RNA id: TU108929


Basic Information

Item Value
RNA id TU108929
length 799
lncRNA type sense_over
GC content 0.39
exon number 2
gene id LOC110531505
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 87911053 ~ 87919678 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGAGTTAAAAATCTGACTGGCAACccaacaccttagccaaacaaaATGTTATTGCTCTTTGACTCAATAATTGGTGCATTCTGGGTGTGCTATAAAGTTCAGAAGTTATGGGCAGAGTTAAAAATCTGACTGGCAACccaacaccttagccaaacaaaATGTTATTGTTCTTTGACTCAATAATTGGTGCGTTCTGGGTGTGCTATAAAGTTCAGACGTTATGGGCAGAGTTAGAAATCTGTCTGTCAGAGGTTTACAATGTAAGTTTACTTTTAATCTGTCTAtatgcatatttcaagacatggcatgtGGGGGTGCCGTTAGATAACCAATGGGTTGGACAATATTATTTTACTTGAATACTGGAAGTCAAATTATACTCCAACATTAAGAGAATGAAAGAATCAAacatttttattatttaaaaatattGAATACGATCTTTCTACAGACAGAAACAACACGACGATTTGAAGTCGTGAGAAAATGGCCCCCTtttttaaacttgtttttcaacccctGAGAAACACAGTTATTGAAGCGTCCCTGGAGCAGTTCAGTGGTtctgtgccttgctcaagggcacaacagcagCAGGAGGCGGCGTCTAGGATACCCAGAAGCCTACCAGAATTGTTCCGTTCAGActtgggattcaaaccagtgactttCCAGTTGCAGGTCTGCCTCTCAGGACATTATCAATTAAATGTTACCTGGCTAAAACCatttactacaactactacattACAAACTGTTTTCCTTAGCTCGCTGAATAACCTAGTGTTGGACTACGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108943 lncRNA downstream 7407 87903752 ~ 87904046 (-) True G98377
TU108942 lncRNA downstream 8027 87902563 ~ 87903426 (-) True G98376
TU108941 lncRNA downstream 8903 87902151 ~ 87902550 (-) True G98375
TU108939 lncRNA downstream 10651 87900476 ~ 87900802 (-) True G98373
TU108937 lncRNA downstream 13893 87897254 ~ 87897560 (-) True G98371
TU108932 lncRNA upstream 6385 87918749 ~ 87919056 (-) True LOC110531505
TU108952 lncRNA upstream 13364 87925728 ~ 87926944 (-) False G98386
TU108953 lncRNA upstream 13364 87925728 ~ 87926643 (-) True G98386
TU108956 lncRNA upstream 14970 87927334 ~ 87929123 (-) False G98387
TU108957 lncRNA upstream 14970 87927334 ~ 87928538 (-) False G98387
XM_036988023.1 mRNA downstream 85976 87773812 ~ 87825477 (-) False LOC110508309
XM_036988119.1 mRNA upstream 117164 88029528 ~ 88047443 (-) False LOC110531618
XM_036988116.1 mRNA upstream 117164 88029528 ~ 88047874 (-) False LOC110531618
XM_036988094.1 mRNA upstream 117164 88029528 ~ 88053882 (-) False LOC110531618
XM_036988084.1 mRNA upstream 117164 88029528 ~ 88053883 (-) False LOC110531618
XM_036988100.1 mRNA upstream 117164 88029528 ~ 88053884 (-) False LOC110531618
TU107871 other downstream 616454 87294357 ~ 87294999 (-) True G97535
TU107596 other downstream 1123401 86787057 ~ 86788052 (-) True G97308
TU107498 other downstream 1288142 86566477 ~ 86623311 (-) True G97251
TU107372 other downstream 1518364 86392561 ~ 86393089 (-) True G97176
TU107204 other downstream 1760114 86146009 ~ 86151339 (-) False G97047
TU108928 other upstream 938 87913302 ~ 87915900 (-) False LOC110531505
TU109033 other upstream 151098 88063462 ~ 88064854 (-) False pex13
TU109035 other upstream 151098 88063462 ~ 88064914 (-) True pex13
TU109129 other upstream 306465 88218829 ~ 88220804 (-) False G98510
TU109132 other upstream 306465 88218829 ~ 88220804 (-) False G98510

Expression Profile