RNA id: XR_005053262.1


Basic Information

Item Value
RNA id XR_005053262.1
length 6203
RNA type mRNA
GC content 0.50
exon number 25
gene id papolg
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 88178952 ~ 88202158 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGATACAGAGACTGCTTGAGCGCCATATTGGAGTGTAACTAACTAGCTATTGTTATAAATAGGGTCGGGGCTGCTGCTGGCTGAGTTTACATGTTTTCTACAAGTTTGTTCTAAGGAAAAGAGAAAGTTATCGGTGGGTCATGAAAGAAATGTCAGCGAACAGTAACAGTATGCATGGCGGGCAGCAGCCTCAGAAACACTATGGCATTACCTCATCCATTAGCATGGCCTTCCCCAGGGAGGTGGACCATCAGTACACACACAAGCTCAGCGAGGCCATGAAACCCTTTGGGGTGTTTGAGGATGAGGACGAACTCAACCACAGACTCGCAGTTCTTGGAAAGTTGAATACATTTGTCAAGGAATGGATTGCCGAGATCAGTGAAACGAAGAACCTCCCACCATCGACGATAACCAATGTGGGGGGGAAGATCTTCACCTTTGGGTCTTACCGGCTTGGAGTTCACACTAAAGGGGCGGATATTGATGCCTTGTGTGTATCGCCGCGACACGTGGAGAGGACAGACTTCTTCGACTCATTCTTTGCGAAGCTCAAACTGCACGAAGAGATCAAAGACCTACGGGCGGTGGAGGATGCCTTTGTACCTGTGATCAAATTCAAGTTTGACGGCATCGAGATTGACCTGCTGTTTGCGCGGCTGGCTCTGCAGTCCATCCCAGATAACCTGGATCTGAGAGGAGACTCCCACCTGAGGAACCTGGACATCCGCTGTATCCGCAGTCTCAATGGCTGCAGAGTGACAGATGAGATCCTGTACTTGGTACCAAACAAGGAGAACTTCAGACTAACCCTGAGGGCTATCAAGCTGTGGGCCAAACGCCGTGGGATCTACTCCAACATGTTGGGCTTCCTGGGTGGAGTCTCCTGGGCCATGCTGGTAGCCAGGACCTGCCAGCTCTACCCCAACGCTGTGGCCGCCACTCTCGTACACAAGTTCTTCCTCGTCTTCTCCAAATGGGAATGGCCAAATCCTGTGCTTTTGAAACAGCCCGAAGACAGCAATCTGAATCTGCCTGTTTGGGATCCACGAGTGAATCCGTCAGACCGGTACCACCTGATGCCCATCATCACGCCAGCCTACCCCCAGCAGAACTCTACCTACAACGTCTCCTCTTCCACACGCACCATCATGAGCGAGGAGTTCAAATACGGTCTCAGTGTTACAGATGACATCCTTCAGGGGAAAACCGACTGGTCCAAACTGTTCCAGCCACCCAACTTTTTCCTGAAGTACAAGCATTATATTGTTCTGACTGCCAGTGCTTCCACAGAAGAAAACCAATTAGAATGGATTGGTCTGGTGGAGTCTAAGATCCGTGTCCTGGTGGGGAACCTGGAGAGGAATGAGTACATCACCCTGGCACACGTCAACCCCACATCCTTCCCCGGGAACAAGGAGAGCTGTAGCGAGAACGAGTTTGTCTCCATGTGGTTCATTGGGATCATCTTCAAGAAAGTGGAGAACGCTGAGAGTGTCAACATCGACCTGACCTACGACATCCAGTCCTTCACAGATACAGTTTACAGGCAGGCCAACAACATCAACATGCTGAAGGATGGGATGAAGATCGAAGCGACACACGTGAAGAAGAAGCAGCTCCACCAGTACCTTCCTGTTGAGCTGGTGCAGAGGAAGAAGAGGAGCATAGTGGAGCTGAACCGGAACTCCAACGGCGGGAGTTCCAAGCGGTCCTCTCTCGACGGCAGTCAGCTGGACAGTTCCAGAGACACTGACTCCGGGACTCCCTTCAGCTCTCCCACCTCCGTCTGCAAGCCGTCCAGGCCGGCCGCCTCAGACACAGACGACAGTTTGACACCCCCCAAGCTGCCAGCCTCTCTGTTTGTGGAGAGCAGCTCCTCGGTGCCAGACGTCTCGCCACCCAGGACCGATCAGGAGAAGGGGTTGTCCATCCCCGTCATTGGATCAAagTCCAagccctctgccccaacgggcccagTCGGTAGCACCATTCCTACGGTAGTGGGTAGGAGCGTGGTCTCTCTCGGCACTACAGAGCAGCACCAGAACGGATCCAAGAGACTCCACTCCCCTACGCTGGAGGATCAGTCCAAGAGGCTGAAAGACAGCGCAGAGCCGCTGGCTGATGTGTTGACCTTCAAGGAGCCGTTCCCTCCATCTGGCGACGGCAGGGAGCAAGGGGACGGAGTCCAAGTGGCGAGTCCTCCAGCAGGCAGCACCATTCCTACAGTAGTAGGCAGGAGCGTTGTACCCTGCCTGGGCTCCTCTAGAGATACATCCGGCCCGACAGAGCAGAACCAGAACGGAGCCACCGCTGCAGCCAAGAGACCTCACTCCCCCACACAGGACGGACCCCCCAAGAGGATACGAGACCCTGCAGATCTGctggtGTCCGGTGATGACTCTGCATTCAAGGAGCCGTTCCCTTTGTCTAGCGACGGCCAGGAGCAAGGGGACGGAGTGAACGTCGAAAGTCTTGGAGGGGTAAAGGCTATGCCTATTCCAACTATCGACACATCAAGAACACAGAGACTTCCCAGTATGGAGCTGCCAGACGTGacctctcccctccccagcaGTAACCACCAGCGGGTGGTTAAGAACTCCATCAGACTAGCCCTCAATAGGCACAGGTAACCCCAggtaacgccccccccccccccccccccccccccaaaccccttCCTTCACGAGGCCAGGACCTACAACACTGACTAGCTCCAGACCTGAGAGATCCAAAATCAAGACTACTGTGGTAAAACCTAGTGAGGAAGCCGATTTTTAACTCTCCCGCTCACCCCACCCTGTCACTGGACGATGTGCAACGACAGTCCCTTgttccccccccccacaaaaaaatgtCATCTCTGTTTCTATGGTCCCCTTCCCAGTTGAGCCTGAAGCAGAAATTAAAATGCTGATTTAAGATTGGGTTGGAGAAGAgttggatttatttatttatttttttgtaaatttccccccctcttcctttacTGTGTAGTTTTAAATGGCCTTAACGTGTCGATGCTTGCTACTACACCTGTCTGTACCATCCTACTGTTTTGACAAATGGGAAAGTTCTACAGTAGGTGTAGTTTATTGTACATAACTcgtctttaaaaaataaaaaaaaagaatcaCAGACGTTTAGTCTTTCCATACAGCTGTTATAGTTTTATGAtctaaaatgaagaaaaaaaaatgtttaaaaaatgtattgcccccccccccactgtttGTCAACCACATTACAACGTGACCTTGATAGCCAATCTCAGCCTTCCCACCCAGTAGACTCAGCAACTTGGGTTGTGTTCATTTGGGCCCAACATatgaaaatgttttgcaacagaaacctAAAATGAGCATTCCTTTTTGGATAAGTTCAGATGGTACCTCCCTTTTTTCTTCCTGTATATTCCCCCCTCTAGGTTAACAGGACCTCCTGTGTATATCCCTTCCTCTTGGTTAACAGGACCTCCTGTGTATATCCCTTCCTCTAGGTTAACAGGACCTCCTGTGTATATCCCTTCCTCTTGGTTAGCAGGACCTCCAGTGTATATCCCTCCCTCTAGGTTAACAGGACCTCCTGTGTATATCCCTTCCTCTTGGTTAGCAGGACCTCCAGTGTATATCCCTCCCTCTAGGTTAACAGGACCTCCTGTGTATATCCCTTCCCACTAGGTTAACAGGACCTCCTGTGTATATCCCTTCCCACTAGGTTAACAGGACCTCCTGTGTATATCCCTTCCTCTTGGTTAGCAGGACCTCCAGTGTATATCCCTCCCTCTTGGTTAACAGGACCTCCTGTGTATATCCCTTCCTCTTGGTTAACAGGACCTCCTGTGTATATCCCTTCCTCTTGGTTAACAGGACCTCCTGTGTATATCCCTTCCTCTTGGTTAGCAGGACCTCCTGTGTATATCCCTTCCTCTTGGTTAGCAGGACCTCCTGTGTATATCCCTTCCTCTTGGTTAGCAGGACCTCCAGTGTATATCCCTTCCTCTAGGTTAACAGGACCTCCTGTGTATATCCCTTCCTCTTGGTTAGCAGGACCTCCAGTGTATATCCCTCCCTCTAGGTTAACAGGACCTCCTGTGTATATCCCTTCCTCTTGGTTAGCAGGACCTCCAGTGTATATCCCTCCCTCTAGGTTAACAGGACCTCCTGTGTATATCCCTTCCCACTAGGTTAACAGGACCTCCTGTGTATATCCCTTCCCACTAGGTTAACAGGACCTCCTGTGTATATCCCTTCCTCTTGGTTAGCAGGACCTCCTGTGTATATCCCTTCCCACTAGGTTAACAGGACCTCCTGTGTATATCCCTTCCTCTAGGTTAACAGGACCTCCTGTGTATATCCCTTCCTCTAGGTTAACAGGACCTcctgtgtatatcccccccccccgccccctctaGGTTGGTTAACAGGACCTCCTGTGTATATCCCTTCCCACTAGGTTAACAGGACCTCCTGTGTATATCCTTTCCTCTAGGTTAACAGGACCTcctgtgtatatcccccccctGCCCCCTCTAGGTTGGTTAACAGGACCTCCTGTGTATATCCCTCCCTCTTGGTTAGCAGGACCTCCTGTGTATATCGCTCCCTCTTGGTTAGCAGGACCTCCTgtgtatgccccccccccccctctaggtTGGTTAAAAGGACCTGTGTACATCCTCCCTCTTCGTTAAAGGGCCTCCTGTATGTTCTCTCTCAAGCTTTGACACCCACTAGAATAGAGAACCAACTCTCCTGGAGATCTACTGGGTAATTGtaggcttttgctccagccctgCACTAGATTCACACACCTGATACAGCCAACCAGGGTCCTGAGGGGCAGATCATTAGTAGAATCAGTTGTTTTTATAGTAGggttggaacacaaccctgcgtGCGGTAGGCTACTGTTCCCCAGGCAGCTCTAGAACCCAGGGAATGTGCTGAACATGAGGGACTGGACGGTTGTGTTGCGCTAGCAGGGTCATGGTTGTGAAGTGGTTCACCGCTGGATTTGTGTTACGGAAAGGGTTTCAAGCttttgctggtgtgtgtgtgtgtgtgaggatgttGGTGTAcatgagttagtgtgtgtgtgtgttgtaattcCCTCAGTGTGGGGTGTTGATCCTCTGCACCTCCCGTGGAGGTTCTTAAACATGGCGTCTCCTGGGGTCATCCTAGCCTGAGTCCCAAAAAGCACCCTattctatatatagtgtactacttttggccctggtcaatagaagtgccctctgtagggaatagggtgcaatttcagATGCGGTCTGGTCGAGGAGTTGAcctctcaaatcaaatttcaGGACTCGTACTCACAAAATTTCTGAGtacgagtgctgatctaggatcaggtcccccttgtcTATATAATGTTGTTCGTTTTAAGCAATCGGCCACGAGCGggtgtggtatacggccaataCTCCGCGTCTATGGGCTGTTCTTATGCGCAACGAGGAGTGCCTGGATACggcccttagccgtgatatattgtCCATATTCCACAAACCCCCCGAGGTGCTTTATTGCAATTATAAACTGATTATCAACGTAATTACactagtaaaaaataaatgttttgttatacccgtggtatacggtccgATATACCATggatgtcagccaatcagcattcagggcttgaaccacacAGCTTATCTGATTTTTAAATGTCAAAACCGACTGTAGATCAGCTGTGGTGCTCTGAGGCCCTTTTGAGTACAAGCCCTGCTCTCCGTTAAacagtgatctctctctctctccattctaccCTGGTTCGGTGTACAGAAAGCATCTgctggcatcccaaatggcaccctattccctacatggggctctggtcaagagtagtgcactaaatagggaaatagggtgttatttgggactcACCCTATGTATTATAACAGGTGTATTCTCTTCATATCTTTCTGTTTTCTTATTGCTTTGTGTGTATTTGTACGGTTTTGTATCATCTGCTCTAACAGCTGAAGCCTCTCAATGACTTTTACACCACTCGGTTTTCCAACAGCTTTCTCTGTGCTTTTTGAGAAACAATTAAACAGGTCAtttatcagtttttttttttgtagggcAACAAGTTGTATTGGAAAAAGGTATTTTTGTATGTATTGTCTATCACCTTTAAACGAGACCATTAAATCCATAAAACCCCTA

