RNA id: XM_036988136.1


Basic Information

Item Value
RNA id XM_036988136.1
length 2463
RNA type mRNA
GC content 0.51
exon number 14
gene id LOC100499622
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 88131038 ~ 88144466 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCTGCATTTCTCCATTCCTCGGCTCAATCGCTAGATCCcgtcctccatccatccctccttctctccatccatccctccgtccGTGCGCCTGTCCTTTCATCATGCAGTGGTTGTCTGTCTGCAGCCTGTTGGTGCTGCTGAGTGTGTCAGCCCGGTCTCAGGCTCAGAACCAGATCTGTACCATCTTCACGGAGGCCAAGGAAGATGGATTCAAATCTTTGATCCTTGTAGGGCTGGCTCAGAATCTTCCCGATAGTACGTTGGGTGACTTGGTGCCTCTCATCGCGGAGGCCTTAGCCATGGGCGTCAAATGCTGCTCAGACACTCCTCCAGAGGACTGCGACAGAGATGTGgcggaCCTGTTCCAGAGTGCGGTGTGTTCCTCTGAGACCCTGGTGGAGAAGAACCATCTGAAGATGTGCTGTGAGAAGACTGCCGCTGAGAGGACACACTGCTTCCTGGACCACAAGGCCAAGaTTCCTCGGGACCTGTCCCTCAAAGCTGAGCTGCCCGCTGCAGACCAGTGTGAAGACTTCAAGAAGGACCACAAGGCTTTTGTTGGGAGgttcATCTTCAAGTTCTCCAAGAGTAACACGATGCTACAACCACATGTGATCCTGGCTATCGCCAAAGCTTATGGAGAGGTTCTGACTAGCTGTTGTGGAGAGGCTGAGGCCCAGACTTGCTTCGACACCAAGaaAGCTACTTTCCAACGCGCCGTCGGGAAACGCGTGACTGAACTCAGGGCCCTGTGCATCGTCCACAAGAAATATGGAGACCGCGTTGTCAAGGCCAAGAAGCTGATCCAGTACAGTCAGAAGATGCCTCAGGCCTCTTTCCAGGAGATGGGAGGCATGGTAGACAAGATCGTAGCGACTGTTGCCCCCTGCTGCAGCGGAGACATGGTCACATGCATGAAGGAGAGGAAGGCCCTGGTGGATGAGGTGTGTGCTGATAAGAGTGTGTTGTCTCGCGCGGCGGGTCTGTCAGCATGCTGTAAGGAGGATGCAGTACACAGAGGGTCCTGTGTTGAGGCCATGAAGCCAGACTCTAAGCCAGACGGTCTGTCTGAGCACTACGACGTTCACGCTGACATAGCAGCAGTCTGCCAGACCTTTACCAAGACCCCGGATGTAGCCATGGGgaaGTTGGTGTATGAGATCTCAGTGCGTCACCCTGAGTCGTCTCAGCAGGTGATTCTGAGGTTCGCCAAGGAGGCTGAGCAGGCCTTGCTCCAGTGCTGTGACAAGGAGGACCATGCAGAGTGTGTCAGAACCGCTCTGGCAGGAAGTGATATTGATAAGAAGATCACTGATGAGACTGACTACTACAAGAAGATGTGTGCTGTTGAGACTGGCATGAACAATAACGCCTTTGAGAAGAGTATGATGGTGCACTACACCAGGATAATGCCCCAGGCCTCCTTCGACCAGCTCCACATAGTGTCAGAGAGGGTGCATGATGTTCTCCATGACTGCTGCAAGGACGAGCCAGGCCACTTCATCCTGCCTTGTGCAGAGGAGaagCTGACCGATGCCATCGACGCCACATGTGAGGACTACGACCCCTCCAGCATTAACCCCCGCATCGCCCACTGCTGCAACCAGTCCTACTCCATGAGGAGACCCTGTATCCTGGCCATCCAGCCTGACACGGAGTTCATGCCCCCAGAGCTGGATGCCAGCAACTTCCACATGGGCCCTGAGCTCTGCACCAAGGACAGCAAGGAGCTGCTGCTCTCTGGGAAGAAaCTACTGTATGGTGTGGTCAGACATAAGACCACCATCACTGAGGAGCAGCTGAAGTCCATCTCTACTAAATATCACAGTATGAAGGAGAAGTGCTGTGCTGCTGAGGACCAAGCAGCATGCTTCACTGAGGAGGCACCCAAGCTGGTTGCTGAGAGTGCAGAGCTGGTCAAGGCTTAAGATAGAATTGTGATGATTTTAATTTCAAAAGATGAactgatgatttaaaaaaaataaaaataataaaggTTCTGTCTGTATCGATCCATCTACCTCCCCAGCCTACATTTACACCATGGTGACCTCATCCTCCTATCCACAACGTCTTGTCATCCACTCATAAGTCTGTCTATCAGTGATCTGTGATCGACTCATAAGTCTGTCTATCAGTGATCTGTGATTGACTCATAAGTCTGTCTATCAGTGATCTGTGATTGACTCATAAGTCTGTCTATCAGTGATCTGTGATTGACTCATAAGTCTGTCTATCAGTGATCTGTGATTGACTCATAAGTCTGTCTATCAGTGATCTGTGATTGACTCATAAGTCTGTCTATCAGTGATCTGTGATTGACTCATAAGCCTTACAGCCTACCCTCATCAAACCTCTATCTGGGATGAATCACGCCGCTGGTTAATTTCTGATAGACATGAATGACTCCTGTCAATCAAATACACATGAATAACTGAATAAAGTCATGTTTATCAACTGTA

