RNA id: XM_036988130.1



Basic Information


Item Value
RNA id XM_036988130.1
length 4084
RNA type mRNA
GC content 0.50
exon number 10
gene id LOC118936685
representative True

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 88092044 ~ 88124727 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AATTGTGGGCGTTCAACGTCTCGAGGGGATTACCCCAACTCAACACTGAGAATGCCGCTCAAATACAGACATGTTTACAGctggAGCTTCTCATTCAGACAACAACCCGTGATAAGGTTGTGCACACCAACACCATGGATGTGGCCGAGCCCAGTGTTCAGATCTTTGAGCAGCCCAAACAGAGGGGCATGCGCTTCAGGTACAAGTGCGAAGGCCGCTCTGCAGGCAGCATCCCTGGAGAGAGGAGCTCTGACAACAACAGGTCATACCCCACTATACAGATTCTGAACTACTGTGGGAAGGGCAAAGTGCGCGTTTCCCTGGTAACCAAGAACGAGCCCTTTAGGCCCCACCCACATGACTTGGTGGGCAAGGACTGCAAGGAGGGATTCTACGAAGCTGAGTTTGGCCCAGAGCGCAAGGTCTTCGCCTTCCAGAATCTGGGTATCCAgtgtgtgaggaggagagaggtaaagGACTCCATCGTGCAGAGGATGACCAGAGGGATCAACCCATTCAATGTGCCACGGGAGCAGCTGTTACAGACCGAAGAGTACGACCTGAACGTGGTGCGACTCTGTCTGCAGGTGTTCCTACAGGACGACAGCGGACACTACAACCGCGCGCTCAACCCCATTGTCACAAACCCCATCTATGACAACAGGGCTCCGAACACGGCTGAGCTGCGTATCTGTCGGGTCAACAGGAACAGTGGCTGTGTGAAGGGAGGAGACGAGATCTTTCTGCTGTGTGATAAAGTCCAGAAAGATGACATTGAGGTGCGTTTCTTCACTCCTGGCTGGGAGGCTAAGGGCTCCTTCTCCCAGGCTGACGTTCACCGCCAGGTGGCCATCGTCTTTAAGAGCCCGCCCTACTACGACACGTCCATCACCGGCCCGGTCACTGTGCACATGCAGTTACGCCGTCCCACCGACCAGGAAGTCAGCGAGCCCATGGAGTTCAGATATCTACCCGACGACAAGGATCCCTATGGTTgccaggagaagaagaggagaagagagcaccTGATGAAAACCTTACCTGGGTTCTTACCTTTAGGTGGAATGAATCCCATGAACAGACCGAAGGCAGTACCACACAGTCCCATGGCCCAGTCCATGAGGAAAGACATCAACAACATGTACATGAAACAGCCCTCTCCCGCTATGATGCGTCAAACCCCTCCTACCATGTACAACCACGCCAACCAACATTACCAACAACATAGCCCTCAGCAGCGCACAATGATGACATCCATCAACCAGATGTGGCCCCAACCCAACCCGACTTTGTCCCTGGAGACCATCAGAATTAACCCCTCGAGCACCGGTAGTAACCAGGGTAACGGTATGCAGCAACAGCAGGTGAACCACTGTGTTACCTCTGGGTACCTTCATGGAGGGGAGAGCAGCGGTAGTGGTAgcggtggtggtggcggtggtaaCATCCTGCCCCAACTCACCATGGGGGACCTGCAATGTCTGGGTCTGGAGTCCAATCTCCAGGGTCCTTCGGCCAGTCATGCCCTGCCCGGTGGGCCTGATCTCCAGCTCCACCACCAGCAGCCTCACCCCCAGCAGCCTCACCAGCGGCAGCACTTCCAACAGCATAGACAGCAGCAGCTCCACCAGAGGAAAGGGCCATCCTTTACCCAGGGCATGGGGAGCCAGGAAGGGCAGATCCAGGGGAGTCAGACCCAGACCCTGGGCCTCCAGGCACCCTGGAGCAGCGGTGGCGAAGTGGGGTCCCTGGGGTTGGGCTTCCTCCTGGATAGCGTGGAGAGTGATGAGATCATCCAGGGCCTGGTGGGAGGAGGGGGCCCTCAGGCCACCTTCCAACTGAAGCAGGAGCCCCTAACTGGGGGACAGGAGGGCCAGATGACCGCCTCTTGTTCCTTCTCCGCCTCGGACggccagcagcagcagtcgtacgCCAACCTCCTTCCCCGGCCTATGAGTAACAGCAACGGCATCACCATGGAGACAGCAAGGCATGAAAGCACCAATAGCAACTCCAACAACATCCAGGCCCTCAAGAACTTACAGAACCCCTTCACCCCAGCCAATGGAATGGGGCAAGAAGGTGCCCATTTTGACTCCTTGGCTGCCTGGGCCTTTTTCACTTCACCGCAGTGACTTGGCACATTCTCAGCCTGTGGGAAATGCTTCTGGCAGTCTCAGTGAGCAAATGCTTAGTAATTTTGTCTGTGTAAGAATGTGGTCAGAACTTGTGAACAGACATAGAGATATTTTCAGGGCAAAGGTAACTCAACTGGCTATATGAATATGATAtgaatgtacttttttttttgtatcaCTCAATCAGTCTCAGAGTTAGATGAGTTGAGTTCTCTGCCAACAGAAGTAATCAATGCTTTGTGGTTTTAACATGATGAATATGCTTTTGAGGAAAAGGGGGATAAAGGTTAAGATAAACACGTGATAGTATGTTTTTGTTAACACTTTACTTGAAGTGGGCTGTTATAATGGCCTTACTAACCCATACAGAAGCAAGAATGTCATTACACTTTCCATGAAATGACCCCACatcatgttgttaggttaaaaaGAACACATGGTtcacaccattcaaaccaatgagggttcggAACTTTAAAGCCGACGATCTCAGGAGGATCTTTTATCAGATAGAACCTTGTAGTTCTAATGTCCCGATTCAACGGTCTACTGTTCCATGTTCCGTGTTCCATGTTCCGTGACAGTGTTATGTTACAGTGTAATGTTGGTCAAAGAGCCTCCAGAGTGGCCcggtggtctaagacactgttctagatgtgccactagagatcctggtttgagtccaggctctgtcggcagccggccgcgaccgggagacccatggggcggcgcacaattggcccagcgtcgtctgggttaggggagggtttggccggctgggatgtccttgtcccatcgcgctctagcgactcctgtggcaggccgggcgctaTGCATGCTGACACAGTTGCCAGGTGACTCttgtgttttctccgacacattggtgcggctgtcttctgggttaagcggacattgtgtcaagaagcagtgcggcttggctgggtcgtgtttaggaggacgcacggctctcgaccttcgcctctcccgagtccgtacgggagttgcagcgatgggacaagactgtaactaccaattggggagaaaaagaggtaaaaatacaaaataaatctaAAAACATTTATAAAGGTTGAGCATAAAAAACTGTCATGACCTGTTACGTCAGCTGTTATAACAGCATCATAAAGGTATTATGACAAGTCCACTTTGGGTAAAGTGTTCTATGTCCTGTACATCTACAATAAAGCCAGTTGAGAGTTTAGCATGTTCAATCTCTACAAATGCTATAGCTCTGAAGAGTGGCGAGGTACTCAGATTCCCTCAGAGGAAGATTCTGGGAGTGTCCAGTCAGTCACTGTTGGAATACTTCAGAGATGCCTCCTTGTTTCCTTGACCTATCCTGTCACTCACTGAGCTACAAGTGATAGTATATCTGAAAGCAAGGTGACCACCTTATTACTTCCACCAATCCAACCAATTGAGATCCGTGATGACTTCAGGTGAGGTAGGAAGGAAGAATGcatttctacagtatttcaacagGACCAGTGGTAGGTAGCACTGTGGTATTCCCTGGTAATGGCTATGTCATATTAATAATCACGTGTGCTATCTATCCCAGAGTTCTCAGAGCATTGTGATGTAATCAACACTACggaacatcccaaatggcaccctattccctagtgcactatattagggctctgatcaaaactAGTGCACGGCATAGGGGATAAGGTGCACTTTGGCATGCTGACCGTGGTTCCACATCAAATGCATCAGTTACTTTTCATGTCATAATTTACCcaaatactgtatgtatggtttATAAATACTGTATGCATGGTGTATAAATGTTGATGGGTTTTTGTCTTAAAAAGTTGTTATTATTTTCATGAACAACATTTTGTAAGCTGATGATGTTTCTGTGGTATTTTCCTAAATGTTTTATGAAATAAATTCTTAATAAAAATCTTTATTTTATTCTA

