RNA id: XM_036988069.1


Basic Information

Item Value
RNA id XM_036988069.1
length 3660
RNA type mRNA
GC content 0.51
exon number 25
gene id LOC110517253
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 87953865 ~ 88022972 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGCCATCGGCTGAAAACTAAACCGAGATGGAATCTCCCAGTCTGAACCGGTTTCAACCGGTTATGTGAGTTAGTTGCTTCAACGAGGAGAAGAGGCGCAGGAATACAATCTCTCAAACCGCCCcgctgcaacaaaaaaaaacaacattataGTTAAAGAATTAAATTGTAAATTAAGGTTTATTTTTATTTCGTAAAATGAATCGGAGTATATTATTGAGCGTACCGTGATAATAGTTGCGGAATCCACATCTGTGATCCTTATTAACTAGCCATCAATATACACCTTCTGGAATTGGAGCCAGCTAACGTGTCAGAGATAACAGTAACGTTAGCCAGTCTATTTCTGACTAAACAACGATATTGTATATAACCTTGTAGCAAGCTTCCCTGTGGGGAAAAAAGCCCGTCTTCTTTCAGTCAGAGGCTTGGACTTTTGAGCTCCATGCCAGCAGTTATGACAGTGTTAGCAGACCATGCAGCGCAGCAGCTGCTAGACTTCAGCCAGAAACTAGACATCAACCTGTTGGACAACGTGGTCAACTGTCTGTACCACGGGGTCGGAACACAGCAAAGGCTGGCTCAGGAGGTTCTGACCCAGCTGAAAGAGCACCCGGATGCTTGGACCAGAGTGGACACCATACTGGAGTTCTCCCAGAGCATGAACACCAAATACTATGCTCTGCAGATTCTGGAAACAGTTATCAAAACAAGATGGAAGATTCTACCCAGAAACCAGTGTGAAGGTATTAAAAAGTATGTTGTTGGACTAATTATCAAGACGTCGTCGGACGCTACAATGGTCGAGAAAGAGAAAGTGTACATTGGAAAGCTGAACATGATCCTTGTTCAGaTCCTGAAGCAGGAGTGGCCCAAGCACTGGCCCACGTTCATCAGTGACATCGTGGGAGCCAGCCGCACCAGCGAGAGCCTCTGTCAGAACAACATGATCATCCTCAAGCTGCTCAGTGAGGAGGTGTTTGACTTCTCTAGTGGACAGATGACCCAGGTCAAGGCCAAGCATCTCAAAGACAGCATGTGCAATGAATTCTCCCAGATATTCCAGCTCTGCCAGTTTGTCATGGAGAATTCCCAGAATGCACCACTGGTCCACGCCACTCTAGAAACGCTGCTGAGGTTTCTCAATTGGATTCCTCTGGGGTACATTTTCGAGACCAAACTCATCAGCACACTCGTCTACAAGTTCCTGAACGTGCCGATGTTCCGCAACGTGACGTTGAAGTGTCTGACGGAGATCGCCGGCGTCAGTGTCAGCCAATACGAGGAGCAGTTTGTCAACCTCTTCACGCTCACCATGTGTCAACTcaaacagATGCTTCCCCTGAACACCAACATCCGCCTGGCGTATTCCAACGGTAAGGATGACGAGCAGAACTTCATCCAGAACCTCAGCCTGTTCCTCTGCACCTTCCTGAAGGAGCACGGTCAGCTCATCGAGAAGAGGCCCAACCTCCGAGAGACACTGATGGAGgctcTCCACTACATGTTGCTGGTGTCTGAGGTGGAGGAGACAGAGATCTTTAAGATCTGTCTGGAGTACTGGAACCACCTGGCTGCAGAGCTTTACAGGGAGAGTcccttctccacctccacctcccccctGCTGTCTGGATCACAACACTTTGATGTCCCTCCTCGCAGACAGCTCTACCTGCCTGTACTCTCCAAGGTGCGTCTGCTGATGGTGAGCCGCATGGCCAAGCCGGAGGAGGTGCTGGTGGTGGAGAACGACCAGGGAGAGGTGGTACGAGAGTTCATGAAGGACACAGACTCCATCAACCTCTACAAGAACATGAGAGAGACACTGGtgtaccTGACCCATCTGGACTATGCAGACACGGAGCGTATAATGACAGAGAAGCTTCATAACCAGGTGAACGGTACAGAGTGGTCCTGGAAGAACCTCAACACACTGTGCTGGGCTATAGGGTCCATCAGTGGAGCCATGCACGAAGAGGACGAGAAGAGGTTCCTGGTCACCGTCATCAAGgatctGCTGGGTCTATGTGAACAGAAGAGGGGAAAGGACAATAAGGCCATCATTGCCTCCAATATCATGTACATCGTGGGCCAGTACCCTCGCTTCCTCAGAGCCCACTGGAAGTTCCTCAAGACCGTCGTCAATAAACTCTTTGAGTTCATGCACGaGACCCATGATGGGGTACAGGATATGGCGTGTGACACTTTCATCAAGATCGCCCAGAAGTGCCGTCGCCATTTTGTCCAGGTGCAGGTGGGCGAGGTGATGCCCTTCATCGACGAGATCCTCAacaacatcaacaccatcatctgtGACCTGCAGccacagcagGTCCACACGTTCTACGAGGCCGTGGGGTACATGATCGGAGCCCAGACAGACCAGGCAGTACAAGAGCATATCATAGAGAAATACATGTTACTGCCTAACCAGGTGTGGGACAGCATCATTCAACAGGCCACCAAGAACGTGGACATTCTGAAGGACCCAGAGACGGTGAAGCAGCTCGGCAGCATCCTGAAGACCAACGTCCGGGCCTGTAAGGCCGTGGGACATCCCTTCGTTATCCAGTTAGGACGCATTTATCTGGACATGCTCAACGTCTACAAGTGCCTCAGCGAAAACATCTCCGCAGCCATCCAGACCAACGGAGAGATGGTGACGAAACAGCCCCTGATCAGAAGTATGAGGACGGTGAAAAGAGAGACGCTCAAACTCATCTCCGGCTGGGTTAGCAGATCCAGCGATCCACAGATGGTGGGGGAGAACTTTGTTCCGCCACTGCTCGACGCCGTTCTCATCGACTACCAGCGCAACGTCCCCGCCGCCCGGGAGCCCGAGGTCCTCAGCACCATGGCAACCATCGTCAACAAGCTGGGCGGACACATCACCGGAGAGATCCCGCAGATCTTCGATGCCGTGTTCGAATGCACGCTCAACATGATCAATAAAgactTTGAGGAGTACCCGGAACACAGGACTCATTTCTTCTACCTGCTGCAGGCGGTCAACTCCCATTGTTTCCCAGCATTCCTGGCCATCCCTCCGGCCCAGTTCAAACTGGTGCTGGACTCCATCATCTGGGCCTTCAAACACACCATGAGGAACGTGGCCGACACAGGTCTTCAGATCCTCTACACTCTACTGCAGAACGTGACCCAGGAAGAGGCTGCAGCACAGAGCTTCTACCAGACATACTTCTGTGACATCCTCCAACACATCTTCTCTGTGGTCACTGACACATCACACACTGCTGGCCTGACGATGCATGCCTCCATCCTGACCTACATGTTTAACCTGGTGGAGGAAGGGAAGATCAACACCCAGCTCAACCCCTCCAACCCCGGCAACAACCAGGTCTTCATACAGGAGTACGTGGCCAACCTGCTCAAAACTGCTTTCCCACATCTACAGGATGCCCAGGTCAAGGTGTTCGTAACAGGACTGTTCAGTCTAAACCAGGACATTGCAGCCTTCAAGGAACACCTGAGGGACTTCCTGGTACAGATTAAGgaGTTTGCAGGGGAGGACACCACAGACCTGTTCCTAGAGGAGCGGGAGGCGTCGCTGCGTCAGGCGCAGGAGGAGAAACACAAGCTGCAGATGTCAGTTCCCGGTATCCTCAACCCACACGAAATACCCGAGGAGATGTGTGATTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108489 lncRNA upstream 6839 87947250 ~ 87947471 (+) True G98045
TU108486 lncRNA upstream 12938 87941040 ~ 87941372 (+) True G98043
TU108485 lncRNA upstream 20705 87933267 ~ 87933605 (+) True G98042
TU108448 lncRNA upstream 26033 87927396 ~ 87928277 (+) True LOC118966052
TU108480 lncRNA upstream 34345 87919416 ~ 87919965 (+) True G98037
TU108531 lncRNA downstream 7927 88029497 ~ 88030308 (+) True G98077
TU108544 lncRNA downstream 16950 88038520 ~ 88039623 (+) True G98086
TU108550 lncRNA downstream 21316 88042886 ~ 88092751 (+) True G98089
TU108535 lncRNA downstream 33030 88054600 ~ 88056231 (+) True G98080
TU108561 lncRNA downstream 36366 88057936 ~ 88058292 (+) True G98100
XM_036988060.1 mRNA upstream 25944 87920968 ~ 87928366 (+) False LOC118966052
XM_036988064.1 mRNA upstream 25944 87920968 ~ 87928366 (+) False LOC118966052
XM_036990029.1 mRNA upstream 292818 87648929 ~ 87661492 (+) True LOC118966730
XM_036987999.1 mRNA upstream 309273 87476504 ~ 87645037 (+) True LOC118966047
XM_036987989.1 mRNA upstream 309275 87476504 ~ 87645035 (+) False LOC118966047
XM_036988150.1 mRNA downstream 183436 88205006 ~ 88225488 (+) False LOC110531497
XM_036988153.1 mRNA downstream 183436 88205006 ~ 88225488 (+) False LOC110531497
XM_036988210.1 mRNA downstream 586612 88608182 ~ 88744392 (+) False LOC118966060
XR_005053267.1 mRNA downstream 623018 88644588 ~ 88647803 (+) False LOC118966061
XR_005053266.1 mRNA downstream 623776 88645346 ~ 88647803 (+) False LOC118966061
TU108449 other upstream 31896 87921007 ~ 87922414 (+) False LOC118966052
TU108152 other upstream 196764 87757041 ~ 87757546 (+) True G97752
TU106748 other upstream 1458618 86492069 ~ 86495692 (+) False LOC118966033
TU106719 other upstream 1493468 86460228 ~ 86460842 (+) False G96630
TU106660 other upstream 1514838 86430202 ~ 86439472 (+) False LOC118966024
TU108569 other downstream 109468 88131038 ~ 88144441 (+) False G98104
TU108570 other downstream 109468 88131038 ~ 88144441 (+) False G98104
TU108836 other downstream 615480 88637050 ~ 88744413 (+) True LOC118966060
TU108810 other downstream 619443 88641013 ~ 88643451 (+) False LOC118966061
TU108796 other downstream 624886 88646456 ~ 88649794 (+) True LOC118966062

Expression Profile