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0005615 extracellular space cellular_component
GO:0046872 metal ion binding molecular_function
GO:0008289 lipid binding molecular_function

KEGG:

id description
K16141 ALB; serum albumin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109072 lncRNA downstream 16756 88113679 ~ 88114282 (-) True G98478
TU109071 lncRNA downstream 17072 88111666 ~ 88113966 (-) False G98478
TU109063 lncRNA downstream 28785 88101473 ~ 88102253 (-) True G98473
TU109027 lncRNA downstream 103373 88027047 ~ 88027665 (-) True G98445
TU108971 lncRNA downstream 109231 88021032 ~ 88021807 (-) True G98399
TU109088 lncRNA upstream 21371 88165837 ~ 88167312 (-) False G98488
TU109087 lncRNA upstream 21558 88166024 ~ 88167312 (-) True G98488
TU109099 lncRNA upstream 53144 88197610 ~ 88197931 (-) True G98499
TU109101 lncRNA upstream 59824 88204290 ~ 88204609 (-) True G98501
TU109103 lncRNA upstream 66495 88210961 ~ 88212201 (-) True G98502
XM_036988130.1 mRNA downstream 6311 88092044 ~ 88124727 (-) True LOC118936685
XM_021614896.2 mRNA downstream 65915 88054545 ~ 88065123 (-) False pex13
XR_005053257.1 mRNA downstream 77148 88037119 ~ 88053890 (-) False LOC110531618
XR_005053256.1 mRNA downstream 77148 88037132 ~ 88053890 (-) False LOC110531618
XR_005053258.1 mRNA downstream 77148 88038225 ~ 88053890 (-) True LOC110531618
LOC118966733 mRNA upstream 14651 88159117 ~ 88164611 (-) True LOC118966733
XM_036988142.1 mRNA upstream 34486 88178952 ~ 88202158 (-) False papolg
XR_005053261.1 mRNA upstream 34486 88178952 ~ 88202158 (-) False papolg
XR_005053262.1 mRNA upstream 34486 88178952 ~ 88202158 (-) True papolg
XR_005053264.1 mRNA upstream 83422 88227888 ~ 88230342 (-) False LOC118966057
TU109035 other downstream 66124 88063462 ~ 88064914 (-) True pex13
TU109033 other downstream 66184 88063462 ~ 88064854 (-) False pex13
TU108928 other downstream 215138 87913302 ~ 87915900 (-) False LOC110531505
TU107871 other downstream 836039 87294357 ~ 87294999 (-) True G97535
TU107596 other downstream 1342986 86787057 ~ 86788052 (-) True G97308
TU109129 other upstream 74363 88218829 ~ 88220804 (-) False G98510
TU109132 other upstream 74363 88218829 ~ 88220804 (-) False G98510
TU109139 other upstream 74363 88218829 ~ 88220804 (-) False G98510
TU109140 other upstream 74363 88218829 ~ 88220804 (-) False G98510
TU109134 other upstream 75305 88219771 ~ 88220804 (-) False G98510

Expression Profile