230079 (-) True LOC118966729
XM_036990021.1 mRNA downstream 459782 87167885 ~ 87204885 (-) True LOC118966728
XM_036990012.1 mRNA downstream 498133 87162277 ~ 87166534 (-) True LOC118966727
XM_036988016.1 mRNA upstream 27723 87773812 ~ 87825477 (-) False LOC110508309
XM_036988023.1 mRNA upstream 27723 87773812 ~ 87825477 (-) False LOC110508309
XM_036988027.1 mRNA upstream 27723 87773812 ~ 87825477 (-) False LOC110508309
XM_036988030.1 mRNA upstream 27723 87773812 ~ 87825477 (-) False LOC110508309
XM_036988035.1 mRNA upstream 27723 87773812 ~ 87825477 (-) False LOC110508309
TU107871 other downstream 369668 87294357 ~ 87294999 (-) True G97535
TU107596 other downstream 876615 86787057 ~ 86788052 (-) True G97308
TU107498 other downstream 1041356 86566477 ~ 86623311 (-) True G97251
TU107372 other downstream 1271578 86392561 ~ 86393089 (-) True G97176
TU107204 other downstream 1513328 86146009 ~ 86151339 (-) False G97047
TU108928 other upstream 167213 87913302 ~ 87915900 (-) False LOC110531505
TU109033 other upstream 317373 88063462 ~ 88064854 (-) False pex13
TU109035 other upstream 317373 88063462 ~ 88064914 (-) True pex13
TU109129 other upstream 472740 88218829 ~ 88220804 (-) False G98510
TU109132 other upstream 472740 88218829 ~ 88220804 (-) False G98510

Expression Profile