RNA id: XR_005053256.1


Basic Information

Item Value
RNA id XR_005053256.1
length 3396
RNA type mRNA
GC content 0.54
exon number 15
gene id LOC110531618
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 88029528 ~ 88053890 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggacgtTACAACGACCGGCGGTTCGTTATCTAAACGTCATTACCGAGCGTTTTGGGGTGTTTCCATCCCGTATGCAATTCTGATTGAATGTCTTGTCTGTCCATCAACTCGTCCCCGGGATGATACTGCAGAGAGAGTGCCGCTAGCTCGGTAGTAGCATTAGCGTTAAACGTGGATGACGGCTACTGTACACCGGAACGTCCTATCATCCGGACCACAGAAGAATCAGCTGTCATCATTGAATCATTCGACTACAGCCAAAGGGGCCTTCCAAGGGACGTCAAGCCATCCTTGTTACAAGAAGATAATCGACATTGCCAAAAACATGAGTCGTTACTGCACCCTGAACAACAACTTTCCCAATGACAACAACCTCCTGGCCCTGGACATGGTGCTGAGCTCTCTCTGGAGCATTCCACAGCCCATCAACTGGGACAACGTGGCCATGCTGGTCCCTGGCTTCACACCCAAGGAGTGTGCGCAGAGGTTCGAGGAGCTGAAGAGCACCGGAGGGTTCCATCACGTGGACGACCAATGCAACGCGCTGACGGCAGGAGGCTCCTCCCCTGTGGACTACATCAAATCCACACTATTGGACACCACGGGAGACGTGGGGGAGACGCGGAACAATCAGAGCTCCATCTCAGTGACGGGCCTGGCGGTGAACCCTTTAAGAGGAAGCTCGGTGGAGAAGGAGAGCAGGGAGTCTGCAGAGGAGGGCGAGAAGCCCCAGGAGGGGAAAGGGCCCAATATGGTGATCCACGTGTGTGACGAGGCTAAGAACCTGAAGCAGGACTTCATGTGTCCCCGTGACCTTCTGATCAACGAGATGCGTTACTTTGCCGAGTACCTCTCTGTTGACACCCAGCGCTGGGAGGAGGTGGACATCTCTGTGCACTGTGACGTGCAGATCTTCGACTGGCTCATGAACTACGTCAAGAGGCACAAAATGGCCGCCGATGGCAGCCATGACAAACCCAAGCTCGAGCCCAGCAATGTGATCTCAATCCTCATCTCCTCCGAGTTCTTGAAGATGGACACGTTAGTGGAGGAGTGCATCCAGTACTGTCACAAGCACATGAGTGCCATCGTGGCCACACCCTGCAACATGAACTGCATCAACAGTAACCTGGCAGCGGACATGTCTGACCTGTTCAGCCACAACGAGGCAGACGACATCACGGACAGAAAAGACAAGTTCAAAAGtAAGTTATTCCAGAAGAAAATTGAGAGTCTCTTCGATCCTGACTATAAGAACCGGGACTCCCCAGGCAACGCATCAACTCTGTACAGGTGTGGTCTGTGCCTGAAACTGCTGACCAAGGACACAGAGCGGAAGATCTCCTGCATCCCAGGGAAGATCAACATCAACCCTCGAGGAGACATCACCTACACTCACAGCAGGCAGAAGAGATGGGAGGTCCATGATCTATCACTACCTCTGGTCTGTAGGCAGAAGAGATGGGAGGTCCATGATCTATCACTACCTCTGGTCTGTAGGCAGAAGAGATGGGAGGTCCATGATCTATCACTACCTCTGGTCTGTAGGCAGAAGAGATGGGAGGTCCATGATCTATCACTACCTCTGGTCTGTAGGCAGAAGAGATGGGAGGTCCATGATCTATCACTACCTGTGGTCTGTAGGCAGAAGAGATGGGAGGTCCATGATCTATCACTACCTCTGGTCTGTAGGCAGAAGAGATGGGAGGTCCATGATCTATCACTACCTCTGGTCTGTAGGCAGAAGAGATGGGAGGTCCATGATCTATCACTACCTCTGGTCTGTAGGCAGAAGAGATGGGAGGTCCATGATCTATCACTACCTCTGGTCTGTAGGCAGAAGAGATGGGAGGTCCATGATCTATCACTACCTGTGGTCTGTAGGCAGAAGAGATGGGAGGTCCATGATCTATCACTACCTCTGGTCTGTAGGCAGAAGAGATGGGAGGTCCATGATCTATCACTACCTCTGGTCTGTAGGCAGAAGAGATGGGAGGTCCATGATTACATGACAGGACTGTATGAGGAGCTGAAGTCCTGGGTGCTGGTCTACTGGAGGATCTGGGGAACCATCAACCACCTCACCTGTTCCCACTGCCAAcaggtgtttgtgtgtgcagagctgtcCCACTGTCGGTATCACCCAGAGGTTGTGTTGTACCCAGGCATGGGGACAGAGCAGGGCTGGCACGGGACGGGCATCTACCCCTGCTGCAACCAGAGGACGCTACGCTTTGACCCCACCGGCATGCCCAAGggcTGTAAGATGCGGGACCACATAGTGAATGCGTCAGACAGTGGAGACTGTACTGGAGACCACCAGGTTAACTCAGCCCAGACCAGACTGCTCAACGACCTGCTACTACacagagagacggtgtgtgtacCCAACACACCCCTACCAGAGACAGGGtaagagacagtgtgtgtaccCAACACACCCCTACCAGAGACAGGGtaagagacagtgtgtgtaccCAACACACCCCTACCAGAGACAGGGtaagagacagtgtgtgtaccCAACACACCCCTACCAGAGACAGGGtaagagacagtgtgtgtaccCGACACGCCCCTACCAGAGACAGGGtaagagacagtgtgtgtaccCAACACACCCCTACCAGAGACAGGGtaagagacagtgtgtgtaccCAACACACCCCTACCAGAGACAGGGtaagagacagtgtgtgtaccCAACACACCCCTACCAGAGACAGGGTAATAGACAGTGTGTGTACCCAACACGCCCCTACCAGAGACAGGGTAAGAGACGGTGTGTGTACCCAACACACCCCTACCAGAGACAGGGtaagagacagtgtgtgtaccCAACACGCCCCTACCAGAGACAGGGTAAGAGACGGTGTGTGTACCCAACACACCCCTACCAGAGACAGGGtaagagacagtgtgtgtaccCAACACGCCCCTACCAGAGACAGGGtaagagacagtgtgtgtaccCAACACACCCCTACCAGAGACAGGGTAATAGACGGTGTGTGTACCCAACACACCCCTACCAGAGACAGGGTAAGAGACGGTGTGTGTACCCAACACGCCCCTACCAGAGACAGGGtaagagacagtgtgtgtaccCAACACACCCCTACCAGAGACCGGGtaagagacagtgtgtgtaccCAACACACCCCTACCAGAGACAGGGtaagagacagtgtgtgtaccCAACACACCCCTACCAGAGACAGGGtaagagacagtgtgtgtaccCAACACGCCCCTACCAGAGACAGGGCCTGTAGACTCCCCctccagtgggtcagagagaggggagcggGTACTGGACTGTGACATCCTGGTAGAGCCGGGGCTTCTGGGACTTCAGAGAGTAGAGGGCACCACCTTTTCCCTGTTGAAAAACTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109027 lncRNA downstream 9467 88027047 ~ 88027665 (-) True G98445
TU108971 lncRNA downstream 15325 88021032 ~ 88021807 (-) True G98399
TU109026 lncRNA downstream 17841 88018908 ~ 88019291 (-) True G98444
TU109005 lncRNA downstream 44972 87991819 ~ 87992160 (-) True G98427
TU109002 lncRNA downstream 53702 87981651 ~ 87983430 (-) True G98424
TU109063 lncRNA upstream 47583 88101473 ~ 88102253 (-) True G98473
TU109071 lncRNA upstream 57776 88111666 ~ 88113966 (-) False G98478
TU109072 lncRNA upstream 59789 88113679 ~ 88114282 (-) True G98478
TU109088 lncRNA upstream 111947 88165837 ~ 88167312 (-) False G98488
TU109087 lncRNA upstream 112134 88166024 ~ 88167312 (-) True G98488
XM_036988046.1 mRNA downstream 117454 87911053 ~ 87919678 (-) False LOC110531505
XM_036988049.1 mRNA downstream 117454 87911053 ~ 87919678 (-) False LOC110531505
XM_036988054.1 mRNA downstream 117454 87911053 ~ 87919678 (-) False LOC110531505
XM_036988057.1 mRNA downstream 117454 87911053 ~ 87919678 (-) False LOC110531505
XM_036988037.1 mRNA downstream 211655 87773812 ~ 87825477 (-) False LOC110508309
XM_021614896.2 mRNA upstream 655 88054545 ~ 88065123 (-) False pex13
XM_036988130.1 mRNA upstream 38154 88092044 ~ 88124727 (-) True LOC118936685
XM_036988136.1 mRNA upstream 77148 88131038 ~ 88144466 (-) True LOC100499622
LOC118966733 mRNA upstream 105227 88159117 ~ 88164611 (-) True LOC118966733
XM_036988142.1 mRNA upstream 125062 88178952 ~ 88202158 (-) False papolg
TU108928 other downstream 121232 87913302 ~ 87915900 (-) False LOC110531505
TU107871 other downstream 742133 87294357 ~ 87294999 (-) True G97535
TU107596 other downstream 1249080 86787057 ~ 86788052 (-) True G97308
TU107498 other downstream 1413821 86566477 ~ 86623311 (-) True G97251
TU107372 other downstream 1644043 86392561 ~ 86393089 (-) True G97176
TU109033 other upstream 9572 88063462 ~ 88064854 (-) False pex13
TU109035 other upstream 9572 88063462 ~ 88064914 (-) True pex13
TU109129 other upstream 164939 88218829 ~ 88220804 (-) False G98510
TU109132 other upstream 164939 88218829 ~ 88220804 (-) False G98510
TU109139 other upstream 164939 88218829 ~ 88220804 (-) False G98510

Expression Profile