Function

GO: NA

KEGG:

id description
K14376 PAP; poly(A) polymerase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109088 lncRNA downstream 11640 88165837 ~ 88167312 (-) False G98488
TU109087 lncRNA downstream 11640 88166024 ~ 88167312 (-) True G98488
TU109072 lncRNA downstream 64670 88113679 ~ 88114282 (-) True G98478
TU109071 lncRNA downstream 64986 88111666 ~ 88113966 (-) False G98478
TU109063 lncRNA downstream 76699 88101473 ~ 88102253 (-) True G98473
TU109101 lncRNA upstream 2132 88204290 ~ 88204609 (-) True G98501
TU109103 lncRNA upstream 8803 88210961 ~ 88212201 (-) True G98502
TU109107 lncRNA upstream 21173 88223331 ~ 88224581 (-) False G98505
TU109108 lncRNA upstream 21173 88223331 ~ 88224678 (-) False G98505
TU109109 lncRNA upstream 21173 88223331 ~ 88224581 (-) False G98505
LOC118966733 mRNA downstream 14341 88159117 ~ 88164611 (-) True LOC118966733
XM_036988136.1 mRNA downstream 34486 88131038 ~ 88144466 (-) True LOC100499622
XM_036988130.1 mRNA downstream 54225 88092044 ~ 88124727 (-) True LOC118936685
XM_021614896.2 mRNA downstream 113829 88054545 ~ 88065123 (-) False pex13
XR_005053258.1 mRNA downstream 125062 88038225 ~ 88053890 (-) True LOC110531618
XR_005053264.1 mRNA upstream 25730 88227888 ~ 88230342 (-) False LOC118966057
XR_005053265.1 mRNA upstream 29783 88231941 ~ 88234270 (-) False LOC118966058
XM_036988180.1 mRNA upstream 34423 88236581 ~ 88270978 (-) False LOC118936686
XM_036988175.1 mRNA upstream 34423 88236581 ~ 88270980 (-) True LOC118936686
XR_005053271.1 mRNA upstream 512715 88714873 ~ 88715334 (-) False LOC118966063
TU109035 other downstream 114038 88063462 ~ 88064914 (-) True pex13
TU109033 other downstream 114098 88063462 ~ 88064854 (-) False pex13
TU108928 other downstream 263052 87913302 ~ 87915900 (-) False LOC110531505
TU107871 other downstream 883953 87294357 ~ 87294999 (-) True G97535
TU107596 other downstream 1390900 86787057 ~ 86788052 (-) True G97308
TU109129 other upstream 16671 88218829 ~ 88220804 (-) False G98510
TU109132 other upstream 16671 88218829 ~ 88220804 (-) False G98510
TU109139 other upstream 16671 88218829 ~ 88220804 (-) False G98510
TU109140 other upstream 16671 88218829 ~ 88220804 (-) False G98510
TU109134 other upstream 17613 88219771 ~ 88220804 (-) False G98510

Expression Profile