Function


GO: NA

KEGG:

id description
K09254 REL; c-Rel proto-oncogene protein

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU109027 lncRNA downstream 64379 88027047 ~ 88027665 (-) True G98445
TU108971 lncRNA downstream 70237 88021032 ~ 88021807 (-) True G98399
TU109026 lncRNA downstream 72753 88018908 ~ 88019291 (-) True G98444
TU109005 lncRNA downstream 99884 87991819 ~ 87992160 (-) True G98427
TU109002 lncRNA downstream 108614 87981651 ~ 87983430 (-) True G98424
TU109088 lncRNA upstream 41110 88165837 ~ 88167312 (-) False G98488
TU109087 lncRNA upstream 41297 88166024 ~ 88167312 (-) True G98488
TU109099 lncRNA upstream 72883 88197610 ~ 88197931 (-) True G98499
TU109101 lncRNA upstream 79563 88204290 ~ 88204609 (-) True G98501
TU109103 lncRNA upstream 86234 88210961 ~ 88212201 (-) True G98502
XM_021614896.2 mRNA downstream 26921 88054545 ~ 88065123 (-) False pex13
XR_005053257.1 mRNA downstream 38154 88037119 ~ 88053890 (-) False LOC110531618
XR_005053256.1 mRNA downstream 38154 88037132 ~ 88053890 (-) False LOC110531618
XR_005053258.1 mRNA downstream 38154 88038225 ~ 88053890 (-) True LOC110531618
XM_036988100.1 mRNA downstream 38160 88029528 ~ 88053884 (-) False LOC110531618
XM_036988136.1 mRNA upstream 6311 88131038 ~ 88144466 (-) True LOC100499622
LOC118966733 mRNA upstream 34390 88159117 ~ 88164611 (-) True LOC118966733
XM_036988142.1 mRNA upstream 54225 88178952 ~ 88202158 (-) False papolg
XR_005053261.1 mRNA upstream 54225 88178952 ~ 88202158 (-) False papolg
XR_005053262.1 mRNA upstream 54225 88178952 ~ 88202158 (-) True papolg
TU109035 other downstream 27130 88063462 ~ 88064914 (-) True pex13
TU109033 other downstream 27190 88063462 ~ 88064854 (-) False pex13
TU108928 other downstream 176144 87913302 ~ 87915900 (-) False LOC110531505
TU107871 other downstream 797045 87294357 ~ 87294999 (-) True G97535
TU107596 other downstream 1303992 86787057 ~ 86788052 (-) True G97308
TU109129 other upstream 94102 88218829 ~ 88220804 (-) False G98510
TU109132 other upstream 94102 88218829 ~ 88220804 (-) False G98510
TU109139 other upstream 94102 88218829 ~ 88220804 (-) False G98510
TU109140 other upstream 94102 88218829 ~ 88220804 (-) False G98510
TU109134 other upstream 95044 88219771 ~ 88220804 (-) False G98510

Expression Profile