RNA id: TU109033



Basic Information


Item Value
RNA id TU109033
length 923
RNA type TUCP
GC content 0.61
exon number 2
gene id pex13
representative False

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 88054545 ~ 88065123 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CATGGAGCTAGATATGTAGCAATTTGCTAGTTACTACGGGGGGAAGTGAAGGGAAAACGGTTAAAAACGGTGTAACTTCAGACAATTTGTACGATGGCATCGCAGCCTCCTCCTAAACCGTGGGAAAGGCGGATTCCAGGAGCAGCCATGAGTGCACCAGTTAACTATCGGTCGATTGACTTTGCCCCACCAGGTCCCTCCACCCCCGGCCTCTCTGGTCCCGCCGGTCCTCCCGTCTTGACCCGCATGGTGCCCCCTGTCCCCCCTCgccctgtccagtccatccagtCCTACCGTCCCTCCTACAGCTCCTTCCCTGGCTCCTCCTACAACCCCTATGGTAGCTCCAGCCTCTACGGTGGAGcatacagcccctacagtccctaCAGTGGTGGCTATGGCATGGGAGGGGTGCTCGGTGGGAGCCTGGGCTACAGCCGCTTCGGCCAAACCGGTGGTGAAGACGTGGCGCCCAGTCGGTTTGTCCAACAGGCAGAGGAGAGCAGCCGCGGCGCCTTCCAGTCCATCGAGAGCATCGTCCAGGCCTTCACCTCGGTCAGCATGATGATGGACGCCACCTTCTCGGCCGTCTACAACAGCTTCCGAGCCGTGCTGGATGTAGCCAACCACCTGACACGGTTACGGATGCACTTTACCAAGGTTCTGTCGGCCTTTGCCCTGGTGCGCACCCTGCGCTACCTGTACCGCCGCATACAGAGGATGCTGGGGCTGAGACGGGACGGTGAGGTGGAGGACCTGTGGGCAGACAGCGAAGGAGCTGTTCTGGCGACCAGAGGTGCTGGAGCCGCAATGGAAGACCCCAGAGCCGGAGCGGTCAAGTCGTGGCCCATCTTCCTTTTTCTGGCCGTGGTCCTAGGAGGGCCCTATCTCATCTGGAAGCTGCTGAGCTCTGCCCAGGGGCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU109027 lncRNA downstream 35797 88027047 ~ 88027665 (-) True G98445
TU108973 lncRNA downstream 40500 87956645 ~ 88022962 (-) True G98401
TU108971 lncRNA downstream 41655 88021032 ~ 88021807 (-) True G98399
TU109026 lncRNA downstream 44171 88018908 ~ 88019291 (-) True G98444
TU109005 lncRNA downstream 71302 87991819 ~ 87992160 (-) True G98427
TU109063 lncRNA upstream 36619 88101473 ~ 88102253 (-) True G98473
TU109071 lncRNA upstream 46812 88111666 ~ 88113966 (-) False G98478
TU109072 lncRNA upstream 48825 88113679 ~ 88114282 (-) True G98478
TU109088 lncRNA upstream 100983 88165837 ~ 88167312 (-) False G98488
TU109087 lncRNA upstream 101170 88166024 ~ 88167312 (-) True G98488
XR_005053257.1 mRNA downstream 9572 88037119 ~ 88053890 (-) False LOC110531618
XR_005053256.1 mRNA downstream 9572 88037132 ~ 88053890 (-) False LOC110531618
XR_005053258.1 mRNA downstream 9572 88038225 ~ 88053890 (-) True LOC110531618
XM_036988100.1 mRNA downstream 9578 88029528 ~ 88053884 (-) False LOC110531618
XM_036988084.1 mRNA downstream 9579 88029528 ~ 88053883 (-) False LOC110531618
XM_036988130.1 mRNA upstream 27190 88092044 ~ 88124727 (-) True LOC118936685
XM_036988136.1 mRNA upstream 66184 88131038 ~ 88144466 (-) True LOC100499622
LOC118966733 mRNA upstream 94263 88159117 ~ 88164611 (-) True LOC118966733
XM_036988142.1 mRNA upstream 114098 88178952 ~ 88202158 (-) False papolg
XR_005053261.1 mRNA upstream 114098 88178952 ~ 88202158 (-) False papolg
TU108928 other downstream 147562 87913302 ~ 87915900 (-) False LOC110531505
TU107871 other downstream 768463 87294357 ~ 87294999 (-) True G97535
TU107596 other downstream 1275410 86787057 ~ 86788052 (-) True G97308
TU107498 other downstream 1440151 86566477 ~ 86623311 (-) True G97251
TU107372 other downstream 1670373 86392561 ~ 86393089 (-) True G97176
TU109129 other upstream 153975 88218829 ~ 88220804 (-) False G98510
TU109132 other upstream 153975 88218829 ~ 88220804 (-) False G98510
TU109139 other upstream 153975 88218829 ~ 88220804 (-) False G98510
TU109140 other upstream 153975 88218829 ~ 88220804 (-) False G98510
TU109134 other upstream 154917 88219771 ~ 88220804 (-) False G98510

Expression Profile